Lcy11g015950 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g015950
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr11: 38372089 .. 38372588 (+)
RNA-Seq ExpressionLcy11g015950
SyntenyLcy11g015950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAGAGCTTTCAAAGGCTGCAACAATGGCAGATCTCGGTGAACCGTGACAGCGGAGTCGACCGCGGACGGGTGGTTTTTTTTCTTTTTTCCTTTGGATGGTGCAGACAATCGAGTGCGAAACGTTGTTTCAGACGTTTCCACTCCTGTCCTTGCAGTAAAGAGGTTTCAGTCAAGATTTTTCTTTGGTAACATAAGATTAAATTGTAAAAAGAATCATACGAATTATTTCTTCTGCAAAATTTCGCTATCGTCTTCTTTGGCTGGATCTTTCGACGACGGTTGACGTAGAAGGGAAGGTAACCATTTTTTTGATGGTCAATTATTGCAGCCTGAGTTCAGTGATGGTTTTACTTTTGTGGACAGCTTCTCTACTTCTGTTGCCTCTGGTGGTGCCGCCGCTCCCTCCACCGCCGTTGGCGGTTCTCGGCTTGCCGGTCTTGATTTTGGTTGTTCTGTTGTTCTTTGCTTTCTCTTCTTCTCATCAGATCCCTAA

mRNA sequence

ATGGAGGAAGAGCTTTCAAAGGCTGCAACAATGGCAGATCTCGACAATCGAGTGCGAAACGTTGTTTCAGACGTTTCCACTCCTGTCCTTGCACCTGAGTTCAGTGATGGTTTTACTTTTGTGGACAGCTTCTCTACTTCTGTTGCCTCTGGTGGTGCCGCCGCTCCCTCCACCGCCGTTGGCGGTTCTCGGCTTGCCGGTCTTGATTTTGGTTGTTCTGTTGTTCTTTGCTTTCTCTTCTTCTCATCAGATCCCTAA

Coding sequence (CDS)

ATGGAGGAAGAGCTTTCAAAGGCTGCAACAATGGCAGATCTCGACAATCGAGTGCGAAACGTTGTTTCAGACGTTTCCACTCCTGTCCTTGCACCTGAGTTCAGTGATGGTTTTACTTTTGTGGACAGCTTCTCTACTTCTGTTGCCTCTGGTGGTGCCGCCGCTCCCTCCACCGCCGTTGGCGGTTCTCGGCTTGCCGGTCTTGATTTTGGTTGTTCTGTTGTTCTTTGCTTTCTCTTCTTCTCATCAGATCCCTAA

Protein sequence

MEEELSKAATMADLDNRVRNVVSDVSTPVLAPEFSDGFTFVDSFSTSVASGGAAAPSTAVGGSRLAGLDFGCSVVLCFLFFSSDP
Homology
[Close]
BLAST of Lcy11g015950 vs. ExPASy TrEMBL
Match: A0A5D3DPE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006780 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.8e-10
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 0 

Query: 29  VLAPEFSDGFTFVDSFSTSVASGGAAAPSTAVGGSRLAGLDFGCSVVLCFLFFSSDP 86
           +L  +FSDGFT VDSF  SVA+GGAAA ST VG SR AG D GC VVL FLFFSS P
Sbjct: 50  LLRSKFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106

[Close]
BLAST of Lcy11g015950 vs. ExPASy TrEMBL
Match: A0A1S3B754 (uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.8e-10
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 0 

Query: 29  VLAPEFSDGFTFVDSFSTSVASGGAAAPSTAVGGSRLAGLDFGCSVVLCFLFFSSDP 86
           +L  +FSDGFT VDSF  SVA+GGAAA ST VG SR AG D GC VVL FLFFSS P
Sbjct: 50  LLRSKFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106

[Close]
BLAST of Lcy11g015950 vs. ExPASy TrEMBL
Match: A0A0A0LBQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 0 

Query: 33 EFSDGFTFVDSFSTSVASGGAAAPSTAVGGSRLAGLDFGCSVVLCFLFFSSDP 86
          +FSDGFT VDSF  SVA+GGAAA S  VG SR AG D GC VVL FLFFS+DP
Sbjct: 43 KFSDGFTSVDSFFASVATGGAAASSATVGDSRAAGFDIGCFVVLGFLFFSTDP 95

[Close]
BLAST of Lcy11g015950 vs. NCBI nr
Match: XP_008443266.1 (PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 uncharacterized protein E6C27_scaffold135G002710 [Cucumis melo var. makuwa] >TYK25526.1 uncharacterized protein E5676_scaffold352G006780 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 0 

Query: 29  VLAPEFSDGFTFVDSFSTSVASGGAAAPSTAVGGSRLAGLDFGCSVVLCFLFFSSDP 86
           +L  +FSDGFT VDSF  SVA+GGAAA ST VG SR AG D GC VVL FLFFSS P
Sbjct: 50  LLRSKFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106

The following BLAST results are available for this feature:
BLAST of Lcy11g015950 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy11g015950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DPE07.8e-1070.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B7547.8e-1070.18uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=... [more]
A0A0A0LBQ93.0e-0971.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1[more]
BLAST of Lcy11g015950 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008443266.11.6e-0970.18PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 unc... [more]
BLAST of Lcy11g015950 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g015950.1Lcy11g015950.1mRNA