Lcy11g016960 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g016960
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionGag protease polyprotein
LocationChr11: 41429365 .. 41431474 (+)
RNA-Seq ExpressionLcy11g016960
SyntenyLcy11g016960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCAGTGGGTCGTGGACAGCAGCGTATTTGGGGCGTTTTCAACGGGTTTTTGAGCGTTTTCGTCATTGGGTAAGTTGGATTGAAGGTCGTATTGGTTGTTTATCGCATTTAAACAAATACCCATTTATGTAGCTCTTTTTTTTTTCAAGGTACCCAGAGCGTTTGAAGGCTTAATTGTCAATTTGAGCGATTCTTTTTATCCTAACCAGCAAGGTAAGGAGGTTGTTTGGGTGAATTTCTTCTCGGGTTAGCCTTCGTTAGTGTTTGTTTTAGTTCTCGAAAATTACCCATGTGTGTTGGAATCTATTTTAGCAGTTGTCGCTCAATTTTGGACCACTAAATCGCAGATTTTCGCTATTTTAGACTGTTGTCCAGCCACTAATTGGAGTTTTGGGAATCACTTAGTAAATTAAGGGCGAGGTCGGCTTCGCTAGAATTAAATTGACGTTTAAAATTAAGGAGTTATAAGCCAAGGTAAGTGACTTTATTGTTGAAGTTTTTAATTGGGAGCACATACTTGATTTTCAAAAATTCATGTGTTTTATGAGTTGTTTGAATATGTATGTGTTTATGAAAGATTGTTAAAGTATAAAAATTATTATGAATGCTTGCAAATGTTGAGTTTGGAAATTTTTCAGTTGGTGGTCTCATGAAAATTTTATAATATATATGAGTTTAAATGACATTTGAGTTTCCTAAATTTTGGAGGGGTACATGGAATTGATGTTCTTTAAAAGATGCCTATTCAGAACTTAGGGACATGAAATTGATGTACCTGAACTGAGGTTCGTGGAATTGATGTTCCTCTATATTCAGCACATGAAATTGATGTGTTTAAGCGATATGCATGAAATTGATGTATATCCAAGTTTACAGAGGAATAATTTTAGAGCCACCAAAATATGTTTGTTATTGATTTTAGAAATGTGCATAAGCGTGACCCAACCTCAACAGTAGGGTCGCTTACTGAGTATTTTAAATACTCATTCTTTTCTTAAATGTTTTTCTTTCAGGCAAAGGCAGTGGTATATGAAAGGCGATTGATGAGAACTGTTAGGCAGTCATGGGGGGGACTAGGGCTCATGAATTTTCATATTTTCTTCCGCTTTAAGAACTTGGTTTTACATTATTTGATTTGTAAACTTGTTTGAGATTTTTGTTTTTTTTTTTTTTTTTTTAGGCCATGTATGATTATAGTTTGGAAATTATTTAAAAATATTTTAAACCTTCAAAACCAGGGATCCCGAATAAAGGTTTTACTTTGAGATTTTTGACTTAAATTTGTGTTTAGGTTATACAATGTTTTTATTTAAAAAGGCCTCTAAAGCATGCTTGTAGTAACGGCTCTGAATAGACTCCTGTAAGGAGTCGGGTTGTTATAGTTGGTACCAGAGCCCTATTAAGGGTTCTGTAGACTGCTTACATCGTAAGCTTATGTGTCCCCAAGGCTAAATAATGAGATTCTCATCATCGTCAGGTATGCCCTTGTAATAAACTATGTTTAAAATATATATATATATATATATATATATATATATGCATATGTAATTATTTTTCCATGAGATGTATTATTTCTCTTGCCATTTAGTTTTCGGTTAGATAATTAAATAGGCTTAGTATGGGTGTAGAAACTTGAAGTATGCCTCCACGTGGATAAGGTCGAGGACGAGGACGCGGACGTGGTCCTAGTAGGGGTGGTAGAGGCCAGGCACCCCCGGAGCAAGTAGATCCTCCTATGGATCAGCATGTTGAGGATCTCCTAATGATCAAGCTCTTGCTCAGCCTGCACCTCCAGCGCAGGCACAGATCGTCACTCTGACTCTAGAGGCCCTCCAGACTCTTATAAATAATGTCATTGCCAATCAGGCGCCCCAGGCGAACCAAAATGAGAATCAAGGTCAGATGGGCTCAACTGAGGGGGCTCAATGTTTGAAAGATTTTAAGAAGTATGAACCGTCGTCGTTTAGCGGGAAGACTGTAGACCCCATGGTGGCCGAAGCTTGGACTGCCACGATTGAGGAGATCTTTCGCCATATGGAATGCCCCGAGGCACTGCAGGTGCCTTGCGCAATGTTTATGCTAAGAGATGATGCCTTGTTGTGGTAG

