Lcy11g016780 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g016780
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposable element Tf2
LocationChr11: 40465536 .. 40465754 (+)
RNA-Seq ExpressionLcy11g016780
SyntenyLcy11g016780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCTTTGGCAGGAGCAACTTCAGAGTCCGATCTTCAAGCCGTCATACAAACAGTCGTCCAAACTCTTTCAGATAACGACGACGTTCAAGAAGGAGAAAATCCTAAAGCAACCGAAGCAGCTTCAGAGTCTTCTGTCAATGATATCGAAGATGAATATGACCCATATCTCAACTTCAATATTTTAGACCCTTACTATGATTCCCAATCAGGATGA

mRNA sequence

ATGACGTCTTTGGCAGGAGCAACTTCAGAGTCCGATCTTCAAGCCGTCATACAAACAGTCGTCCAAACTCTTTCAGATAACGACGACGTTCAAGAAGGAGAAAATCCTAAAGCAACCGAAGCAGCTTCAGAGTCTTCTGTCAATGATATCGAAGATGAATATGACCCATATCTCAACTTCAATATTTTAGACCCTTACTATGATTCCCAATCAGGATGA

Coding sequence (CDS)

ATGACGTCTTTGGCAGGAGCAACTTCAGAGTCCGATCTTCAAGCCGTCATACAAACAGTCGTCCAAACTCTTTCAGATAACGACGACGTTCAAGAAGGAGAAAATCCTAAAGCAACCGAAGCAGCTTCAGAGTCTTCTGTCAATGATATCGAAGATGAATATGACCCATATCTCAACTTCAATATTTTAGACCCTTACTATGATTCCCAATCAGGATGA

Protein sequence

MTSLAGATSESDLQAVIQTVVQTLSDNDDVQEGENPKATEAASESSVNDIEDEYDPYLNFNILDPYYDSQSG
Homology
BLAST of Lcy11g016780 vs. ExPASy TrEMBL
Match: A0A5A7STS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00870 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-09
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 1  MTSLAGATSESDLQAVIQTVVQTLSDNDDVQEGENPKATEAASESSVNDIEDEYDPYLNF 60
          MTS+AGA SESDLQAVI+TVV   ++N D  + ++P+     S+SSVNDI+   DPY NF
Sbjct: 1  MTSIAGAKSESDLQAVIETVV---NNNSDDNKQDDPEDITNLSDSSVNDIDFANDPYYNF 60

Query: 61 NILDPYYDSQSG 73
          +I DPY DSQ G
Sbjct: 61 DISDPYLDSQPG 69

BLAST of Lcy11g016780 vs. ExPASy TrEMBL
Match: A0A5A7VA49 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00290 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.6e-09
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 0

Query: 1  MTSLAGATSESDLQAVIQTVVQTLSDNDDVQEGENPKATEAASESSVNDIEDEYDPYLNF 60
          MTS+AGA SE+DLQAV++ V+ T+S+++   + ++P+  E +S+SSVNDIE + DPY NF
Sbjct: 1  MTSIAGAKSEADLQAVMEIVIHTISNDN---KEDDPEDNEISSDSSVNDIEFDNDPYYNF 60

Query: 61 NILDPYYDS 70
          +I DPY DS
Sbjct: 61 DIFDPYLDS 66

BLAST of Lcy11g016780 vs. ExPASy TrEMBL
Match: A0A5D3BD22 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001850 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 1  MTSLAGATSESDLQAVIQTVVQTLSDNDDVQEGENPKATEAASESSVNDIEDEYDPYLNF 60
          MTS+AGA SE+DLQAV++TVV   + ND+ Q   +P+     S+SSVNDI  E DPY NF
Sbjct: 1  MTSIAGAKSEADLQAVMETVVNN-NSNDNKQ--NDPEDITNLSDSSVNDINFENDPYYNF 60

Query: 61 NILDPYYDSQSG 73
          +I DPY DSQ G
Sbjct: 61 DIFDPYLDSQPG 69

BLAST of Lcy11g016780 vs. ExPASy TrEMBL
Match: A0A5A7UEA0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00850 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 1   MTSLAGATSESDLQAVIQTVVQTLSDNDDVQEGENPKATEAASESSVNDIEDEYDPYLNF 60
           MTS+AGA SE+DLQA+++TVV  + D++   + ++P+ T  +S+SSVN+I+ + D Y NF
Sbjct: 133 MTSIAGAKSEADLQAIMKTVVHNIFDDN---KEDDPEDTRISSDSSVNNIDSDNDLYYNF 192

Query: 61  NILDPYYDSQSG 73
           +I DPY DSQ G
Sbjct: 193 DIFDPYLDSQPG 201

BLAST of Lcy11g016780 vs. ExPASy TrEMBL
Match: A0A5A7U8X4 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001080 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 1   MTSLAGATSESDLQAVIQTVVQTLSDNDDVQEGENPKATEAASESSVNDIEDEYDPYLNF 60
           MTS+AGA SE+DLQAV++TVV   ++N D  + ++P+     S+SSVNDI+   DPY NF
Sbjct: 133 MTSIAGAKSEADLQAVMETVV---NNNSDDNKQDDPEDIINISDSSVNDIDFVNDPYYNF 192

Query: 61  NILDPYYDSQSG 73
           +I D Y DSQSG
Sbjct: 193 DISDLYLDSQSG 201

BLAST of Lcy11g016780 vs. NCBI nr
Match: KAA0033913.1 (hypothetical protein E6C27_scaffold43059G001040 [Cucumis melo var. makuwa] >TYK01295.1 hypothetical protein E5676_scaffold49G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 1  MTSLAGATSESDLQAVIQTVVQTLSDNDDVQEGENPKATEAASESSVNDIEDEYDPYLNF 60
          MTS+AGA SESDLQAVI+TVV   ++N D  + ++P+     S+SSVNDI+   DPY NF
Sbjct: 1  MTSIAGAKSESDLQAVIETVV---NNNSDDNKQDDPEDITNLSDSSVNDIDFANDPYYNF 60

Query: 61 NILDPYYDSQSG 73
          +I DPY DSQ G
Sbjct: 61 DISDPYLDSQPG 69

BLAST of Lcy11g016780 vs. NCBI nr
Match: KAA0062549.1 (hypothetical protein E6C27_scaffold79G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-08
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 0

Query: 1  MTSLAGATSESDLQAVIQTVVQTLSDNDDVQEGENPKATEAASESSVNDIEDEYDPYLNF 60
          MTS+AGA SE+DLQAV++ V+ T+S+++   + ++P+  E +S+SSVNDIE + DPY NF
Sbjct: 1  MTSIAGAKSEADLQAVMEIVIHTISNDN---KEDDPEDNEISSDSSVNDIEFDNDPYYNF 60

Query: 61 NILDPYYDS 70
          +I DPY DS
Sbjct: 61 DIFDPYLDS 66

BLAST of Lcy11g016780 vs. NCBI nr
Match: KAA0065792.1 (hypothetical protein E6C27_scaffold37G00900 [Cucumis melo var. makuwa] >TYJ96531.1 hypothetical protein E5676_scaffold546G001850 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-08
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 1  MTSLAGATSESDLQAVIQTVVQTLSDNDDVQEGENPKATEAASESSVNDIEDEYDPYLNF 60
          MTS+AGA SE+DLQAV++TVV   + ND+ Q   +P+     S+SSVNDI  E DPY NF
Sbjct: 1  MTSIAGAKSEADLQAVMETVVNN-NSNDNKQ--NDPEDITNLSDSSVNDINFENDPYYNF 60

Query: 61 NILDPYYDSQSG 73
          +I DPY DSQ G
Sbjct: 61 DIFDPYLDSQPG 69

BLAST of Lcy11g016780 vs. NCBI nr
Match: KAA0051819.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.5e-08
Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 1   MTSLAGATSESDLQAVIQTVVQTLSDNDDVQEGENPKATEAASESSVNDIEDEYDPYLNF 60
           MTS+AGA SE+DLQA+++TVV  + D++   + ++P+ T  +S+SSVN+I+ + D Y NF
Sbjct: 133 MTSIAGAKSEADLQAIMKTVVHNIFDDN---KEDDPEDTRISSDSSVNNIDSDNDLYYNF 192

Query: 61  NILDPYYDSQSG 73
           +I DPY DSQ G
Sbjct: 193 DIFDPYLDSQPG 201

BLAST of Lcy11g016780 vs. NCBI nr
Match: KAA0050626.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-07
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 1   MTSLAGATSESDLQAVIQTVVQTLSDNDDVQEGENPKATEAASESSVNDIEDEYDPYLNF 60
           MTS+AGA SE+DLQAV++TVV   ++N D  + ++P+     S+SSVNDI+   DPY NF
Sbjct: 133 MTSIAGAKSEADLQAVMETVV---NNNSDDNKQDDPEDIINISDSSVNDIDFVNDPYYNF 192

Query: 61  NILDPYYDSQSG 73
           +I D Y DSQSG
Sbjct: 193 DISDLYLDSQSG 201

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7STS65.6e-0956.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VA499.6e-0953.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BD222.8e-0856.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UEA03.6e-0850.00Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7U8X42.4e-0754.17Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
Match NameE-valueIdentityDescription
KAA0033913.11.2e-0856.94hypothetical protein E6C27_scaffold43059G001040 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0062549.12.0e-0853.62hypothetical protein E6C27_scaffold79G00290 [Cucumis melo var. makuwa][more]
KAA0065792.15.8e-0856.94hypothetical protein E6C27_scaffold37G00900 [Cucumis melo var. makuwa] >TYJ96531... [more]
KAA0051819.17.5e-0850.00Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransp... [more]
KAA0050626.14.9e-0754.17Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransp... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g016780.1Lcy11g016780.1mRNA