Lcy11g015980 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g015980
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 38530633 .. 38531497 (+)
RNA-Seq Expression	Lcy11g015980
Synteny	Lcy11g015980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTACCCATTTCTCCCTTCCCAAAGAAAAGAAAAGAAAACACAAACACAACATTTTAGCCTGACTCTCACACTCAGGGAATCTCTGCACACAGACAGAGAGAGAAACAAAAAGAAAGCAAAGAGAGAAAGAAAGAATTCCGTTCCATTCCTTCCATTTGAGCCCATCTATTTTGATTTTTGAACGAACAAAAAAATCCACTTCATCATCTTCAATCTTCATCCATGGAGATCCCCAGCAAAGTGGTCAAGTTCAGGTTCCACATTCTGGCAGCCCTAACTCTATGCCTTACTCTCTTCTCCCTCATCCTCCTCGCCCCAAGGCTCCTCTCCCTCATCGCCTACTTCTGGCCTCTCCTCCTCTCCACCGCCCTCTTCCTCCTCGCCGTCCTCCTCTTCGCCAACACCTCCCTCCCCCCGCCGGATAAAGCCGCCGAAGGCCTCCTCAACTACGTCGCCGGCCACCCCGACCACCACCACCACCTCGACGCCTCACTCAAGTCCGATTAGACCACGGTTCCTTCTTCTCTACTTTTCTCTGACTTTTACTCTTTTACTACTCCTTTACTCTGTACTCAAATCTCATCTCTCCCATCCATTATTTCTCTAATTTCTGTACTCAATAACGCTTATCTAATGAAATCCCCCTTTTTCGACGCCGATCTGATGTGATGATTCGTCAGGATGCCTCTGGTTTCTACTTCTTTTTGTTTTTCTCTTGCGATCGATTACTGTTTAGATCCAATCGCTACGTGCCTTTTTTTTTTTATCCTTTTTGTTTCTTGTGAATTTCTGTTGTTGATCCGATGAGTTTGAGCTTGGATGTGAAATGAGTAAAAGCGGAGTGTTGAATCGAATGGGAGAG

mRNA sequence

GAATTACCCATTTCTCCCTTCCCAAAGAAAAGAAAAGAAAACACAAACACAACATTTTAGCCTGACTCTCACACTCAGGGAATCTCTGCACACAGACAGAGAGAGAAACAAAAAGAAAGCAAAGAGAGAAAGAAAGAATTCCGTTCCATTCCTTCCATTTGAGCCCATCTATTTTGATTTTTGAACGAACAAAAAAATCCACTTCATCATCTTCAATCTTCATCCATGGAGATCCCCAGCAAAGTGGTCAAGTTCAGGTTCCACATTCTGGCAGCCCTAACTCTATGCCTTACTCTCTTCTCCCTCATCCTCCTCGCCCCAAGGCTCCTCTCCCTCATCGCCTACTTCTGGCCTCTCCTCCTCTCCACCGCCCTCTTCCTCCTCGCCGTCCTCCTCTTCGCCAACACCTCCCTCCCCCCGCCGGATAAAGCCGCCGAAGGCCTCCTCAACTACGTCGCCGGCCACCCCGACCACCACCACCACCTCGACGCCTCACTCAAGTCCGATTAGACCACGGTTCCTTCTTCTCTACTTTTCTCTGACTTTTACTCTTTTACTACTCCTTTACTCTGTACTCAAATCTCATCTCTCCCATCCATTATTTCTCTAATTTCTGTACTCAATAACGCTTATCTAATGAAATCCCCCTTTTTCGACGCCGATCTGATGTGATGATTCGTCAGGATGCCTCTGGTTTCTACTTCTTTTTGTTTTTCTCTTGCGATCGATTACTGTTTAGATCCAATCGCTACGTGCCTTTTTTTTTTTATCCTTTTTGTTTCTTGTGAATTTCTGTTGTTGATCCGATGAGTTTGAGCTTGGATGTGAAATGAGTAAAAGCGGAGTGTTGAATCGAATGGGAGAG

Coding sequence (CDS)

ATGGAGATCCCCAGCAAAGTGGTCAAGTTCAGGTTCCACATTCTGGCAGCCCTAACTCTATGCCTTACTCTCTTCTCCCTCATCCTCCTCGCCCCAAGGCTCCTCTCCCTCATCGCCTACTTCTGGCCTCTCCTCCTCTCCACCGCCCTCTTCCTCCTCGCCGTCCTCCTCTTCGCCAACACCTCCCTCCCCCCGCCGGATAAAGCCGCCGAAGGCCTCCTCAACTACGTCGCCGGCCACCCCGACCACCACCACCACCTCGACGCCTCACTCAAGTCCGATTAG

Protein sequence

MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFANTSLPPPDKAAEGLLNYVAGHPDHHHHLDASLKSD

Homology

[Close]

BLAST of Lcy11g015980 vs. ExPASy TrEMBL
Match: A0A0A0L7E9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 76/95 (80.00%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKV+KFRFHIL  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPPPDKAAEGLLNYVAGHPDHHHHLD-ASLKSD 95
          TSLP PDKAAEGLL+YVAG    HH LD +SLKSD
Sbjct: 61 TSLPSPDKAAEGLLSYVAG----HHDLDSSSLKSD 91

[Close]

BLAST of Lcy11g015980 vs. ExPASy TrEMBL
Match: A0A2P5F8A8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_100740 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.8e-21
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+V+F+FHIL AL LC+ + +L+L+APR ++++AYFWPLLLSTALFL AVL+F  
Sbjct: 1  MEIPEKLVRFKFHILIALILCIVVSTLVLVAPRFVTVLAYFWPLLLSTALFLFAVLVFGK 60

Query: 61 TSLPP-PDKAAEGLLNYVAGHPDHHHH 87
          TS PP  DKA EGLL+YVAG PD HHH
Sbjct: 61 TSPPPAADKAGEGLLDYVAGQPDDHHH 87

[Close]

BLAST of Lcy11g015980 vs. ExPASy TrEMBL
Match: A0A2P5AA24 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_353270 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 57/96 (59.38%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 1  MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+V+F+FHIL A+ LC+ + +L+L+A R ++++AYFWPLLLSTALFL AVL+F  
Sbjct: 1  MEIPEKLVRFKFHILIAIILCIVVSTLVLVATRFVTVLAYFWPLLLSTALFLFAVLVFGK 60

Query: 61 TSLPP-PDKAAEGLLNYVAGHPD-------HHHHLD 89
          TS PP  DKA EGLL+YVAG PD       HHHH++
Sbjct: 61 TSTPPAADKAGEGLLDYVAGQPDDDDHRHHHHHHVE 96

[Close]

BLAST of Lcy11g015980 vs. ExPASy TrEMBL
Match: A0A2P6QFZ6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0053811 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.5e-19
Identity = 56/88 (63.64%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1  MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K++KF++H L AL  CLTL+SL L APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKYHFLCALIFCLTLYSLALFAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLP-----PPDKAAEGLLNYVAGHPDH 84
          TSLP       DKA EGLL+YVAG PDH
Sbjct: 61 TSLPGTDAHAADKAGEGLLDYVAGQPDH 88

[Close]

BLAST of Lcy11g015980 vs. ExPASy TrEMBL
Match: M5WI68 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.8e-19
Identity = 51/83 (61.45%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K++KF+FH L AL LCLTL+++ L+APR L+++AYFWPL LSTALFL AV++F  
Sbjct: 1  MEIPEKLLKFKFHFLFALILCLTLYAITLIAPRFLTILAYFWPLFLSTALFLFAVVVFGK 60

Query: 61 TSLPPPDKAAEGLLNYVAGHPDH 84
          T+LP  + + EGLL+YVAG P+H
Sbjct: 61 TTLPVTEASGEGLLDYVAGQPEH 83

[Close]

BLAST of Lcy11g015980 vs. NCBI nr
Match: KAG7028299.1 (hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 2.8e-31
Identity = 81/94 (86.17%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKV KFRFH LAALTLCLTLFSL+LLAPRLLSL+AYFWPLLLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 TSLPPPDKAAEGLLNYVAGHPDHHHHLDASLKSD 95
           SLPPPDK  EGLLNYVAGH D    LDASLK+D
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLD----LDASLKTD 90

[Close]

BLAST of Lcy11g015980 vs. NCBI nr
Match: KAG6596766.1 (hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.1 bits (362), Expect = 6.3e-31
Identity = 80/94 (85.11%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKV +FRFH LAALTLCLTLFSL+LLAPRLLSL+AYFWPLLLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 TSLPPPDKAAEGLLNYVAGHPDHHHHLDASLKSD 95
           SLPPPDK  EGLLNYVAGH D    LDASLK+D
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLD----LDASLKTD 90

[Close]

BLAST of Lcy11g015980 vs. NCBI nr
Match: KAG6577526.1 (hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015588.1 hypothetical protein SDJN02_23224, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.9 bits (333), Expect = 1.5e-27
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFAN 60
          MEIP KV KFRFHI+AAL L L LFSL+LLAP+ LSL+A+FWPLLLSTALFLLAVLLF N
Sbjct: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60

Query: 61 TSLPPPDKAAEGLLNYVAGHPDHHHHLDA 90
          TSLP PDKAAEGLLNYVAGHPD  HHLDA
Sbjct: 61 TSLPLPDKAAEGLLNYVAGHPD--HHLDA 87

[Close]

BLAST of Lcy11g015980 vs. NCBI nr
Match: KGN56016.1 (hypothetical protein Csa_010324 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26
Identity = 76/95 (80.00%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFAN 60
          MEIPSKV+KFRFHIL  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPPPDKAAEGLLNYVAGHPDHHHHLD-ASLKSD 95
          TSLP PDKAAEGLL+YVAG    HH LD +SLKSD
Sbjct: 61 TSLPSPDKAAEGLLSYVAG----HHDLDSSSLKSD 91

[Close]

BLAST of Lcy11g015980 vs. NCBI nr
Match: PON94035.1 (hypothetical protein TorRG33x02_100740 [Trema orientale])

HSP 1 Score: 110.5 bits (275), Expect = 7.8e-21
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 1  MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFAN 60
          MEIP K+V+F+FHIL AL LC+ + +L+L+APR ++++AYFWPLLLSTALFL AVL+F  
Sbjct: 1  MEIPEKLVRFKFHILIALILCIVVSTLVLVAPRFVTVLAYFWPLLLSTALFLFAVLVFGK 60

Query: 61 TSLPP-PDKAAEGLLNYVAGHPDHHHH 87
          TS PP  DKA EGLL+YVAG PD HHH
Sbjct: 61 TSPPPAADKAGEGLLDYVAGQPDDHHH 87

[Close]

BLAST of Lcy11g015980 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 1   MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFAN 60
           MEI +K++++RFH +  + + + + SL+  APR+L+++AYFWPL  STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  TSLPPPDKAAEGLLNYVAGHPDHHH 86
                 +   E L++YVAG P+  H
Sbjct: 182 FQQLSEEATGERLMDYVAGRPEDSH 206

[Close]

BLAST of Lcy11g015980 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-09
Identity = 42/106 (39.62%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 1   MEIPSKVVKFRFHILAALTLCLTLFSLILLAPRLLSLIAYFWPLLLSTALFLLAVLLFAN 60
           ME   K++KF+  I+ A  L L   +L+  +P  L++++YFWPL LSTALFL AV  FA 
Sbjct: 1   MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61  TSLPPPDK------------AAEGLLNYVAGHPDHHHHLDASLKSD 95
           TS  P               AAEG+L+YV G        D+  K D
Sbjct: 61  TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDILFDSFTKLD 106

The following BLAST results are available for this feature:

BLAST of Lcy11g015980 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g015980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E9	1.3e-26	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1	[more]
A0A2P5F8A8	3.8e-21	66.67	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_100740 PE=4 SV...	[more]
A0A2P5AA24	1.6e-19	59.38	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_353270 PE...	[more]
A0A2P6QFZ6	3.5e-19	63.64	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0053811 PE=4...	[more]
M5WI68	7.8e-19	61.45	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G242100 PE=4 SV=1	[more]

BLAST of Lcy11g015980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028299.1	2.8e-31	86.17	hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6596766.1	6.3e-31	85.11	hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6577526.1	1.5e-27	83.15	hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN56016.1	2.8e-26	80.00	hypothetical protein Csa_010324 [Cucumis sativus]	[more]
PON94035.1	7.8e-21	66.67	hypothetical protein TorRG33x02_100740 [Trema orientale]	[more]

BLAST of Lcy11g015980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16400.1	1.3e-10	38.82	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G13175.1	3.3e-09	39.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR34125:SF4	PROTEIN, PUTATIVE-RELATED	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g015980.1	Lcy11g015980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane