Lcy11g016310 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g016310
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	26S proteasome non-ATPase regulatory subunit 1 homolog
Location	Chr11: 39528022 .. 39528710 (-)
RNA-Seq Expression	Lcy11g016310
Synteny	Lcy11g016310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCTTGGTGAGCTCGGCTGGTGGGCTTTTGGCAATGCTTAATGAGACCCATCCTTTGCTCAAGCTTCATGCTTTGTCGAATCTCAACAATTTAGTTGACAACTTCTGGCCTGAGATCTCCACCAGCGTTCCTGTAATGTACGAAATTTGCTTTCTCTTTCTTCTCTCGATTAAAATTTTCCTTTTATATAAGTTTTAATTTGTTGGGTTCTTAGATTTTGTACTTGGGTGTTGTTTGTTTTTGGTTTTCATGGCTTGTAGGGCTGTTAATTAACGAGGGAGAGAATGGATTATTTATTTTTGGTTATGGATTTATCATGGAAAGGAAGGGGCTCGTTCTAGATCTGGCCATTCATTCCAGCTGGGTTTCGAAGGGGGAACCCCTTCTTTTCTTTTTTTTTTTAACTGGTCACTGGCGGCAGAGAAGAAGAGGGAGAGAGAGAGTCCGGCAGTGAGAGAAAGAGACAGTCCGGCGGTGAGAGAAAGAGAGGGACGATGAGAGAAGGAAAGGGTGAGGGAGAAAGAAAGAAGGAAGAAAAAAAGAGAAAAAAAATGTCGGTGACGGTGGGCGGCCGTCGGCAACGGCGGGTAGCGGCGATCAGCGACGGTGACCGAAGGTTTGGTGGGAATGTTGAAGAGAAGGAGGAGGTTGATGATGATGATAGTGTTGAAGATGAAGAATAA

mRNA sequence

ATGGCGACCTTGGTGAGCTCGGCTGGTGGGCTTTTGGCAATGCTTAATGAGACCCATCCTTTGCTCAAGCTTCATGCTTTGTCGAATCTCAACAATTTAGTTGACAACTTCTGGCCTGAGATCTCCACCAGCGTTCCTGTAATAGAAGAAGAGGGAGAGAGAGAGTCCGGCAGTGAGAGAAAGAGACAGTCCGGCGGTGAGAGAAAGAGAGGGACGATGAGAGAAGGAAAGGGTGAGGGAGAAAGAAAGAAGGAAGAAAAAAAGAGAAAAAAAATGTCGGTGACGGTGGGCGGCCGTCGGCAACGGCGGGTAGCGGCGATCAGCGACGGTGACCGAAGGTTTGGTGGGAATGTTGAAGAGAAGGAGGAGGTTGATGATGATGATAGTGTTGAAGATGAAGAATAA

Coding sequence (CDS)

ATGGCGACCTTGGTGAGCTCGGCTGGTGGGCTTTTGGCAATGCTTAATGAGACCCATCCTTTGCTCAAGCTTCATGCTTTGTCGAATCTCAACAATTTAGTTGACAACTTCTGGCCTGAGATCTCCACCAGCGTTCCTGTAATAGAAGAAGAGGGAGAGAGAGAGTCCGGCAGTGAGAGAAAGAGACAGTCCGGCGGTGAGAGAAAGAGAGGGACGATGAGAGAAGGAAAGGGTGAGGGAGAAAGAAAGAAGGAAGAAAAAAAGAGAAAAAAAATGTCGGTGACGGTGGGCGGCCGTCGGCAACGGCGGGTAGCGGCGATCAGCGACGGTGACCGAAGGTTTGGTGGGAATGTTGAAGAGAAGGAGGAGGTTGATGATGATGATAGTGTTGAAGATGAAGAATAA

Protein sequence

MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSERKRQSGGERKRGTMREGKGEGERKKEEKKRKKMSVTVGGRRQRRVAAISDGDRRFGGNVEEKEEVDDDDSVEDEE

Homology

[Close]

BLAST of Lcy11g016310 vs. ExPASy Swiss-Prot
Match: O48844 (26S proteasome non-ATPase regulatory subunit 1 homolog A OS=Arabidopsis thaliana OX=3702 GN=RPN2A PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-16
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1  MAT-LVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSE 60
          MAT +VSSAGGLLAMLNE HP+LKLHALSNLNNLVD FWPEISTSVP+IE   E E    
Sbjct: 1  MATPMVSSAGGLLAMLNEPHPVLKLHALSNLNNLVDQFWPEISTSVPIIESLYEDEEFDL 60

Query: 61 RKRQ 64
           +RQ
Sbjct: 61 HQRQ 64

[Close]

BLAST of Lcy11g016310 vs. ExPASy Swiss-Prot
Match: Q9MAT0 (26S proteasome non-ATPase regulatory subunit 1 homolog B OS=Arabidopsis thaliana OX=3702 GN=RPN2B PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.1e-14
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 2  ATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSERK 61
          A +VSSAGGLLAMLNE HP LKLHALS L  LVD FWPEISTSVP+IE   E E   + +
Sbjct: 3  AAMVSSAGGLLAMLNEPHPSLKLHALSYLIRLVDQFWPEISTSVPIIESLYEDEEFDQHQ 62

Query: 62 RQ 64
          RQ
Sbjct: 63 RQ 64

[Close]

BLAST of Lcy11g016310 vs. ExPASy Swiss-Prot
Match: Q9V3P6 (26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster OX=7227 GN=Rpn2 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.3e-05
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 5  VSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSERK 62
          ++SA G++++L+E  P LK+ AL  L+N+VD FWPEIS S+  IE   E  S  E K
Sbjct: 3  LTSAAGIISLLDEPMPDLKVFALKKLDNIVDEFWPEISESIEKIEMLHEDRSFPENK 59

[Close]

BLAST of Lcy11g016310 vs. ExPASy Swiss-Prot
Match: O74762 (26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpn2 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.4e-04
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 3  TLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSERK 62
          ++++SAGGL+A+L+E    L++HAL  +   +D  WPEIS  V  IE   E  S  ER+
Sbjct: 10 SIITSAGGLMALLDEQERELQVHALLKIYEFIDQLWPEISDDVTKIEVMYEDHSFPERE 68

[Close]

BLAST of Lcy11g016310 vs. ExPASy TrEMBL
Match: A0A6J1KXV6 (26S proteasome non-ATPase regulatory subunit 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111499195 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSER 60
          MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIE   E E   + 
Sbjct: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIESLYEDEEFDQH 60

Query: 61 KRQ 64
          +RQ
Sbjct: 61 QRQ 63

[Close]

BLAST of Lcy11g016310 vs. ExPASy TrEMBL
Match: A0A6J1CA52 (26S proteasome non-ATPase regulatory subunit 1 homolog OS=Momordica charantia OX=3673 GN=LOC111009612 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.6e-17
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSER 60
          MATLVSSAGGLLAMLNE+HPLLKLHALSNLNNLVDNFWPEISTSVPVIE   E E   + 
Sbjct: 1  MATLVSSAGGLLAMLNESHPLLKLHALSNLNNLVDNFWPEISTSVPVIESLYEDEEFDQH 60

Query: 61 KRQ 64
          +RQ
Sbjct: 61 QRQ 63

[Close]

BLAST of Lcy11g016310 vs. ExPASy TrEMBL
Match: A0A6J1KGU3 (26S proteasome non-ATPase regulatory subunit 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494220 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.7e-17
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSER 60
          MATLVSSAGGLLAMLNE+HPLLKLHALSNLNNLVDNFWPEISTSVP+IE   E E   + 
Sbjct: 1  MATLVSSAGGLLAMLNESHPLLKLHALSNLNNLVDNFWPEISTSVPIIESLYEDEEFDQH 60

Query: 61 KRQ 64
          +RQ
Sbjct: 61 QRQ 63

[Close]

BLAST of Lcy11g016310 vs. ExPASy TrEMBL
Match: A0A6J1H6T1 (26S proteasome non-ATPase regulatory subunit 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111460138 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.1e-17
Identity = 52/63 (82.54%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSER 60
          MATLVSSAGGLLAMLNETHPLLKLHAL NLNNLVDNFWPEISTSVPVIE   E E   + 
Sbjct: 1  MATLVSSAGGLLAMLNETHPLLKLHALLNLNNLVDNFWPEISTSVPVIESLYEDEEFDQH 60

Query: 61 KRQ 64
          +RQ
Sbjct: 61 QRQ 63

[Close]

BLAST of Lcy11g016310 vs. ExPASy TrEMBL
Match: A0A5N5HL77 (26S proteasome non-ATPase regulatory subunit 1 homolog OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_033360 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.1e-17
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSER 60
          MAT+VSSAGGLLAMLNE+HPLLKLHALSNLNNLVDNFWPEISTSVPVIE   E E   + 
Sbjct: 1  MATMVSSAGGLLAMLNESHPLLKLHALSNLNNLVDNFWPEISTSVPVIESLYEDEEFDQH 60

Query: 61 KRQ 64
          +RQ
Sbjct: 61 QRQ 63

[Close]

BLAST of Lcy11g016310 vs. NCBI nr
Match: XP_023006476.1 (26S proteasome non-ATPase regulatory subunit 1 homolog A [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-17
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSER 60
          MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIE   E E   + 
Sbjct: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIESLYEDEEFDQH 60

Query: 61 KRQ 64
          +RQ
Sbjct: 61 QRQ 63

[Close]

BLAST of Lcy11g016310 vs. NCBI nr
Match: XP_023547979.1 (26S proteasome non-ATPase regulatory subunit 1 homolog A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-17
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSER 60
          MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIE   E E   + 
Sbjct: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIESLYEDEEFDQH 60

Query: 61 KRQ 64
          +RQ
Sbjct: 61 QRQ 63

[Close]

BLAST of Lcy11g016310 vs. NCBI nr
Match: XP_038874301.1 (26S proteasome non-ATPase regulatory subunit 1 homolog A [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-17
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSER 60
          MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIE   E E   + 
Sbjct: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIESLYEDEEFDQH 60

Query: 61 KRQ 64
          +RQ
Sbjct: 61 QRQ 63

[Close]

BLAST of Lcy11g016310 vs. NCBI nr
Match: KAF3457673.1 (hypothetical protein FNV43_RR02331 [Rhamnella rubrinervis])

HSP 1 Score: 98.6 bits (244), Expect = 4.3e-17
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSER 60
          MAT+VSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIE   E E   + 
Sbjct: 1  MATMVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIESLYEDEEFDQH 60

Query: 61 KRQ 64
          +RQ
Sbjct: 61 QRQ 63

[Close]

BLAST of Lcy11g016310 vs. NCBI nr
Match: KAG7013437.1 (26S proteasome non-ATPase regulatory subunit 1-like A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 7.4e-17
Identity = 52/63 (82.54%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1  MATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSER 60
          MATLVSSAGGLLAMLNETHP LKLHALSNLNNLVDNFWPEISTSVPVIE   E E   + 
Sbjct: 1  MATLVSSAGGLLAMLNETHPFLKLHALSNLNNLVDNFWPEISTSVPVIESLYEDEEFDQH 60

Query: 61 KRQ 64
          +RQ
Sbjct: 61 QRQ 63

[Close]

BLAST of Lcy11g016310 vs. TAIR 10
Match: AT2G32730.1 (26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit )

HSP 1 Score: 85.9 bits (211), Expect = 2.7e-17
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1  MAT-LVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSE 60
          MAT +VSSAGGLLAMLNE HP+LKLHALSNLNNLVD FWPEISTSVP+IE   E E    
Sbjct: 1  MATPMVSSAGGLLAMLNEPHPVLKLHALSNLNNLVDQFWPEISTSVPIIESLYEDEEFDL 60

Query: 61 RKRQ 64
           +RQ
Sbjct: 61 HQRQ 64

[Close]

BLAST of Lcy11g016310 vs. TAIR 10
Match: AT1G04810.1 (26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit )

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-15
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 2  ATLVSSAGGLLAMLNETHPLLKLHALSNLNNLVDNFWPEISTSVPVIEEEGERESGSERK 61
          A +VSSAGGLLAMLNE HP LKLHALS L  LVD FWPEISTSVP+IE   E E   + +
Sbjct: 3  AAMVSSAGGLLAMLNEPHPSLKLHALSYLIRLVDQFWPEISTSVPIIESLYEDEEFDQHQ 62

Query: 62 RQ 64
          RQ
Sbjct: 63 RQ 64

The following BLAST results are available for this feature:

BLAST of Lcy11g016310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48844	3.8e-16	75.00	26S proteasome non-ATPase regulatory subunit 1 homolog A OS=Arabidopsis thaliana...	[more]
Q9MAT0	6.1e-14	69.35	26S proteasome non-ATPase regulatory subunit 1 homolog B OS=Arabidopsis thaliana...	[more]
Q9V3P6	2.3e-05	47.37	26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster OX=722...	[more]
O74762	3.4e-04	42.37	26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe (strain 972 ...	[more]

BLAST of Lcy11g016310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KXV6	1.2e-17	84.13	26S proteasome non-ATPase regulatory subunit 1 homolog OS=Cucurbita maxima OX=36...	[more]
A0A6J1CA52	3.6e-17	82.54	26S proteasome non-ATPase regulatory subunit 1 homolog OS=Momordica charantia OX...	[more]
A0A6J1KGU3	4.7e-17	80.95	26S proteasome non-ATPase regulatory subunit 1 homolog OS=Cucurbita maxima OX=36...	[more]
A0A6J1H6T1	6.1e-17	82.54	26S proteasome non-ATPase regulatory subunit 1 homolog OS=Cucurbita moschata OX=...	[more]
A0A5N5HL77	6.1e-17	80.95	26S proteasome non-ATPase regulatory subunit 1 homolog OS=Pyrus ussuriensis x Py...	[more]

BLAST of Lcy11g016310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006476.1	2.5e-17	84.13	26S proteasome non-ATPase regulatory subunit 1 homolog A [Cucurbita maxima]	[more]
XP_023547979.1	2.5e-17	84.13	26S proteasome non-ATPase regulatory subunit 1 homolog A [Cucurbita pepo subsp. ...	[more]
XP_038874301.1	2.5e-17	84.13	26S proteasome non-ATPase regulatory subunit 1 homolog A [Benincasa hispida]	[more]
KAF3457673.1	4.3e-17	82.54	hypothetical protein FNV43_RR02331 [Rhamnella rubrinervis]	[more]
KAG7013437.1	7.4e-17	82.54	26S proteasome non-ATPase regulatory subunit 1-like A [Cucurbita argyrosperma su...	[more]

BLAST of Lcy11g016310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32730.1	2.7e-17	75.00	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit	[more]
AT1G04810.1	4.3e-15	69.35	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..134
None	No IPR available	PANTHER	PTHR10943	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT	coord: 1..60
None	No IPR available	PANTHER	PTHR10943:SF19	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 1 HOMOLOG	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g016310.1	Lcy11g016310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0042176	regulation of protein catabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0008540	proteasome regulatory particle, base subcomplex
molecular_function	GO:0030234	enzyme regulator activity