Lcy11g016300 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g016300
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	heat stress transcription factor C-1-like
Location	Chr11: 39527305 .. 39527547 (+)
RNA-Seq Expression	Lcy11g016300
Synteny	Lcy11g016300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGAGAAGGATCGAGCCCGAGCCCAGATTGGGGATAAGAAGCGGTGGTTGATGATTTCGTCTTCTTCGTCGTCGCCGTCCACCACGACGGTGACCACGTCCTTGTACGCGGAGGACATGGAGAAGAAGGGCAACCGGCGGGACTTTGGGGCGAACTTTTTGTCGCCGAAGGTGCCGGGCCGGCGGACAGTCAGGTTCAACCTTGGATTATGGAGGCGGAGGCGATGGATAGAAGTATAG

mRNA sequence

ATGCTGGAGAAGGATCGAGCCCGAGCCCAGATTGGGGATAAGAAGCGGTGGTTGATGATTTCGTCTTCTTCGTCGTCGCCGTCCACCACGACGGTGACCACGTCCTTGTACGCGGAGGACATGGAGAAGAAGGGCAACCGGCGGGACTTTGGGGCGAACTTTTTGTCGCCGAAGGTGCCGGGCCGGCGGACAGTCAGGTTCAACCTTGGATTATGGAGGCGGAGGCGATGGATAGAAGTATAG

Coding sequence (CDS)

ATGCTGGAGAAGGATCGAGCCCGAGCCCAGATTGGGGATAAGAAGCGGTGGTTGATGATTTCGTCTTCTTCGTCGTCGCCGTCCACCACGACGGTGACCACGTCCTTGTACGCGGAGGACATGGAGAAGAAGGGCAACCGGCGGGACTTTGGGGCGAACTTTTTGTCGCCGAAGGTGCCGGGCCGGCGGACAGTCAGGTTCAACCTTGGATTATGGAGGCGGAGGCGATGGATAGAAGTATAG

Protein sequence

MLEKDRARAQIGDKKRWLMISSSSSSPSTTTVTTSLYAEDMEKKGNRRDFGANFLSPKVPGRRTVRFNLGLWRRRRWIEV

Homology

[Close]

BLAST of Lcy11g016300 vs. ExPASy TrEMBL
Match: A0A6J1F4W8 (heat stress transcription factor C-1-like OS=Cucurbita moschata OX=3662 GN=LOC111440859 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-08
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   MLEKDRARAQIGDKKRWLMISSSSSSPSTTTV-TTSLYAEDMEKKGNRRDFGANFLSPKV 60
           ML+KDR  A IGDKKR LMISSSSSSPSTTTV TTSL AE++E++G+ R    NF SP+V
Sbjct: 173 MLQKDRPGAHIGDKKRRLMISSSSSSPSTTTVTTTSLEAEEIEEEGSWR---RNFSSPEV 231

Query: 61  PG 62
            G
Sbjct: 233 SG 231

[Close]

BLAST of Lcy11g016300 vs. ExPASy TrEMBL
Match: A0A6J1I819 (heat stress transcription factor C-1-like OS=Cucurbita maxima OX=3661 GN=LOC111472225 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   MLEKDRARAQIGDKKRWLMISSSSSSPSTTTV-TTSLYAEDMEKKGNRRDFGANFLSPKV 60
           ML+KDR  A IGDKKR LMISSSSSSPSTTT+ TTSL AE++E++G+ R    NF SP+V
Sbjct: 173 MLQKDRPGAHIGDKKRRLMISSSSSSPSTTTMTTTSLEAEEIEEEGSWR---PNFSSPEV 231

Query: 61  PG 62
            G
Sbjct: 233 SG 231

[Close]

BLAST of Lcy11g016300 vs. ExPASy TrEMBL
Match: A0A5D3BPQ6 (Heat stress transcription factor C-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00650 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 1   MLEKDRARAQIGDKKRWLMISSSSSSPSTTTVTTSLYAEDMEKKGNRRDFGANFLSPKVP 60
           ML KD  R Q+ +KKR LMISSSSSSPSTTT+T     E  E   N +DFG NF SP+V 
Sbjct: 59  MLHKDPTRLQLSEKKRRLMISSSSSSPSTTTLTEG--DEIEEDSNNPQDFGPNFSSPEVS 118

Query: 61  G---RRTVRFNLGL 72
           G    R    NLG+
Sbjct: 119 GPWFLREAEGNLGI 130

[Close]

BLAST of Lcy11g016300 vs. ExPASy TrEMBL
Match: A0A1S3CJ61 (heat stress transcription factor C-1-like OS=Cucumis melo OX=3656 GN=LOC103501554 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 1   MLEKDRARAQIGDKKRWLMISSSSSSPSTTTVTTSLYAEDMEKKGNRRDFGANFLSPKVP 60
           ML KD  R Q+ +KKR LMISSSSSSPSTTT+T     E  E   N +DFG NF SP+V 
Sbjct: 174 MLHKDPTRLQLSEKKRRLMISSSSSSPSTTTLTEG--DEIEEDSNNPQDFGPNFSSPEVS 233

Query: 61  G---RRTVRFNLGL 72
           G    R    NLG+
Sbjct: 234 GPWFLREAEGNLGI 245

[Close]

