Lcy11g016210 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g016210
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Proliferating cell nuclear antigen
Location	Chr11: 39097058 .. 39097255 (-)
RNA-Seq Expression	Lcy11g016210
Synteny	Lcy11g016210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCATGTCGCTTTGGTCTCTTCCTTCTCCGCTCTGAGGGTTTTGAGCACTACCGCTGCGACCGCAACATCTCCATGGGTATGAACCTCAACAACATGGCTAAGATGCTCCGCTGTGCTGGCAACGATGACATTGTTATGCTGAAGGCCGAAGATAGTAGCGATTGCGTCACATTAATGTTCGAAAACCCTTGTGAGTAA

mRNA sequence

TCATGTCGCTTTGGTCTCTTCCTTCTCCGCTCTGAGGGTTTTGAGCACTACCGCTGCGACCGCAACATCTCCATGGGTATGAACCTCAACAACATGGCTAAGATGCTCCGCTGTGCTGGCAACGATGACATTGTTATGCTGAAGGCCGAAGATAGTAGCGATTGCGTCACATTAATGTTCGAAAACCCTTGTGAGTAA

Coding sequence (CDS)

TCATGTCGCTTTGGTCTCTTCCTTCTCCGCTCTGAGGGTTTTGAGCACTACCGCTGCGACCGCAACATCTCCATGGGTATGAACCTCAACAACATGGCTAAGATGCTCCGCTGTGCTGGCAACGATGACATTGTTATGCTGAAGGCCGAAGATAGTAGCGATTGCGTCACATTAATGTTCGAAAACCCTTGTGAGTAA

Protein sequence

SCRFGLFLLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE

Homology

[Close]

BLAST of Lcy11g016210 vs. ExPASy Swiss-Prot
Match: P17070 (Proliferating cell nuclear antigen OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0805200 PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 3.0e-22
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENP 64
           LLRSEGFEHYRCDRN+SMGMNLNNMAKMLRCAGNDDI+ +KA+D SD VT MFE+P
Sbjct: 51  LLRSEGFEHYRCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESP 106

[Close]

BLAST of Lcy11g016210 vs. ExPASy Swiss-Prot
Match: P22177 (Proliferating cell nuclear antigen (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.0e-22
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 8  LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
          LLRSEGFEHYRCDRNISMGMNLNNMAKML+CAGNDDI+ +KA+D SD VT MFE+P +
Sbjct: 21 LLRSEGFEHYRCDRNISMGMNLNNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQ 78

[Close]

BLAST of Lcy11g016210 vs. ExPASy Swiss-Prot
Match: O82134 (Proliferating cell nuclear antigen OS=Pisum sativum OX=3888 GN=PCNA PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.0e-22
Identity = 46/58 (79.31%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
           LLRSEGFEHYRCDRN+SMGMNLNNMAKML+CAGNDDI+ +KA+D SD VT MFE+P +
Sbjct: 51  LLRSEGFEHYRCDRNLSMGMNLNNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQ 108

[Close]

BLAST of Lcy11g016210 vs. ExPASy Swiss-Prot
Match: Q43266 (Proliferating cell nuclear antigen OS=Zea mays OX=4577 GN=PCNA PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.6e-22
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENP 64
           LLR+EGFEHYRCDRN+SMGMNLNNMAKMLRCAGNDDI+ +KA+D SD VT MFE+P
Sbjct: 51  LLRAEGFEHYRCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESP 106

[Close]

BLAST of Lcy11g016210 vs. ExPASy Swiss-Prot
Match: P24314 (Proliferating cell nuclear antigen OS=Catharanthus roseus OX=4058 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-21
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
           LLRSEGFEHYRCDRN SMGMNLNNMAKML+CAGNDDI+ LKA+D SD VT MFE+P +
Sbjct: 51  LLRSEGFEHYRCDRNPSMGMNLNNMAKMLKCAGNDDIITLKADDGSDTVTFMFESPTQ 108

[Close]

BLAST of Lcy11g016210 vs. ExPASy TrEMBL
Match: A0A6J1K7Q7 (Proliferating cell nuclear antigen OS=Cucurbita maxima OX=3661 GN=LOC111491393 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.8e-22
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
           LLRSEGFEHYRCDRN+SMGMNLNNMAKMLRCAGNDDIV LKA+D SDC+T MFENP +
Sbjct: 74  LLRSEGFEHYRCDRNVSMGMNLNNMAKMLRCAGNDDIVTLKADDGSDCITFMFENPSQ 131

[Close]

BLAST of Lcy11g016210 vs. ExPASy TrEMBL
Match: A0A6J1FVS4 (Proliferating cell nuclear antigen OS=Cucurbita moschata OX=3662 GN=LOC111447316 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.8e-22
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
           LLRSEGFEHYRCDRN+SMGMNLNNMAKMLRCAGNDDIV LKA+D SDC+T MFENP +
Sbjct: 51  LLRSEGFEHYRCDRNVSMGMNLNNMAKMLRCAGNDDIVTLKADDGSDCITFMFENPSQ 108

[Close]

BLAST of Lcy11g016210 vs. ExPASy TrEMBL
Match: A0A6J1DUY3 (Proliferating cell nuclear antigen OS=Momordica charantia OX=3673 GN=LOC111023729 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
           LLRS+GFEHYRCDRNIS+GMNL NMAKMLRCAGNDDIV LKA+D SDC+T MFENP +
Sbjct: 51  LLRSDGFEHYRCDRNISIGMNLGNMAKMLRCAGNDDIVTLKADDGSDCITFMFENPSQ 108

[Close]

BLAST of Lcy11g016210 vs. ExPASy TrEMBL
Match: A0A199VS92 (Proliferating cell nuclear antigen OS=Ananas comosus OX=4615 GN=LOC109723678 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.4e-20
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENP 64
           LLRSEGFEHYRCDRN+SMGMNLNNMAKMLRCAGNDDI+ LKA+D SD VT MFE+P
Sbjct: 51  LLRSEGFEHYRCDRNLSMGMNLNNMAKMLRCAGNDDIITLKADDGSDTVTFMFESP 106

[Close]

BLAST of Lcy11g016210 vs. ExPASy TrEMBL
Match: A0A6V7QT21 (Proliferating cell nuclear antigen OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS29603 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.4e-20
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENP 64
           LLRSEGFEHYRCDRN+SMGMNLNNMAKMLRCAGNDDI+ LKA+D SD VT MFE+P
Sbjct: 51  LLRSEGFEHYRCDRNLSMGMNLNNMAKMLRCAGNDDIITLKADDGSDTVTFMFESP 106

[Close]

BLAST of Lcy11g016210 vs. NCBI nr
Match: XP_022942180.1 (proliferating cell nuclear antigen-like [Cucurbita moschata])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
           LLRSEGFEHYRCDRN+SMGMNLNNMAKMLRCAGNDDIV LKA+D SDC+T MFENP +
Sbjct: 51  LLRSEGFEHYRCDRNVSMGMNLNNMAKMLRCAGNDDIVTLKADDGSDCITFMFENPSQ 108

[Close]

BLAST of Lcy11g016210 vs. NCBI nr
Match: XP_022996079.1 (proliferating cell nuclear antigen-like [Cucurbita maxima])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
           LLRSEGFEHYRCDRN+SMGMNLNNMAKMLRCAGNDDIV LKA+D SDC+T MFENP +
Sbjct: 74  LLRSEGFEHYRCDRNVSMGMNLNNMAKMLRCAGNDDIVTLKADDGSDCITFMFENPSQ 131

[Close]

BLAST of Lcy11g016210 vs. NCBI nr
Match: KAG6600018.1 (Proliferating cell nuclear antigen, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
           LLRSEGFEHYRCDRN+SMGMNLNNMAKMLRCAGNDDIV LKA+D SDC+T MFENP +
Sbjct: 51  LLRSEGFEHYRCDRNVSMGMNLNNMAKMLRCAGNDDIVTLKADDGSDCITFMFENPSQ 108

[Close]

BLAST of Lcy11g016210 vs. NCBI nr
Match: XP_023549127.1 (proliferating cell nuclear antigen-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
           LLRSEGFEHYRCDRN+SMGMNLNNMAKMLRCAGNDDIV LKA+D SDC+T MFENP +
Sbjct: 51  LLRSEGFEHYRCDRNVSMGMNLNNMAKMLRCAGNDDIVTLKADDGSDCITFMFENPSQ 108

[Close]

BLAST of Lcy11g016210 vs. NCBI nr
Match: XP_038891866.1 (proliferating cell nuclear antigen-like [Benincasa hispida])

HSP 1 Score: 111.3 bits (277), Expect = 3.1e-21
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
           LLRSEGFEHYRCDR+ISMGMNLNNMAKMLRCAGNDDIV LKA+D SDCVT MFENP +
Sbjct: 51  LLRSEGFEHYRCDRSISMGMNLNNMAKMLRCAGNDDIVTLKADDGSDCVTFMFENPSQ 108

[Close]

BLAST of Lcy11g016210 vs. TAIR 10
Match: AT2G29570.1 (proliferating cell nuclear antigen 2 )

HSP 1 Score: 100.9 bits (250), Expect = 4.0e-22
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
           LLRSEGFEHYRCDRN+SMGMNL NM+KML+CAGNDDI+ +KA+D SD VT MFE+P +
Sbjct: 51  LLRSEGFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQ 108

[Close]

BLAST of Lcy11g016210 vs. TAIR 10
Match: AT1G07370.1 (proliferating cellular nuclear antigen 1 )

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-21
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 8   LLRSEGFEHYRCDRNISMGMNLNNMAKMLRCAGNDDIVMLKAEDSSDCVTLMFENPCE 66
           LLRSEGFEHYRCDRN+SMGMNL NM+KML+CAGNDDI+ +KA+D  D VT MFE+P +
Sbjct: 51  LLRSEGFEHYRCDRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQ 108

The following BLAST results are available for this feature:

BLAST of Lcy11g016210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P17070	3.0e-22	83.93	Proliferating cell nuclear antigen OS=Oryza sativa subsp. japonica OX=39947 GN=O...	[more]
P22177	3.0e-22	81.03	Proliferating cell nuclear antigen (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
O82134	5.0e-22	79.31	Proliferating cell nuclear antigen OS=Pisum sativum OX=3888 GN=PCNA PE=2 SV=1	[more]
Q43266	6.6e-22	82.14	Proliferating cell nuclear antigen OS=Zea mays OX=4577 GN=PCNA PE=2 SV=1	[more]
P24314	1.1e-21	81.03	Proliferating cell nuclear antigen OS=Catharanthus roseus OX=4058 PE=2 SV=1	[more]

BLAST of Lcy11g016210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7Q7	6.8e-22	86.21	Proliferating cell nuclear antigen OS=Cucurbita maxima OX=3661 GN=LOC111491393 P...	[more]
A0A6J1FVS4	6.8e-22	86.21	Proliferating cell nuclear antigen OS=Cucurbita moschata OX=3662 GN=LOC111447316...	[more]
A0A6J1DUY3	1.7e-20	82.76	Proliferating cell nuclear antigen OS=Momordica charantia OX=3673 GN=LOC11102372...	[more]
A0A199VS92	6.4e-20	85.71	Proliferating cell nuclear antigen OS=Ananas comosus OX=4615 GN=LOC109723678 PE=...	[more]
A0A6V7QT21	6.4e-20	85.71	Proliferating cell nuclear antigen OS=Ananas comosus var. bracteatus OX=296719 G...	[more]

BLAST of Lcy11g016210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942180.1	1.4e-21	86.21	proliferating cell nuclear antigen-like [Cucurbita moschata]	[more]
XP_022996079.1	1.4e-21	86.21	proliferating cell nuclear antigen-like [Cucurbita maxima]	[more]
KAG6600018.1	1.4e-21	86.21	Proliferating cell nuclear antigen, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023549127.1	1.4e-21	86.21	proliferating cell nuclear antigen-like [Cucurbita pepo subsp. pepo]	[more]
XP_038891866.1	3.1e-21	87.93	proliferating cell nuclear antigen-like [Benincasa hispida]	[more]

BLAST of Lcy11g016210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29570.1	4.0e-22	75.86	proliferating cell nuclear antigen 2	[more]
AT1G07370.1	1.2e-21	74.14	proliferating cellular nuclear antigen 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022648	Proliferating cell nuclear antigen, PCNA, N-terminal	PFAM	PF00705	PCNA_N	coord: 8..63 e-value: 1.2E-24 score: 86.4
None	No IPR available	GENE3D	3.10.150.10	DNA Polymerase III, subunit A, domain 2	coord: 4..65 e-value: 3.1E-22 score: 80.8
None	No IPR available	PANTHER	PTHR11352	PROLIFERATING CELL NUCLEAR ANTIGEN	coord: 7..63
None	No IPR available	PANTHER	PTHR11352:SF8	PROLIFERATING CELL NUCLEAR ANTIGEN	coord: 7..63
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 7..63
IPR022659	Proliferating cell nuclear antigen, PCNA, conserved site	PROSITE	PS00293	PCNA_2	coord: 18..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g016210.1	Lcy11g016210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0006275	regulation of DNA replication
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030337	DNA polymerase processivity factor activity