Lcy11g016600 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g016600
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	PMD domain-containing protein
Location	Chr11: 40062945 .. 40063421 (-)
RNA-Seq Expression	Lcy11g016600
Synteny	Lcy11g016600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGTGTACTATCACTCTACAGGACGTTGTTGTACAGTTTGGATTGCCTATAAAGGGCACGACGTTGACAGGGTCAGTAAACAAAGACTGGCCTGCCGTTTGTCAGGACTTAATGGGGGTTCAAGTCCCCAATAGGGTATTGGTTGAAGCTTGTCTAAGCCTATCTTGGTTAGTTGCACAATTTAATAATTTCGTCCATCTACCGGACGACGCCGACGAAGAAGACCTTCGACGTTATGCACGAGCCATATATACTATCACTGATCGGAGGCATGTTATTCACTGACAAGTCTGCCAGTAGGGTGCACCTAATGTATCTACCCCTATTAGAAGATTTTGATGAGGCGTGGACATATAGCTGGGGTGCAGGATGTCTCGCGTTGTTATACAGGAACCTCTGCAAGGGTTTGGTTATAGATGCCAGAGAGCTGGACGGTTCACTTATATTGCTTTAGTTGTGGACATGGGATAG

mRNA sequence

ATGGCGGAGTGTACTATCACTCTACAGGACGTTGTTGTACAGTTTGGATTGCCTATAAAGGGCACGACGTTGACAGGGTCAGTAAACAAAGACTGGCCTGCCGTTTGTCAGGACTTAATGGGGGTTCAAGTCCCCAATAGGGTATTGGTTGAAGCTTGTCTAAGCCTATCTTGGATGTCTCGCGTTGTTATACAGGAACCTCTGCAAGGGTTTGGTTATAGATGCCAGAGAGCTGGACGGTTCACTTATATTGCTTTAGTTGTGGACATGGGATAG

Coding sequence (CDS)

ATGGCGGAGTGTACTATCACTCTACAGGACGTTGTTGTACAGTTTGGATTGCCTATAAAGGGCACGACGTTGACAGGGTCAGTAAACAAAGACTGGCCTGCCGTTTGTCAGGACTTAATGGGGGTTCAAGTCCCCAATAGGGTATTGGTTGAAGCTTGTCTAAGCCTATCTTGGATGTCTCGCGTTGTTATACAGGAACCTCTGCAAGGGTTTGGTTATAGATGCCAGAGAGCTGGACGGTTCACTTATATTGCTTTAGTTGTGGACATGGGATAG

Protein sequence

MAECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWMSRVVIQEPLQGFGYRCQRAGRFTYIALVVDMG

Homology

[Close]

BLAST of Lcy11g016600 vs. ExPASy Swiss-Prot
Match: Q9LNG5 (Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana OX=3702 GN=MAIL3 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.6e-05
Identity = 22/57 (38.60%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 3   ECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWM 60
           E T+TLQDV +  GL + G  +TGS   +W  +C+DL+G +   + L  + +SL+W+
Sbjct: 105 EITVTLQDVNILLGLRVDGPAVTGSTKYNWADLCEDLLGHRPGPKDLHGSHVSLAWL 161

[Close]

BLAST of Lcy11g016600 vs. ExPASy TrEMBL
Match: A0A6J1DE57 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019957 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.4e-09
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 3   ECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWMSRV 62
           ECTITLQDV +QFGLP+ G  +TGS+  DW  +C+DL+GV+ P + L  + LSL W++  
Sbjct: 410 ECTITLQDVAIQFGLPVDGEPVTGSLQHDWATICEDLLGVR-PTQ-LKGSRLSLPWLASQ 469

Query: 63  VIQEPLQGFGYRCQRAGRFTYIALV 88
             + P++      +R  R   + L+
Sbjct: 470 FTKLPVEADEVMIKRYTRAYIMQLI 492

[Close]