BLAST of Lcy11g016300 vs. ExPASy TrEMBL
Match: A0A0A0LWD5 (HSF_DOMAIN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G240590 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 35/61 (57.38%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 1   MLEKDRARAQIGDKKRWLMISSSSSSPSTTTVTTSLYAEDMEKKGNRRDFGANFLSPKVP 60
           ML KD  R Q  +KKR LMISSSSSSPSTTT+T     E  E   N++DFG N  SP+V 
Sbjct: 174 MLHKDPTRLQFAEKKRRLMISSSSSSPSTTTLTEG--DEIEEDSNNQQDFGPNLSSPEVC 232

Query: 61  G 62
           G
Sbjct: 234 G 232

[Close]

BLAST of Lcy11g016300 vs. NCBI nr
Match: XP_022933445.1 (heat stress transcription factor C-1-like [Cucurbita moschata])

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-08
Identity = 42/62 (67.74%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   MLEKDRARAQIGDKKRWLMISSSSSSPSTTTV-TTSLYAEDMEKKGNRRDFGANFLSPKV 60
           ML+KDR  A IGDKKR LMISSSSSSPSTTTV TTSL AE++E++G+ R    NF SP+V
Sbjct: 173 MLQKDRPGAHIGDKKRRLMISSSSSSPSTTTVTTTSLEAEEIEEEGSWR---RNFSSPEV 231

Query: 61  PG 62
            G
Sbjct: 233 SG 231

[Close]

BLAST of Lcy11g016300 vs. NCBI nr
Match: XP_022973632.1 (heat stress transcription factor C-1-like [Cucurbita maxima])

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-08
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   MLEKDRARAQIGDKKRWLMISSSSSSPSTTTV-TTSLYAEDMEKKGNRRDFGANFLSPKV 60
           ML+KDR  A IGDKKR LMISSSSSSPSTTT+ TTSL AE++E++G+ R    NF SP+V
Sbjct: 173 MLQKDRPGAHIGDKKRRLMISSSSSSPSTTTMTTTSLEAEEIEEEGSWR---PNFSSPEV 231

Query: 61  PG 62
            G
Sbjct: 233 SG 231

[Close]

BLAST of Lcy11g016300 vs. NCBI nr
Match: XP_023530778.1 (heat stress transcription factor C-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 1   MLEKDRARAQIGDKKRWLMISSSSSSPSTTTV-TTSLYAEDMEKKGNRRDFGANFLSPKV 60
           ML+KDR    IGDKKR LMISSSSSSPSTTTV TTSL AE++E++G+ R    NF SP+V
Sbjct: 173 MLQKDRPGPHIGDKKRRLMISSSSSSPSTTTVTTTSLEAEEIEEEGSWR---PNFSSPEV 231

Query: 61  PG 62
            G
Sbjct: 233 SG 231

[Close]

BLAST of Lcy11g016300 vs. NCBI nr
Match: XP_038879566.1 (heat stress transcription factor C-1-like [Benincasa hispida])

HSP 1 Score: 63.9 bits (154), Expect = 7.1e-07
Identity = 42/74 (56.76%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 1   MLEKDRARAQIGDKKRWLMISSSSSSPSTTTVTTSLYAEDMEKKGNRRDFGANFLSPKVP 60
           ML KD  R Q  +KKR LMISSSSSSPSTTT+T     E  E   NRRDFG NF SP+V 
Sbjct: 176 MLHKDPTRLQFPEKKRRLMISSSSSSPSTTTLTEG--DEIEEDANNRRDFGLNFSSPEVS 235

Query: 61  G---RRTVRFNLGL 72
           G    R    NLG+
Sbjct: 236 GPWFLREPEGNLGI 247

[Close]

BLAST of Lcy11g016300 vs. NCBI nr
Match: KAA0046586.1 (heat stress transcription factor C-1-like [Cucumis melo var. makuwa] >TYK00109.1 heat stress transcription factor C-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-06
Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 1   MLEKDRARAQIGDKKRWLMISSSSSSPSTTTVTTSLYAEDMEKKGNRRDFGANFLSPKVP 60
           ML KD  R Q+ +KKR LMISSSSSSPSTTT+T     E  E   N +DFG NF SP+V 
Sbjct: 59  MLHKDPTRLQLSEKKRRLMISSSSSSPSTTTLTEG--DEIEEDSNNPQDFGPNFSSPEVS 118

Query: 61  G---RRTVRFNLGL 72
           G    R    NLG+
Sbjct: 119 GPWFLREAEGNLGI 130

The following BLAST results are available for this feature:

BLAST of Lcy11g016300 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g016300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4W8	1.8e-08	67.74	heat stress transcription factor C-1-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1I819	4.1e-08	66.13	heat stress transcription factor C-1-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A5D3BPQ6	1.0e-06	54.05	Heat stress transcription factor C-1-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3CJ61	1.0e-06	54.05	heat stress transcription factor C-1-like OS=Cucumis melo OX=3656 GN=LOC10350155...	[more]
A0A0A0LWD5	1.4e-05	57.38	HSF_DOMAIN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G240590 ...	[more]

BLAST of Lcy11g016300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933445.1	3.8e-08	67.74	heat stress transcription factor C-1-like [Cucurbita moschata]	[more]
XP_022973632.1	8.4e-08	66.13	heat stress transcription factor C-1-like [Cucurbita maxima]	[more]
XP_023530778.1	1.4e-07	66.13	heat stress transcription factor C-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038879566.1	7.1e-07	56.76	heat stress transcription factor C-1-like [Benincasa hispida]	[more]
KAA0046586.1	2.1e-06	54.05	heat stress transcription factor C-1-like [Cucumis melo var. makuwa] >TYK00109.1...	[more]

BLAST of Lcy11g016300 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g016300.1	Lcy11g016300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0043565	sequence-specific DNA binding