Lcy11g016940 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g016940
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	(-)-germacrene D synthase-like isoform X2
Location	Chr11: 41264003 .. 41265929 (+)
RNA-Seq Expression	Lcy11g016940
Synteny	Lcy11g016940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATATGGAGTCAAAACCTCAGATGATGCCTCACTCAATGAGGATGTTCCTCGTCGATTTGCAAACTTTCCACCATGTGCTTGGGGAGATTACTTCATTTCCTCTCATTTCAACACTATGGTAAATATATTATTTTCCCTATCATTTGCTTTTTTTTTTTTTTTTCTTTCGATAACAAAGGTCGGTTTTGATAAAGTTTTTAAAATCACTTTTAACTACTAAAATTATCCGTAGGAAAATTTTCTTTTCTTTCCTAGTTTACACCCAAAATGTTTTTTTTTTAAAAAAAAAAAAATCATAATAAAACTTTAAAAAATAACTTAAAAGAAAACAGCTAAAATTTCAAAGTACTTTTAAAAGATAAATATATGTTTTGGTCCTTAATTTTCACGTATTTTTTTCAATTTAATCCATATTAGTTAAAAGATTCCATTTAATTATTTATATTTTAAAATTTTTTATTTTAGTCTATCATCATTAGTATATGTTAAAATTGGCAAATACTTAGTAAATGGCTATAAATTTAAAGGAGGAAAAAAGTAAACTAAGAGGTGAAAATTTTTAAAATAGAAATTTGAAAACAAGGGTTTCAATCAAATTAGTAGAGTTGTATTTCATGTTTTTAGATATGTGTTTGGTAAAAGATTTAGAAATTGGATCTCAATTTAAACCATTGTTTAAAATGTGTTTGATAATATATTTATAAAACATAAACTAGCTATAGTTATCAACTTAAATGTTAAGTTGAATATGTATTATTAGTTAATTTATAAACATTTTATATGCTATAAATTTGTATAATTATTATTTTACAATATCACATAATTTATAATACATTATATATTAAAATGAATTTGAGTTTATAACATGAAATACTATATTTATTATTATTATTTTTTATCTTTTTTAATTTAATTATGTATTTTAAAATTTAAAATTCAAAAGCGGAATACATTGAAAATATAAAATATAAAAAAAAAAATTGTTTTAAGAATTTTCACTATTTGGATCATAAAATTCGAAAAACAATTTCAAAAGCACAAAATCCAGTAGGCAAACAAGCCCTTAATTTCTCCTTCAAATTTATAATAAACTAATAATTTTTTTTTATTACTCTTCTCTTAAATGATTTTTTTTTCTTTTTTTTTTTAAGTAATCAATTTGTTGAGCATTATGTTGTGTAATTTTATCATAAATTAATCTTAATATTTATCAGGTAACAAACTGAATTGGAAAATGTGTTAATACACAAAGGACTTAATTGAACCTTTTTCAACAATAGGGAAAATTTTCAAAAAATACCAAAAATTAGAGACTAAAACATATATATCAGGTCTATTTTGAAAATATGAAAAACCAAACAATGAAATGTCATCAAATTTGGTTAAGTAATCAAATATAATGAAAACCTTTTAAAGTATTTTACTCTTCCTTAAAAAAAATGTGAACCACCTCACTTTTAATTAACTAAAATAAAATGAAAACAAAATTGCTATTGAATGAATGAATATGAAGGGTGTTCAAATTGATTTGTTTTGTAAATTTCAAACAGGGATATTCCATCTGTTTACAAACGAAATGGGAGATGGTTTCAATGGTGAAGGATGAAAGTGGAATATTAAGTTTGTACGAAGCATCTCACTTGAGAATGAATGTGGAGGGTATATTGGATAAAGCTTTGACTTTTGCAACTACTCACCTTCAAGCAATAGCCATGGATTCTAGCTCTCGTTTTGCTGATGAAGCTAAATATGCTTTGAAGTGGCCAATTTATAAATCCTTACCAAGGCTTATGACAAGGCATTGCATTTCTCTCTATGAAAAGGATCCATCAAATAAGGATATTTTGCTCACTTTTGCGAAGTTGGATTACAACACTTTGCAAAACCTTTACCGGAGAGAACTATGTGAAATTTCGAGGTAA

mRNA sequence

ATGTCATATGGAGTCAAAACCTCAGATGATGCCTCACTCAATGAGGATGTTCCTCGTCGATTTGCAAACTTTCCACCATGTGCTTGGGGAGATTACTTCATTTCCTCTCATTTCAACACTATGGGATATTCCATCTGTTTACAAACGAAATGGGAGATGGTTTCAATGGTGAAGGATGAAAGTGGAATATTAAGTTTGTACGAAGCATCTCACTTGAGAATGAATGTGGAGGGTATATTGGATAAAGCTTTGACTTTTGCAACTACTCACCTTCAAGCAATAGCCATGGATTCTAGCTCTCGTTTTGCTGATGAAGCTAAATATGCTTTGAAGTGGCCAATTTATAAATCCTTACCAAGGCTTATGACAAGGCATTGCATTTCTCTCTATGAAAAGGATCCATCAAATAAGGATATTTTGCTCACTTTTGCGAAGTTGGATTACAACACTTTGCAAAACCTTTACCGGAGAGAACTATGTGAAATTTCGAGGTAA

Coding sequence (CDS)

ATGTCATATGGAGTCAAAACCTCAGATGATGCCTCACTCAATGAGGATGTTCCTCGTCGATTTGCAAACTTTCCACCATGTGCTTGGGGAGATTACTTCATTTCCTCTCATTTCAACACTATGGGATATTCCATCTGTTTACAAACGAAATGGGAGATGGTTTCAATGGTGAAGGATGAAAGTGGAATATTAAGTTTGTACGAAGCATCTCACTTGAGAATGAATGTGGAGGGTATATTGGATAAAGCTTTGACTTTTGCAACTACTCACCTTCAAGCAATAGCCATGGATTCTAGCTCTCGTTTTGCTGATGAAGCTAAATATGCTTTGAAGTGGCCAATTTATAAATCCTTACCAAGGCTTATGACAAGGCATTGCATTTCTCTCTATGAAAAGGATCCATCAAATAAGGATATTTTGCTCACTTTTGCGAAGTTGGATTACAACACTTTGCAAAACCTTTACCGGAGAGAACTATGTGAAATTTCGAGGTAA

Protein sequence

MSYGVKTSDDASLNEDVPRRFANFPPCAWGDYFISSHFNTMGYSICLQTKWEMVSMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR

Homology

[Close]

BLAST of Lcy11g016940 vs. ExPASy Swiss-Prot
Match: Q6Q3H3 ((-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.0e-23
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           S+  D  G+LSLYEA+H R++ E ILD+AL F TTHLQ+    SS+  A++  +ALK PI
Sbjct: 149 SLSSDVRGMLSLYEATHFRVHGEDILDEALAFTTTHLQSATKHSSNPLAEQVVHALKQPI 208

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEIS 164
            K LPRL  RH  S+Y+ D S+   LL  AKLD+N LQ L+++EL +IS
Sbjct: 209 RKGLPRLEARHYFSVYQADDSHNKALLKLAKLDFNLLQKLHQKELSDIS 257

[Close]

BLAST of Lcy11g016940 vs. ExPASy Swiss-Prot
Match: G5CV45 (Viridiflorene synthase OS=Solanum lycopersicum OX=4081 GN=TPS32 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-22
Identity = 52/110 (47.27%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           S+  D  G+L+LYEASH+R + E IL++AL F+T HL++ A    S  + +  +AL+  +
Sbjct: 140 SLSNDIKGLLNLYEASHVRTHGEDILEEALAFSTAHLESAAPHLKSPLSKQVTHALEQSL 199

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           +KS+PR+ TR+ IS+YE++    D+LL FAKLDYN LQ L+++EL E+SR
Sbjct: 200 HKSIPRVETRYFISIYEEEEFKNDVLLRFAKLDYNLLQMLHKQELSEVSR 249

[Close]

BLAST of Lcy11g016940 vs. ExPASy Swiss-Prot
Match: Q9XJ32 (Vetispiradiene synthase 1 OS=Solanum tuberosum OX=4113 GN=PVS1 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-22
Identity = 51/110 (46.36%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           S+  D  G+L+LYEASH+R + E IL++AL F+T HL++ A    S  + +  +AL+  +
Sbjct: 148 SLCNDIKGLLNLYEASHVRTHGEDILEEALAFSTAHLESAAPHLKSPLSKQVTHALEQSL 207

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           +KS+PR+ TR+ IS+YE++    D+LL FAKLD+N LQ L+++EL E+SR
Sbjct: 208 HKSIPRVETRYFISIYEEEEQKNDVLLQFAKLDFNLLQMLHKQELSEVSR 257

[Close]

BLAST of Lcy11g016940 vs. ExPASy Swiss-Prot
Match: B2KSJ5 ((+)-gamma-cadinene synthase OS=Cucumis melo OX=3656 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.7e-22
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSS---RFADEAKYALK 114
           S+V+DE G+LSLYEASH+  + E +L++AL F TTHLQ      S+    FA E   ALK
Sbjct: 159 SLVEDERGLLSLYEASHMMGHGEALLEEALEFTTTHLQTYIHRYSNINPSFASEVSNALK 218

Query: 115 WPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
            PI KS+PR+  R  + +Y++ PS+ + LL F+KLD+N LQ L+++EL EI R
Sbjct: 219 LPIRKSVPRIKAREYLEIYQQHPSHNETLLEFSKLDFNILQKLHQKELSEICR 271

[Close]

BLAST of Lcy11g016940 vs. ExPASy Swiss-Prot
Match: B9SCB6 (Probable terpene synthase 2 OS=Ricinus communis OX=3988 GN=TPS2 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.7e-22
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 59  DESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIYKSL 118
           D  G+LSLYEA+H R++ EGILD AL F TT+L++I  + S   A +    L+ P+ KSL
Sbjct: 148 DLQGMLSLYEAAHFRVHGEGILDDALAFTTTYLESIVPNLSPPLAAQISRTLRQPLRKSL 207

Query: 119 PRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEIS 164
            R+  RH IS+Y++D S+ ++LLTFAKLD+N LQ L+++EL  IS
Sbjct: 208 ARVEARHFISIYQEDTSHNEVLLTFAKLDFNLLQKLHQKELKYIS 252

[Close]

BLAST of Lcy11g016940 vs. ExPASy TrEMBL
Match: A0A6J1CQS0 ((-)-germacrene D synthase-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111013331 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.2e-38
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           SMVKDE GILSLYEASHLR+N E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPI
Sbjct: 49  SMVKDECGILSLYEASHLRINGEDILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPI 108

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           YK+LPR MTRH ISLY+ DP   ++LLTF+KLD+N LQ LY++EL E SR
Sbjct: 109 YKALPRFMTRHYISLYDNDPLKSNVLLTFSKLDFNALQKLYQKELVEFSR 158

[Close]

BLAST of Lcy11g016940 vs. ExPASy TrEMBL
Match: A0A6J1CQA8 ((-)-germacrene D synthase-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013331 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.2e-38
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           SMVKDE GILSLYEASHLR+N E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPI
Sbjct: 149 SMVKDECGILSLYEASHLRINGEDILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPI 208

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           YK+LPR MTRH ISLY+ DP   ++LLTF+KLD+N LQ LY++EL E SR
Sbjct: 209 YKALPRFMTRHYISLYDNDPLKSNVLLTFSKLDFNALQKLYQKELVEFSR 258

[Close]

BLAST of Lcy11g016940 vs. ExPASy TrEMBL
Match: A0A6J1CQW1 ((-)-germacrene D synthase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013331 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.2e-38
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           SMVKDE GILSLYEASHLR+N E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPI
Sbjct: 149 SMVKDECGILSLYEASHLRINGEDILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPI 208

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           YK+LPR MTRH ISLY+ DP   ++LLTF+KLD+N LQ LY++EL E SR
Sbjct: 209 YKALPRFMTRHYISLYDNDPLKSNVLLTFSKLDFNALQKLYQKELVEFSR 258

[Close]

BLAST of Lcy11g016940 vs. ExPASy TrEMBL
Match: A0A6J1CQI4 ((-)-germacrene D synthase-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013399 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 80/110 (72.73%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           SMVKDE GILSLY+ASHL MN E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPI
Sbjct: 149 SMVKDECGILSLYQASHLGMNGENILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPI 208

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           YK++PR  TRH ISLY++DP    +LL+FAKLD+N LQ LY++EL E+SR
Sbjct: 209 YKAMPRXTTRHYISLYDRDPLKNSVLLSFAKLDFNALQKLYQKELAEVSR 258

[Close]

BLAST of Lcy11g016940 vs. ExPASy TrEMBL
Match: A0A6J1CR31 ((-)-germacrene D synthase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013399 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 80/110 (72.73%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           SMVKDE GILSLY+ASHL MN E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPI
Sbjct: 149 SMVKDECGILSLYQASHLGMNGENILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPI 208

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           YK++PR  TRH ISLY++DP    +LL+FAKLD+N LQ LY++EL E+SR
Sbjct: 209 YKAMPRXTTRHYISLYDRDPLKNSVLLSFAKLDFNALQKLYQKELAEVSR 258

[Close]

BLAST of Lcy11g016940 vs. NCBI nr
Match: XP_022143456.1 ((-)-germacrene D synthase-like isoform X1 [Momordica charantia])

HSP 1 Score: 169.5 bits (428), Expect = 2.5e-38
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           SMVKDE GILSLYEASHLR+N E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPI
Sbjct: 149 SMVKDECGILSLYEASHLRINGEDILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPI 208

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           YK+LPR MTRH ISLY+ DP   ++LLTF+KLD+N LQ LY++EL E SR
Sbjct: 209 YKALPRFMTRHYISLYDNDPLKSNVLLTFSKLDFNALQKLYQKELVEFSR 258

[Close]

BLAST of Lcy11g016940 vs. NCBI nr
Match: XP_022143458.1 ((-)-germacrene D synthase-like isoform X3 [Momordica charantia])

HSP 1 Score: 169.5 bits (428), Expect = 2.5e-38
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           SMVKDE GILSLYEASHLR+N E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPI
Sbjct: 49  SMVKDECGILSLYEASHLRINGEDILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPI 108

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           YK+LPR MTRH ISLY+ DP   ++LLTF+KLD+N LQ LY++EL E SR
Sbjct: 109 YKALPRFMTRHYISLYDNDPLKSNVLLTFSKLDFNALQKLYQKELVEFSR 158

[Close]

BLAST of Lcy11g016940 vs. NCBI nr
Match: XP_022143457.1 ((-)-germacrene D synthase-like isoform X2 [Momordica charantia])

HSP 1 Score: 169.5 bits (428), Expect = 2.5e-38
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           SMVKDE GILSLYEASHLR+N E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPI
Sbjct: 149 SMVKDECGILSLYEASHLRINGEDILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPI 208

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           YK+LPR MTRH ISLY+ DP   ++LLTF+KLD+N LQ LY++EL E SR
Sbjct: 209 YKALPRFMTRHYISLYDNDPLKSNVLLTFSKLDFNALQKLYQKELVEFSR 258

[Close]

BLAST of Lcy11g016940 vs. NCBI nr
Match: XP_022143526.1 ((-)-germacrene D synthase-like isoform X1 [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-37
Identity = 80/110 (72.73%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           SMVKDE GILSLY+ASHL MN E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPI
Sbjct: 149 SMVKDECGILSLYQASHLGMNGENILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPI 208

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           YK++PR  TRH ISLY++DP    +LL+FAKLD+N LQ LY++EL E+SR
Sbjct: 209 YKAMPRXTTRHYISLYDRDPLKNSVLLSFAKLDFNALQKLYQKELAEVSR 258

[Close]

BLAST of Lcy11g016940 vs. NCBI nr
Match: XP_022143527.1 ((-)-germacrene D synthase-like isoform X2 [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-37
Identity = 80/110 (72.73%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPI 114
           SMVKDE GILSLY+ASHL MN E ILDKAL F TTHLQA+AMDSSS FA+EAKYALKWPI
Sbjct: 149 SMVKDECGILSLYQASHLGMNGENILDKALAFTTTHLQAMAMDSSSPFAEEAKYALKWPI 208

Query: 115 YKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           YK++PR  TRH ISLY++DP    +LL+FAKLD+N LQ LY++EL E+SR
Sbjct: 209 YKAMPRXTTRHYISLYDRDPLKNSVLLSFAKLDFNALQKLYQKELAEVSR 258

[Close]

BLAST of Lcy11g016940 vs. TAIR 10
Match: AT5G23960.1 (terpene synthase 21 )

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-18
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 56  MVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIY 115
           +V D  G+LSLYEA+    + E I+D+AL F+ +HL+ I+  SS   A   K ALK P +
Sbjct: 139 LVTDAYGMLSLYEAAQWGTHGEDIIDEALAFSRSHLEEISSRSSPHLAIRIKNALKHPYH 198

Query: 116 KSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           K + R+ TR  IS YE++ S    LL FAK+D+N LQ L+R EL  ++R
Sbjct: 199 KGISRIETRQYISYYEEEESCDPTLLEFAKIDFNLLQILHREELACVTR 247

[Close]

BLAST of Lcy11g016940 vs. TAIR 10
Match: AT5G23960.2 (terpene synthase 21 )

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-18
Identity = 49/109 (44.95%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 56  MVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIAMDSSSRFADEAKYALKWPIY 115
           +V D  G+LSLYEA+    + E I+D+AL F+ +HL+ I+  SS   A   K ALK P +
Sbjct: 139 LVTDAYGMLSLYEAAQWGTHGEDIIDEALAFSRSHLEEISSRSSPHLAIRIKNALKHPYH 198

Query: 116 KSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
           K + R+ TR  IS YE++ S    LL FAK+D+N LQ L+R EL  ++R
Sbjct: 199 KGISRIETRQYISYYEEEESCDPTLLEFAKIDFNLLQILHREELACVTR 247

[Close]

BLAST of Lcy11g016940 vs. TAIR 10
Match: AT3G29410.1 (Terpenoid cyclases/Protein prenyltransferases superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-13
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAIA-MDSSSRFADEAKYALKWP 114
           S+V D  G+L LYEA+HL    E I+D+AL+FA  HL+ +A  ++SS      +  L   
Sbjct: 193 SLVGDVRGLLQLYEAAHLGAPSEDIMDEALSFARYHLEPLAGTETSSNLFKHVENVLYRA 252

Query: 115 IYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
            Y S+  L+ R  IS Y+++    + LL F+KL++N  Q  Y +EL  ++R
Sbjct: 253 RYHSIEILVARQYISFYDQEEDQDETLLRFSKLNFNFCQMHYVKELKIVTR 303

[Close]

BLAST of Lcy11g016940 vs. TAIR 10
Match: AT1G31950.1 (Terpenoid cyclases/Protein prenyltransferases superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-12
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 55  SMVKDESGILSLYEASHLRMNVEGILDKALTFATTHLQAI----AMDSSSRFADEAKYAL 114
           S+V+D  G+L L+E +HL    E I+D+AL+F   HL+++    A  +S       + +L
Sbjct: 194 SLVRDFRGMLQLFEVAHLGTPCEVIMDEALSFTRNHLESLTSGNASTASPHLLKHIQNSL 253

Query: 115 KWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLDYNTLQNLYRRELCEISR 165
             P Y ++  L+ R  IS YE++  + +ILL FAKL++N  Q  Y +EL  +++
Sbjct: 254 YIPRYCNIEVLVAREYISYYEQEEGHDEILLKFAKLNFNFCQFHYVQELKTLTK 307

[Close]

BLAST of Lcy11g016940 vs. TAIR 10
Match: AT4G15870.1 (terpene synthase 1 )

HSP 1 Score: 68.6 bits (166), Expect = 5.5e-12
Identity = 44/137 (32.12%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 38  FNTMGYSICL--------QTKWEMVSMVKDESGILSLYEASHLRMNVEGILDKALTFATT 97
           F T GY++          + +  M S+  D  G++SLYEA+HLR   E IL++AL+F T 
Sbjct: 173 FRTYGYNMSTDVFKRFKGENEKFMESITSDVKGMVSLYEAAHLRTTREDILEEALSFTTR 232

Query: 98  HLQAIAM--DSSSRFADEAKYALKWPIYKSLPRLMTRHCISLYEKDPSNKDILLTFAKLD 157
           +L+++A    SS       + AL  P + +   +  R  IS YE++  +  +LL FAK++
Sbjct: 233 NLESLARAGASSPHILMRIRNALCMPQHYNAEMIFAREYISFYEQEEDHNKMLLRFAKIN 292

Query: 158 YNTLQNLYRRELCEISR 165
           +  LQ  + +EL  +++
Sbjct: 293 FKFLQLNWIQELKTLTK 309

The following BLAST results are available for this feature:

BLAST of Lcy11g016940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6Q3H3	3.0e-23	51.38	(-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 S...	[more]
G5CV45	2.0e-22	47.27	Viridiflorene synthase OS=Solanum lycopersicum OX=4081 GN=TPS32 PE=1 SV=1	[more]
Q9XJ32	2.6e-22	46.36	Vetispiradiene synthase 1 OS=Solanum tuberosum OX=4113 GN=PVS1 PE=1 SV=1	[more]
B2KSJ5	5.7e-22	48.67	(+)-gamma-cadinene synthase OS=Cucumis melo OX=3656 PE=1 SV=1	[more]
B9SCB6	9.7e-22	50.48	Probable terpene synthase 2 OS=Ricinus communis OX=3988 GN=TPS2 PE=3 SV=1	[more]

BLAST of Lcy11g016940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQS0	1.2e-38	75.45	(-)-germacrene D synthase-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1CQA8	1.2e-38	75.45	(-)-germacrene D synthase-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1CQW1	1.2e-38	75.45	(-)-germacrene D synthase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1CQI4	1.7e-37	72.73	(-)-germacrene D synthase-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1CR31	1.7e-37	72.73	(-)-germacrene D synthase-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of Lcy11g016940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143456.1	2.5e-38	75.45	(-)-germacrene D synthase-like isoform X1 [Momordica charantia]	[more]
XP_022143458.1	2.5e-38	75.45	(-)-germacrene D synthase-like isoform X3 [Momordica charantia]	[more]
XP_022143457.1	2.5e-38	75.45	(-)-germacrene D synthase-like isoform X2 [Momordica charantia]	[more]
XP_022143526.1	3.5e-37	72.73	(-)-germacrene D synthase-like isoform X1 [Momordica charantia]	[more]
XP_022143527.1	3.5e-37	72.73	(-)-germacrene D synthase-like isoform X2 [Momordica charantia]	[more]

BLAST of Lcy11g016940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23960.1	3.0e-18	44.95	terpene synthase 21	[more]
AT5G23960.2	3.0e-18	44.95	terpene synthase 21	[more]
AT3G29410.1	8.5e-13	37.84	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]
AT1G31950.1	5.5e-12	35.09	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]
AT4G15870.1	5.5e-12	32.12	terpene synthase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001906	Terpene synthase, N-terminal domain	PFAM	PF01397	Terpene_synth	coord: 55..110 e-value: 1.1E-10 score: 41.5
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 136..164 e-value: 5.5E-34 score: 119.4
IPR036965	Terpene synthase, N-terminal domain superfamily	GENE3D	1.50.10.130		coord: 55..135 e-value: 5.5E-34 score: 119.4
None	No IPR available	PANTHER	PTHR31225	OS04G0344100 PROTEIN-RELATED	coord: 55..164
None	No IPR available	PANTHER	PTHR31225:SF134	(-)-GERMACRENE D SYNTHASE-LIKE	coord: 55..164
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 54..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g016940.1	Lcy11g016940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016102	diterpenoid biosynthetic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0010333	terpene synthase activity
molecular_function	GO:0016829	lyase activity