mRNA sequence

ATGGTGCAGTGGGTCGTGGACAGCAGCCCTGCACCTCCAGCGCAGGCACAGATCGTCACTCTGACTCTAGAGGCCCTCCAGACTCTTATAAATAATGTCATTGCCAATCAGGCGCCCCAGGCGAACCAAAATGAGAATCAAGGTCAGATGGGCTCAACTGAGGGGGCTCAATGTTTGAAAGATTTTAAGAAGTATGAACCGTCGTCGTTTAGCGGGAAGACTGTAGACCCCATGGTGGCCGAAGCTTGGACTGCCACGATTGAGGAGATCTTTCGCCATATGGAATGCCCCGAGGCACTGCAGGTGCCTTGCGCAATGTTTATGCTAAGAGATGATGCCTTGTTGTGGTAG

Coding sequence (CDS)

ATGGTGCAGTGGGTCGTGGACAGCAGCCCTGCACCTCCAGCGCAGGCACAGATCGTCACTCTGACTCTAGAGGCCCTCCAGACTCTTATAAATAATGTCATTGCCAATCAGGCGCCCCAGGCGAACCAAAATGAGAATCAAGGTCAGATGGGCTCAACTGAGGGGGCTCAATGTTTGAAAGATTTTAAGAAGTATGAACCGTCGTCGTTTAGCGGGAAGACTGTAGACCCCATGGTGGCCGAAGCTTGGACTGCCACGATTGAGGAGATCTTTCGCCATATGGAATGCCCCGAGGCACTGCAGGTGCCTTGCGCAATGTTTATGCTAAGAGATGATGCCTTGTTGTGGTAG

Protein sequence

MVQWVVDSSPAPPAQAQIVTLTLEALQTLINNVIANQAPQANQNENQGQMGSTEGAQCLKDFKKYEPSSFSGKTVDPMVAEAWTATIEEIFRHMECPEALQVPCAMFMLRDDALLW
Homology
BLAST of Lcy11g016960 vs. ExPASy TrEMBL
Match: A0A6J1DSJ6 (uncharacterized protein LOC111023512 OS=Momordica charantia OX=3673 GN=LOC111023512 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.5e-16
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 23  LEALQTLINNVIANQAPQANQNENQGQMGSTEGAQCLKDFKKYEPSSFSGKTVDPMVAEA 82
           +E LQTL+   ++NQ  Q  QN     +     A+ L+DFKKY+P SF G +VDPM+AEA
Sbjct: 1   METLQTLVQTTVSNQMTQLTQNRGSISI----EAKYLRDFKKYDPRSFDGLSVDPMLAEA 60

Query: 83  WTATIEEIFRHMECPEALQVPCAMFMLRDDALLW 117
           W + +E IFR+M C E  +V C +FML+DDA LW
Sbjct: 61  WLSLMETIFRYMRCLEEQKVQCDVFMLKDDAFLW 90

BLAST of Lcy11g016960 vs. ExPASy TrEMBL
Match: A0A6J1HWE2 (uncharacterized protein LOC111467258 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467258 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.2e-14
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 0

Query: 5   VVDSSPAPPAQAQIVTLTLEALQTLINNVIANQAPQANQNENQGQMGSTEGA---QCLKD 64
           V++   APP    +V L++EA Q LI    ANQ       E  G + ST      + L+D
Sbjct: 39  VLEPVVAPP--PNMVMLSMEAYQKLIQAAAANQ-------EGGGDVDSTSMTREFKYLRD 98

Query: 65  FKKYEPSSFSGKTVDPMVAEAWTATIEEIFRHMECPEALQVPCAMFMLRDDALLW 117
           F+KY+P  F GKT+DP++ E+W  +IE IF HM+CPE  +V CA FML+ +A  W
Sbjct: 99  FRKYDPPVFEGKTIDPVLVESWVESIETIFEHMKCPEDQKVKCASFMLKGEAHFW 144

BLAST of Lcy11g016960 vs. ExPASy TrEMBL
Match: A0A6J1HS13 (uncharacterized protein LOC111467258 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467258 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.2e-14
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 0

Query: 5   VVDSSPAPPAQAQIVTLTLEALQTLINNVIANQAPQANQNENQGQMGSTEGA---QCLKD 64
           V++   APP    +V L++EA Q LI    ANQ       E  G + ST      + L+D
Sbjct: 62  VLEPVVAPP--PNMVMLSMEAYQKLIQAAAANQ-------EGGGDVDSTSMTREFKYLRD 121

Query: 65  FKKYEPSSFSGKTVDPMVAEAWTATIEEIFRHMECPEALQVPCAMFMLRDDALLW 117
           F+KY+P  F GKT+DP++ E+W  +IE IF HM+CPE  +V CA FML+ +A  W
Sbjct: 122 FRKYDPPVFEGKTIDPVLVESWVESIETIFEHMKCPEDQKVKCASFMLKGEAHFW 167

BLAST of Lcy11g016960 vs. ExPASy TrEMBL
Match: A0A6J1EKD9 (uncharacterized protein LOC111435460 OS=Cucurbita moschata OX=3662 GN=LOC111435460 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-13
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 0

Query: 11  APPAQAQIVTLTLEALQTLINNVIANQAPQANQNENQGQMGSTEGAQCLKDFKKYEPSSF 70
           APP    +V L+ EA Q LI    ANQ  + + +        T   + L+DF+KY+P  F
Sbjct: 45  APP--PNMVMLSTEAYQKLIQAAAANQEGRGDDDST----SMTREFKYLRDFRKYDPPVF 104

Query: 71  SGKTVDPMVAEAWTATIEEIFRHMECPEALQVPCAMFMLRDDALLW 117
            GKT+DP++ E+W  +IE IF HM CPE  +V CA FML+ +A  W
Sbjct: 105 EGKTIDPVLVESWVESIETIFEHMNCPEDQKVKCASFMLKGEAHFW 144

BLAST of Lcy11g016960 vs. ExPASy TrEMBL
Match: A0A6J1FDR9 (uncharacterized protein LOC111444463 OS=Cucurbita moschata OX=3662 GN=LOC111444463 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.8e-12
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 0

Query: 2   VQWVVDSSPAPPAQAQIVTLTLEALQTLINNVIANQAPQANQNENQGQMGSTEGAQCLKD 61
           V+  V    AP A        ++ALQ +I N+ ANQ  QAN +       ST  A+ L+D
Sbjct: 33  VEQPVPPPAAPQAAPNPTAALVDALQVVIQNLTANQ--QANAST------STMEAKYLRD 92

Query: 62  FKKYEPSSFSGKTVDPMVAEAWTATIEEIFRHMECPEALQVPCAMFMLRDDALLW 117
           FK+ +P +F G + DP VA+ W  +IE +F    CPEA +V CA FMLR DA LW
Sbjct: 93  FKRGDPRTFKGTSDDPTVAQMWLRSIETVFWLTNCPEAHRVECATFMLRKDAELW 139

BLAST of Lcy11g016960 vs. NCBI nr
Match: XP_022156662.1 (uncharacterized protein LOC111023512 [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 9.3e-16
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 23  LEALQTLINNVIANQAPQANQNENQGQMGSTEGAQCLKDFKKYEPSSFSGKTVDPMVAEA 82
           +E LQTL+   ++NQ  Q  QN     +     A+ L+DFKKY+P SF G +VDPM+AEA
Sbjct: 1   METLQTLVQTTVSNQMTQLTQNRGSISI----EAKYLRDFKKYDPRSFDGLSVDPMLAEA 60

Query: 83  WTATIEEIFRHMECPEALQVPCAMFMLRDDALLW 117
           W + +E IFR+M C E  +V C +FML+DDA LW
Sbjct: 61  WLSLMETIFRYMRCLEEQKVQCDVFMLKDDAFLW 90

BLAST of Lcy11g016960 vs. NCBI nr
Match: XP_022967882.1 (uncharacterized protein LOC111467258 isoform X1 [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 0

Query: 5   VVDSSPAPPAQAQIVTLTLEALQTLINNVIANQAPQANQNENQGQMGSTEGA---QCLKD 64
           V++   APP    +V L++EA Q LI    ANQ       E  G + ST      + L+D
Sbjct: 62  VLEPVVAPP--PNMVMLSMEAYQKLIQAAAANQ-------EGGGDVDSTSMTREFKYLRD 121

