Lcy11g016130 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g016130
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	zf-RVT domain-containing protein
Location	Chr11: 38887894 .. 38890745 (+)
RNA-Seq Expression	Lcy11g016130
Synteny	Lcy11g016130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAAGGAGAATGGTCAATGGAATGAGGTTTTGATTAGGGAGTCCCTTTTGCCTTGTGATGCGGTAGATATCCTCAATATCCCCCTCAGTAGGGCAAATTTGGAGGACGAAATCATTTGGGCCATTAACAACAAAGGCAAATTTTCGGAGAAGTCGGCTTATCATTTAGCAGTGGCTCTCGAAGATAGCAAAGAGAGCTCCGCCTCGGGATGTGACTATTCTAAGAGCTTCTGAAAGTCGATTTGGAGCCTCAAAATCGCTCCAAGAGGCAAAATCTGCCTTTGGAAAAAGTTCTCAATCGCAATAGTTCTGACCTCTCCGAAGTGCAGGACGTTGTGCCTGTTATCTAGAACCTCGCAAATTCACTGTCTAATATCTCTTTCGTGTGGCGCCCTAGATCGGGTAATTTGGTTGCGCATTCTCTAGCGCGTAGGGCCTCCCGGCTGCCGTCGTCTCGACCTCAGGGGGGATGTTTTTTGTATCTCTGATTTTTCTGTTTATTCTTTTGTGGCTGTTGAAGATCCTCAGTCCGTTCAACGAGATTCCCATTATTGTTCTGTTTTTGTGGGGGATTCGAATTTCCCCTTATGGCTTGCCTCTATTCTGTATGAGGATTATCGTGATGTTGGTTAGTTTCTGCTGAATGAAGTTTTATTTTCTCAAAAAAAAAAGAAATACGCTAAAGTTTTTATTTACCTTGTACCATGGAAAGAATATTAAAAATTTTATATAAATCTTTTATGAAACAAACACCTTTAACAATAAATACAATGTAAGTGTAACACAACATAAAGAAATAAAAGATAACTAGAAAACTGTAGCAAAAACAAAAGAATAAGAGAAATAACACGAGATTTAAAGTGATTTAGCAATATAGCTATCAGAAGCATTCAAGATTTCATTCTTTCACAAACCTTCAATGGTAAACCTCATTACGCCATATACAAAAGCTCTCTTTTCTACAGGTTCTTAATGGTAAACCATATTCCTCCTTGTACTCAAGCTTTCGAAATCTTCTTTCTCCTTCTCCCTCTCTCACCCTTGTTTCCCCTACGATTTTCTCGGGAATTATCTCCGCTTCTACTCTAGTGATTCACACCCTTTCTCACTCCTATGATTTTCTTTTAACTGTCCCAATTACATGTACATACTTCATAGATAAAATGCAAAATTAATTTACAAAACTGTAGTAGCTTTTGCAAAATTTCACACCACGTCAAAGTAGTATTTTTAACAAAAATAAATAAATAAAATAAAATAAAAATGTTGTACCCTCAAATTTGTGGTATATTATATTTTATATTTGCCCATTGCCTCAATACTAATCTCCCCCTTTTCATATAAAACCAATTTTATATTCCCTCTTTTTTTTTTTTTTTTTTTTTTTGAAGAAAATTTTATATTCCCTCTTGGACTGGCTTTCTTCTGGTCTAGTCACCTTCACTTCCTCTATAAGTAAAAGAAAATTAGTTTCTTTGATTGGAGAAAGACTGTTGTCTAGTCAGAAATCATAAACATAAGATATATCTCATAATTGAATTCTAAATCATTATGTAAAATCTATCTAATATAATATAACATAATATAATATATAATCCATCATGTGAAATCATTCACTTTATTAATGTTAATGTTGGATTGTAGGTACATACAAAAATCTTGCCACATCTCCAAGAAGGTTTTAATAAAAAAAAATTAAATAATTAGCTTTACCCAAATGTCACGTTCTTATGAGTATGACTCTTATTTTAACATAATTTATGTTTTAGAAAATACTTAAAATTATTCTGCCTGTTGTTCTTTGATATTTATTCCTTAATTTTTCTTAAAATTACCTCTATTCACTGCACTTTTGCTCAAGCTTAGAGTTCAATCTTGAAATAGGTTAGATTTAACCTTGGTACTTATAGATTGTGCTTAGTTCAATTTAGACTTTATAATTTTTAAAGTTTTATTTTATTTTATTAGCGAGATCAACAACATTTCGGATTTGGATTTGAATCTCAACTCTCTTGGTCAAGAATACATGTCAATTATCGTTGAACTATGTTTACTTTGATATTTTAAAAGTTTTAATTATTGATCCTCGTATAATTTAGTAAAATATCTTAAATTGTTTCTAGCATCACTAACCAGGTTAACAGTTTTCTTACCTAGCGTCAATGCATGAAACATATTTCTTTCAATATGTTTTAGAGAGTCGACCAACTATCACTAATAGAAAATGCACCCCAGAAAAAAAAATCCACATTTAATTCATTAAAAAATGTTTTAAAAGATCTTAAAAGACTATTGATGGTCAAATTCGACCAAGCATCTCGCCTGACTTTCACGTGACACCAGCAGTGAATTTGTAGAAGAGGAGAAGACATGACCTGCAAGATGAGCAAACGCTGCACACCGGTGTGATGTTTGCCACACACACTCCAATGCTTAAGTCAGACCACCAAAGCAAGATGAGCTAGATAAATCAAAGGAGAAGAAATATAGGTCCCCTGTCCAATTCTTCTCTCAGGGTATTTATAATTGTCTTTAGGGTTTTTTCCTCACCTGCATCAATTGACGGAGGATCTTGCTTGACTGAGGGAGGTCCCTTGGAGTCTAAAGAAACATGCTCGGGCCACCCGCAATGTGGCCCCGCCACTTTATTTGTCGGCCTCAGCATTGGGCTGAGGCTAACCATGGCCTCGTCTTCTGCAATGGGCCGAAGTCGAGGAGACTTGCTGGCAGGCTGTGAGCCTGCCTTCTTCCTTTTCCTACCATGGTTTGACCCCTCCGAGTCTTTGGTGCAAACGGACGAGGATCAATTTATCCATAACAAAGACCATAGAGTTCATTTTACCACTTAA