BLAST of Lcy11g016600 vs. ExPASy TrEMBL
Match: A0A6J1DF94 (uncharacterized protein LOC111019957 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019957 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.4e-09
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 3   ECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWMSRV 62
           ECTITLQDV +QFGLP+ G  +TGS+  DW  +C+DL+GV+ P + L  + LSL W++  
Sbjct: 410 ECTITLQDVAIQFGLPVDGEPVTGSLQHDWATICEDLLGVR-PTQ-LKGSRLSLPWLASQ 469

Query: 63  VIQEPLQGFGYRCQRAGRFTYIALV 88
             + P++      +R  R   + L+
Sbjct: 470 FTKLPVEADEVMIKRYTRAYIMQLI 492

[Close]

BLAST of Lcy11g016600 vs. ExPASy TrEMBL
Match: A0A6A5NGD8 (PMD domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00038764 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 1   MAECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWMS 60
           + ECT+TL+DV  Q GLPI G  +TG  N DW  VC +L+G     R +V  C+ +SW+ 
Sbjct: 86  IGECTVTLEDVAYQLGLPIDGNIVTGPTNMDWNVVCHNLLGAVPNERQIVGQCIQMSWLD 145

Query: 61  RVVIQEP 68
               Q P
Sbjct: 146 STFQQLP 152

[Close]

BLAST of Lcy11g016600 vs. ExPASy TrEMBL
Match: A0A6A5NL21 (PMD domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00038407 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 1   MAECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWMS 60
           + ECT+TL+DV  Q GLPI G  +TG  N DW  VCQ+L+GV   +R +V   + +SW+ 
Sbjct: 60  IGECTVTLEDVTYQLGLPIDGDIVTGPTNMDWNVVCQNLLGVVPSDRQIVGQRIQMSWLD 119

Query: 61  RVVIQEP 68
               Q P
Sbjct: 120 STFQQLP 126

[Close]

BLAST of Lcy11g016600 vs. ExPASy TrEMBL
Match: A0A6A5PMY2 (PMD domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00039888 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.6e-08
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 1  MAECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWMS 60
          + ECTITL+D+  Q GLPI G  +TG+ N DW  VC +L+G    NR +V   + +SW++
Sbjct: 8  IGECTITLEDITCQLGLPIDGDVVTGATNMDWDVVCLNLLGAIPTNRHIVGQRIQMSWLN 67

Query: 61 RVVIQEP 68
              Q P
Sbjct: 68 STFQQLP 74

[Close]

BLAST of Lcy11g016600 vs. NCBI nr
Match: XP_038906359.1 (serine/threonine-protein phosphatase 7 long form homolog [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 3   ECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWMSRV 62
           ECTITLQD+ +QFGLP+ G  +TGS+  DWP +C+DL+GV+ P   L  + LSL W++  
Sbjct: 277 ECTITLQDIAIQFGLPVDGKVVTGSLQHDWPMLCEDLLGVRPPQPQLRGSRLSLPWLTSR 336

Query: 63  VIQEPLQGFGYRCQRAGRFTYIALV 88
             + PL+      +R  R   + L+
Sbjct: 337 FTKLPLEADEVMIKRYTRAYIMQLI 361

[Close]

BLAST of Lcy11g016600 vs. NCBI nr
Match: XP_022152173.1 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 3   ECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWMSRV 62
           ECTITLQDV +QFGLP+ G  +TGS+  DW  +C+DL+GV+ P + L  + LSL W++  
Sbjct: 410 ECTITLQDVAIQFGLPVDGEPVTGSLQHDWATICEDLLGVR-PTQ-LKGSRLSLPWLASQ 469

Query: 63  VIQEPLQGFGYRCQRAGRFTYIALV 88
             + P++      +R  R   + L+
Sbjct: 470 FTKLPVEADEVMIKRYTRAYIMQLI 492

[Close]

BLAST of Lcy11g016600 vs. NCBI nr
Match: XP_022152174.1 (uncharacterized protein LOC111019957 isoform X2 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 3   ECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWMSRV 62
           ECTITLQDV +QFGLP+ G  +TGS+  DW  +C+DL+GV+ P + L  + LSL W++  
Sbjct: 410 ECTITLQDVAIQFGLPVDGEPVTGSLQHDWATICEDLLGVR-PTQ-LKGSRLSLPWLASQ 469

Query: 63  VIQEPLQGFGYRCQRAGRFTYIALV 88
             + P++      +R  R   + L+
Sbjct: 470 FTKLPVEADEVMIKRYTRAYIMQLI 492

[Close]

BLAST of Lcy11g016600 vs. NCBI nr
Match: KAF1882120.1 (hypothetical protein Lal_00038764 [Lupinus albus])

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-08
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 0


Query: 1   MAECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWMS 60
           + ECT+TL+DV  Q GLPI G  +TG  N DW  VC +L+G     R +V  C+ +SW+ 
Sbjct: 86  IGECTVTLEDVAYQLGLPIDGNIVTGPTNMDWNVVCHNLLGAVPNERQIVGQCIQMSWLD 145

Query: 61  RVVIQEP 68
               Q P
Sbjct: 146 STFQQLP 152

[Close]

BLAST of Lcy11g016600 vs. NCBI nr
Match: KAF1883913.1 (hypothetical protein Lal_00038407 [Lupinus albus])

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-08
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 1   MAECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWMS 60
           + ECT+TL+DV  Q GLPI G  +TG  N DW  VCQ+L+GV   +R +V   + +SW+ 
Sbjct: 60  IGECTVTLEDVTYQLGLPIDGDIVTGPTNMDWNVVCQNLLGVVPSDRQIVGQRIQMSWLD 119

Query: 61  RVVIQEP 68
               Q P
Sbjct: 120 STFQQLP 126

[Close]

BLAST of Lcy11g016600 vs. TAIR 10
Match: AT1G48120.1 (hydrolases;protein serine/threonine phosphatases )

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-06
Identity = 22/57 (38.60%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 3   ECTITLQDVVVQFGLPIKGTTLTGSVNKDWPAVCQDLMGVQVPNRVLVEACLSLSWM 60
           E T+TLQDV +  GL + G  +TGS   +W  +C+DL+G +   + L  + +SL+W+
Sbjct: 105 EITVTLQDVNILLGLRVDGPAVTGSTKYNWADLCEDLLGHRPGPKDLHGSHVSLAWL 161

The following BLAST results are available for this feature:

BLAST of Lcy11g016600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LNG5	4.6e-05	38.60	Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana...	[more]

BLAST of Lcy11g016600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DE57	5.4e-09	41.18	serine/threonine-protein phosphatase 7 long form homolog isoform X1 OS=Momordica...	[more]
A0A6J1DF94	5.4e-09	41.18	uncharacterized protein LOC111019957 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6A5NGD8	1.2e-08	43.28	PMD domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00038764 PE=4 SV=1	[more]
A0A6A5NL21	2.1e-08	44.78	PMD domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00038407 PE=4 SV=1	[more]
A0A6A5PMY2	4.6e-08	43.28	PMD domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00039888 PE=4 SV=1	[more]

BLAST of Lcy11g016600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906359.1	3.2e-11	42.35	serine/threonine-protein phosphatase 7 long form homolog [Benincasa hispida]	[more]
XP_022152173.1	1.1e-08	41.18	serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Momordica c...	[more]
XP_022152174.1	1.1e-08	41.18	uncharacterized protein LOC111019957 isoform X2 [Momordica charantia]	[more]
KAF1882120.1	2.5e-08	43.28	hypothetical protein Lal_00038764 [Lupinus albus]	[more]
KAF1883913.1	4.3e-08	44.78	hypothetical protein Lal_00038407 [Lupinus albus]	[more]

BLAST of Lcy11g016600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48120.1	3.3e-06	38.60	hydrolases;protein serine/threonine phosphatases	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g016600.1	Lcy11g016600.1	mRNA