Query: 65  FKKYEPSSFSGKTVDPMVAEAWTATIEEIFRHMECPEALQVPCAMFMLRDDALLW 117
           F+KY+P  F GKT+DP++ E+W  +IE IF HM+CPE  +V CA FML+ +A  W
Sbjct: 122 FRKYDPPVFEGKTIDPVLVESWVESIETIFEHMKCPEDQKVKCASFMLKGEAHFW 167

BLAST of Lcy11g016960 vs. NCBI nr
Match: XP_022967883.1 (uncharacterized protein LOC111467258 isoform X2 [Cucurbita maxima])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 0

Query: 5   VVDSSPAPPAQAQIVTLTLEALQTLINNVIANQAPQANQNENQGQMGSTEGA---QCLKD 64
           V++   APP    +V L++EA Q LI    ANQ       E  G + ST      + L+D
Sbjct: 39  VLEPVVAPP--PNMVMLSMEAYQKLIQAAAANQ-------EGGGDVDSTSMTREFKYLRD 98

Query: 65  FKKYEPSSFSGKTVDPMVAEAWTATIEEIFRHMECPEALQVPCAMFMLRDDALLW 117
           F+KY+P  F GKT+DP++ E+W  +IE IF HM+CPE  +V CA FML+ +A  W
Sbjct: 99  FRKYDPPVFEGKTIDPVLVESWVESIETIFEHMKCPEDQKVKCASFMLKGEAHFW 144

BLAST of Lcy11g016960 vs. NCBI nr
Match: XP_022928602.1 (uncharacterized protein LOC111435460 [Cucurbita moschata])

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-13
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 0

Query: 11  APPAQAQIVTLTLEALQTLINNVIANQAPQANQNENQGQMGSTEGAQCLKDFKKYEPSSF 70
           APP    +V L+ EA Q LI    ANQ  + + +        T   + L+DF+KY+P  F
Sbjct: 45  APP--PNMVMLSTEAYQKLIQAAAANQEGRGDDDST----SMTREFKYLRDFRKYDPPVF 104

Query: 71  SGKTVDPMVAEAWTATIEEIFRHMECPEALQVPCAMFMLRDDALLW 117
            GKT+DP++ E+W  +IE IF HM CPE  +V CA FML+ +A  W
Sbjct: 105 EGKTIDPVLVESWVESIETIFEHMNCPEDQKVKCASFMLKGEAHFW 144

BLAST of Lcy11g016960 vs. NCBI nr
Match: XP_023520277.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111783585 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 0

Query: 11  APPAQAQIVTLTLEALQTLINNVIANQAPQANQNENQGQMGSTEGAQCLKDFKKYEPSSF 70
           AP A        + ALQT+I N+ ANQ  QAN +       ST  A+ L+DFK+ +P +F
Sbjct: 26  APQAAPDPTAALVNALQTVIQNLTANQ--QANAST------STMEARYLRDFKRGDPRTF 85

Query: 71  SGKTVDPMVAEAWTATIEEIFRHMECPEALQVPCAMFMLRDDALLW 117
            G + DP VA+ W  +IE +F    CPEA +V CA FMLRDDA LW
Sbjct: 86  KGASEDPTVAQMWLRSIESVFVLTNCPEAHRVECATFMLRDDAELW 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DSJ64.5e-1648.94uncharacterized protein LOC111023512 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1HWE27.2e-1442.61uncharacterized protein LOC111467258 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HS137.2e-1442.61uncharacterized protein LOC111467258 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1EKD92.1e-1342.45uncharacterized protein LOC111435460 OS=Cucurbita moschata OX=3662 GN=LOC1114354... [more]
A0A6J1FDR98.8e-1242.61uncharacterized protein LOC111444463 OS=Cucurbita moschata OX=3662 GN=LOC1114444... [more]
Match NameE-valueIdentityDescription
XP_022156662.19.3e-1648.94uncharacterized protein LOC111023512 [Momordica charantia][more]
XP_022967882.11.5e-1342.61uncharacterized protein LOC111467258 isoform X1 [Cucurbita maxima][more]
XP_022967883.11.5e-1342.61uncharacterized protein LOC111467258 isoform X2 [Cucurbita maxima][more]
XP_022928602.14.3e-1342.45uncharacterized protein LOC111435460 [Cucurbita moschata][more]
XP_023520277.11.3e-1246.23LOW QUALITY PROTEIN: uncharacterized protein LOC111783585 [Cucurbita pepo subsp.... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g016960.1Lcy11g016960.1mRNA