mRNA sequence

ATGATCAAGGAGAATGGTCAATGGAATGAGGTTTTGATTAGGGAGTCCCTTTTGCCTTGTGATGCGGTAGATATCCTCAATATCCCCCTCAGTAGGGCAAATTTGGAGGACGAAATCATTTGGGCCATTAACAACAAAGGCAAATTTTCGGAGAAGTCGGCTTATCATTTAGCAGTGGCTCTCGAAGATAGCAAAGAGAGCTCCGCCTCGGGATATCCTCAGTCCGTTCAACGAGATTCCCATTATTGTTCTGTTTTTGTGGGGGATTCGAATTTCCCCTTATGGCTTGCCTCTATTCTGTATGAGGATTATCGTGATGTTGGTCCCCTGTCCAATTCTTCTCTCAGGGTATTTATAATTGTCTTTAGGGTTTTTTCCTCACCTGCATCAATTGACGGAGGATCTTGCTTGACTGAGGGAGGTCCCTTGGAGTCTAAAGAAACATGCTCGGGCCACCCGCAATGTGGCCCCGCCACTTTATTTGTCGGCCTCAGCATTGGGCTGAGGCTAACCATGGCCTCGTCTTCTGCAATGGGCCGAAGTCGAGGAGACTTGCTGGCAGGCTGTGAGCCTGCCTTCTTCCTTTTCCTACCATGGTTTGACCCCTCCGAGTCTTTGGTGCAAACGGACGAGGATCAATTTATCCATAACAAAGACCATAGAGTTCATTTTACCACTTAA

Coding sequence (CDS)

ATGATCAAGGAGAATGGTCAATGGAATGAGGTTTTGATTAGGGAGTCCCTTTTGCCTTGTGATGCGGTAGATATCCTCAATATCCCCCTCAGTAGGGCAAATTTGGAGGACGAAATCATTTGGGCCATTAACAACAAAGGCAAATTTTCGGAGAAGTCGGCTTATCATTTAGCAGTGGCTCTCGAAGATAGCAAAGAGAGCTCCGCCTCGGGATATCCTCAGTCCGTTCAACGAGATTCCCATTATTGTTCTGTTTTTGTGGGGGATTCGAATTTCCCCTTATGGCTTGCCTCTATTCTGTATGAGGATTATCGTGATGTTGGTCCCCTGTCCAATTCTTCTCTCAGGGTATTTATAATTGTCTTTAGGGTTTTTTCCTCACCTGCATCAATTGACGGAGGATCTTGCTTGACTGAGGGAGGTCCCTTGGAGTCTAAAGAAACATGCTCGGGCCACCCGCAATGTGGCCCCGCCACTTTATTTGTCGGCCTCAGCATTGGGCTGAGGCTAACCATGGCCTCGTCTTCTGCAATGGGCCGAAGTCGAGGAGACTTGCTGGCAGGCTGTGAGCCTGCCTTCTTCCTTTTCCTACCATGGTTTGACCCCTCCGAGTCTTTGGTGCAAACGGACGAGGATCAATTTATCCATAACAAAGACCATAGAGTTCATTTTACCACTTAA

Protein sequence

MIKENGQWNEVLIRESLLPCDAVDILNIPLSRANLEDEIIWAINNKGKFSEKSAYHLAVALEDSKESSASGYPQSVQRDSHYCSVFVGDSNFPLWLASILYEDYRDVGPLSNSSLRVFIIVFRVFSSPASIDGGSCLTEGGPLESKETCSGHPQCGPATLFVGLSIGLRLTMASSSAMGRSRGDLLAGCEPAFFLFLPWFDPSESLVQTDEDQFIHNKDHRVHFTT

Homology

[Close]

BLAST of Lcy11g016130 vs. ExPASy TrEMBL
Match: A0A6J1D5Y4 (uncharacterized protein LOC111017927 OS=Momordica charantia OX=3673 GN=LOC111017927 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.7e-07
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 1  MIKENGQWNEVLIRESLLPCDAVDILNIPLSRANLEDEIIWAINNKGKFSEKSAYHLAVA 60
          ++ +  +WNE LIR S L  +A  ILNIPLS  N  DE+IW  + K KFS KS Y L V 
Sbjct: 19 LVMKRWRWNESLIRNSFLEEEADIILNIPLSTCNQHDEVIWGPDKKDKFSVKSTYRLGVH 78

Query: 61 LEDSKESSASGYPQSVQR 79
          L  + E   S   +  ++
Sbjct: 79 LASADEVQTSNSEEEAKK 96

[Close]

BLAST of Lcy11g016130 vs. ExPASy TrEMBL
Match: A0A5C7HSJ5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014543 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06
Identity = 33/71 (46.48%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 5  NGQWNEVLIRESLLPCDAVDILNIPLSRANLEDEIIWAINNKGKFSEKSAYHLAVALEDS 64
          +G WN+ LIR S LP DA  IL IP S +N +D ++W     G FS KSA HL  +L  S
Sbjct: 23 SGLWNDNLIRRSFLPNDADSILRIPCSSSNRKDSLVWHFKKMGSFSVKSACHLGCSLAVS 82

Query: 65 KESSASGYPQS 76
            +S SG   S
Sbjct: 83 PLASGSGLDSS 93

[Close]

BLAST of Lcy11g016130 vs. ExPASy TrEMBL
Match: A0A803QH07 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.8e-06
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1    MIKENGQWNEVLIRESLLPCDAVDILNIPLSRANLEDEIIWAINNKGKFSEKSAYHLAVA 60
            +I +N +WN  L+ +   P D   IL+IPLS    +D +IW  +  G ++ KS +HLA  
Sbjct: 1434 LINDNREWNSTLLNDFFQPIDVEKILSIPLSYFATQDRLIWHHSTSGSYNVKSGFHLATH 1493

Query: 61   LEDSKESSAS 71
            LED  +SS+S
Sbjct: 1494 LEDQLQSSSS 1503

[Close]

BLAST of Lcy11g016130 vs. ExPASy TrEMBL
Match: A0A2I4FP01 (uncharacterized protein LOC109000828 OS=Juglans regia OX=51240 GN=LOC109000828 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 37/100 (37.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 1   MIKENGQWNEVLIRESLLPCDAVDILNIPLSRANLEDEIIWAINNKGKFSEKSAYHLAVA 60
           M++   +WNEVLIR   L  +   I  IPLSR ++ED++IW  + KG FS KSAY L   
Sbjct: 584 MVENKKEWNEVLIRTIFLKDEVDQICCIPLSRRDVEDKLIWGRSKKGLFSVKSAYFLEQE 643

Query: 61  LEDSKESSASGYPQSVQRDSHYCSV-FVGDSNFPLWLASI 100
                +  +SG   S  R     ++ F G     +W A+I
Sbjct: 644 RSKVVKGESSGGATSDSRWKFLWTLNFPGKLKMFMWKAAI 683

[Close]

BLAST of Lcy11g016130 vs. ExPASy TrEMBL
Match: Q8S5K1 (Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.23 PE=4 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-05
Identity = 40/112 (35.71%), Postives = 53/112 (47.32%), Query Frame = 0


Query: 1    MIKENGQWNEVLIRESLLPCDAVDILNIPLSRANLEDEIIWAINNKGKFSEKSAYHLAVA 60
            +I ++G W+   I +  LP DA  ILNI LS    +D I W  +  G+FS +SAYHLAVA
Sbjct: 1533 LIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAYHLAVA 1592

Query: 61   LEDSKESSASGYPQSVQRDSHYCSVFVGDSNFPLWLASILYEDYRDVGPLSN 113
            L    E S+S                 G+ N   W A       + + PLSN
Sbjct: 1593 LAHVDEGSSSS----------------GNGNSRAWNALWKCNAPQKLNPLSN 1628

[Close]

BLAST of Lcy11g016130 vs. NCBI nr
Match: XP_030922977.1 (uncharacterized protein LOC115949847 [Quercus lobata])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-07
Identity = 38/92 (41.30%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 4  ENGQWNEVLIRESLLPCDAVDILNIPLSRANLEDEIIWAINNKGKFSEKSAYHLAVALED 63
          EN +WN  LIR   LP +A  ILNIPLS    ED++IW  N KG+F+ +SAY++A+ + +
Sbjct: 9  ENRRWNAELIRSLFLPFEANTILNIPLSYNLPEDKVIWIGNRKGEFTVRSAYYIALKVIE 68

Query: 64 SKESSASGYPQSVQRDSHYCSVFVGDSNFPLW 96
          S E   S Y               GD   PLW
Sbjct: 69 SDEVGESSY---------------GDFRTPLW 85

[Close]

BLAST of Lcy11g016130 vs. NCBI nr
Match: XP_022149515.1 (uncharacterized protein LOC111017927 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-06
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 1  MIKENGQWNEVLIRESLLPCDAVDILNIPLSRANLEDEIIWAINNKGKFSEKSAYHLAVA 60
          ++ +  +WNE LIR S L  +A  ILNIPLS  N  DE+IW  + K KFS KS Y L V 
Sbjct: 19 LVMKRWRWNESLIRNSFLEEEADIILNIPLSTCNQHDEVIWGPDKKDKFSVKSTYRLGVH 78

Query: 61 LEDSKESSASGYPQSVQR 79
          L  + E   S   +  ++
Sbjct: 79 LASADEVQTSNSEEEAKK 96

[Close]

BLAST of Lcy11g016130 vs. NCBI nr
Match: XP_023881891.1 (uncharacterized protein LOC111994244 [Quercus suber])

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-06
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 3   KENGQWNEVLIRESLLPCDAVDILNIPLSRANLEDEIIWAINNKGKFSEKSAYHLAVALE 62
           +E  +W + ++R+  LP +A  IL+IPLS    ED+IIW  N KG+FS KSAY++AV + 
Sbjct: 807 RERKRWKDDVVRDLFLPFEARTILSIPLSHNFPEDQIIWVGNRKGEFSVKSAYYIAVGVI 866

Query: 63  DSKE--SSASGYPQSV 77
           D+ E   S+SG  +S+
Sbjct: 867 DNLEVGESSSGDSRSL 882

[Close]

BLAST of Lcy11g016130 vs. NCBI nr
Match: TXG59970.1 (hypothetical protein EZV62_014543 [Acer yangbiense])

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-06
Identity = 33/71 (46.48%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 5  NGQWNEVLIRESLLPCDAVDILNIPLSRANLEDEIIWAINNKGKFSEKSAYHLAVALEDS 64
          +G WN+ LIR S LP DA  IL IP S +N +D ++W     G FS KSA HL  +L  S
Sbjct: 23 SGLWNDNLIRRSFLPNDADSILRIPCSSSNRKDSLVWHFKKMGSFSVKSACHLGCSLAVS 82

Query: 65 KESSASGYPQS 76
            +S SG   S
Sbjct: 83 PLASGSGLDSS 93

[Close]

BLAST of Lcy11g016130 vs. NCBI nr
Match: XP_023902041.1 (uncharacterized protein LOC112013897 [Quercus suber])

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-06
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 3   KENGQWNEVLIRESLLPCDAVDILNIPLSRANLEDEIIWAINNKGKFSEKSAYHLAVALE 62
           +E  +W + ++R   LP +A  IL+IPLS    ED+IIW  N KG+FS KSAY++AV + 
Sbjct: 553 RERKRWRDDVVRALFLPFEARTILSIPLSHNFPEDQIIWVGNRKGEFSVKSAYYIAVGVI 612

Query: 63  DSKE--SSASGYPQSV 77
           D+ E   S+SG  +S+
Sbjct: 613 DNMEVGESSSGDSRSL 628

The following BLAST results are available for this feature:

BLAST of Lcy11g016130 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g016130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5Y4	9.7e-07	42.31	uncharacterized protein LOC111017927 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5C7HSJ5	1.7e-06	46.48	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014543 PE=4 SV=1	[more]
A0A803QH07	4.8e-06	40.00	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2I4FP01	1.4e-05	37.00	uncharacterized protein LOC109000828 OS=Juglans regia OX=51240 GN=LOC109000828 P...	[more]
Q8S5K1	1.8e-05	35.71	Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24....	[more]

BLAST of Lcy11g016130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030922977.1	2.4e-07	41.30	uncharacterized protein LOC115949847 [Quercus lobata]	[more]
XP_022149515.1	2.0e-06	42.31	uncharacterized protein LOC111017927 [Momordica charantia]	[more]
XP_023881891.1	2.0e-06	44.74	uncharacterized protein LOC111994244 [Quercus suber]	[more]
TXG59970.1	3.4e-06	46.48	hypothetical protein EZV62_014543 [Acer yangbiense]	[more]
XP_023902041.1	3.4e-06	44.74	uncharacterized protein LOC112013897 [Quercus suber]	[more]

BLAST of Lcy11g016130 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g016130.1	Lcy11g016130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity