Lcy11g015400 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g015400
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribonuclease H-like superfamily protein
Location	Chr11: 35918286 .. 35919564 (+)
RNA-Seq Expression	Lcy11g015400
Synteny	Lcy11g015400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCAATTCTAAGCCGGAGGACCTGAATTCGGTGGCGATTATAATGTGGCAGATTTGGAACGGAAGGAATCAGAGGCTTATCGACCCAAGGAAATTTCACAGCAACCAGATTCACAATCAAATTGACAATCAATTAGGGCAGCTGAAAAGGATCTCAGGAAAGTACCAGTTCGGTCCCAAGTCGTCGCTGACAGAGAGCCTCCCAAGTCCTTCCAGATGGTCTCCCCCGCCGACCAATTGCTGGAAGCTGAACGCTGATGCTTCCTGGAACGACAGATTGATGAAGGGCGACCTCGGTTGGGTGGTTCGCGACTTTGGAGGATCTCCGATCTATGCGGGAATGAAAGTGGTGGAGAAAATTGGGACGATTAAAGATCTTGAAGCATTGGCAATCCTCGAGGGGTTGAAATGCATCCATGGAAATTACGGTGAAAAGCTTAACCTGTTACTTGAGTCCAACGCGTTGCAGGTGATCGACTGCATCAATGGCAAGGCGGAAGACCTCTCGGAAAGCAAAAACATTTTGGAAGCCATAGTCGCGTTGGCTCCGAAGCTTGGTAGCTCTGTCTTCAAGCATTGCCCCCGTGAGCAAAATCACATCGCCCACTCTTTAGCTCAGGTAACAACTTCTGAATCTCACAGTGTGAGGGGGGGGGGGGTTTGTAGGGAATGTTGTTGTTATTAAGAACGATGGTTCATTTTTTTGGTGGGAATGCTTTCCCATGTGGTTAGCCTCTTTATTTCAAGAAGAGGCAGTTGTACCGGTCTCTGTTTAATTGATTGCATTTTATTTCAAAAAAAAAAACTTGTTTTTGTTTTTAGAATTTGGATAGGAACCCAAATGTCTCCTTAACAAAAATGAAAACCATTGTTGGAAGATTGAGAGAAAACAACACAATTTTCAAAAACCAAAAACAAAAACGAAATGGTTATCAAACGGGACCATTAAATCCAATTAAATGGGAATTAGATGTCACCTAGAATTTCATTTAAAATCTCAAATTTATCTCCTTAAAAGATTTGGAAAAGAAAATAACCTAATTGAGTTAGGATTTACATCTTTTGAAATATTAGATAGATAGATAAATATCTATTATTAAACCTCCAAAAGATTTAATTTTAAAAACTTTTTTCCCTAAATTATATAAATTTAATTTAACAACTTCAGGCTAAACTTAAATTCTAATTTTTCTAAATTAAAACAAAAACGTTCAACAAATCCAAAATGATTGATTTCGAAACGTGAAACGTTACAGGTTACTCATTTACAGAAATGA

mRNA sequence

ATGCTCAATTCTAAGCCGGAGGACCTGAATTCGGTGGCGATTATAATGTGGCAGATTTGGAACGGAAGGAATCAGAGGCTTATCGACCCAAGGAAATTTCACAGCAACCAGATTCACAATCAAATTGACAATCAATTAGGGCAGCTGAAAAGGATCTCAGGAAAGTACCAGTTCGGTCCCAAGTCGTCGCTGACAGAGAGCCTCCCAAGTCCTTCCAGATGGTCTCCCCCGCCGACCAATTGCTGGAAGCTGAACGCTGATGCTTCCTGGAACGACAGATTGATGAAGGGCGACCTCGGTTGGGTGGTTCGCGACTTTGGAGGATCTCCGATCTATGCGGGAATGAAAGTGGTGGAGAAAATTGGGACGATTAAAGATCTTGAAGCATTGGCAATCCTCGAGGGGTTGAAATGCATCCATGGAAATTACGGTGAAAAGCTTAACCTGTTACTTGAGTCCAACGCGTTGCAGGTGATCGACTGCATCAATGGCAAGGCGGAAGACCTCTCGGAAAGCAAAAACATTTTGGAAGCCATAGTCGCGTTGGCTCCGAAGCTTGGTAGCTCTGTCTTCAAGCATTGCCCCCGTGAGCAAAATCACATCGCCCACTCTTTAGCTCAGGTTACTCATTTACAGAAATGA

Coding sequence (CDS)

ATGCTCAATTCTAAGCCGGAGGACCTGAATTCGGTGGCGATTATAATGTGGCAGATTTGGAACGGAAGGAATCAGAGGCTTATCGACCCAAGGAAATTTCACAGCAACCAGATTCACAATCAAATTGACAATCAATTAGGGCAGCTGAAAAGGATCTCAGGAAAGTACCAGTTCGGTCCCAAGTCGTCGCTGACAGAGAGCCTCCCAAGTCCTTCCAGATGGTCTCCCCCGCCGACCAATTGCTGGAAGCTGAACGCTGATGCTTCCTGGAACGACAGATTGATGAAGGGCGACCTCGGTTGGGTGGTTCGCGACTTTGGAGGATCTCCGATCTATGCGGGAATGAAAGTGGTGGAGAAAATTGGGACGATTAAAGATCTTGAAGCATTGGCAATCCTCGAGGGGTTGAAATGCATCCATGGAAATTACGGTGAAAAGCTTAACCTGTTACTTGAGTCCAACGCGTTGCAGGTGATCGACTGCATCAATGGCAAGGCGGAAGACCTCTCGGAAAGCAAAAACATTTTGGAAGCCATAGTCGCGTTGGCTCCGAAGCTTGGTAGCTCTGTCTTCAAGCATTGCCCCCGTGAGCAAAATCACATCGCCCACTCTTTAGCTCAGGTTACTCATTTACAGAAATGA

Protein sequence

MLNSKPEDLNSVAIIMWQIWNGRNQRLIDPRKFHSNQIHNQIDNQLGQLKRISGKYQFGPKSSLTESLPSPSRWSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMKVVEKIGTIKDLEALAILEGLKCIHGNYGEKLNLLLESNALQVIDCINGKAEDLSESKNILEAIVALAPKLGSSVFKHCPREQNHIAHSLAQVTHLQK

Homology

[Close]

BLAST of Lcy11g015400 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-23
Identity = 71/204 (34.80%), Postives = 110/204 (53.92%), Query Frame = 0


Query: 7   EDLNSVAIIMWQIWNGRNQRLIDPRKFHSNQIHNQIDNQLGQLKRISGKYQFGPKSSLT- 66
           EDL+ + I  W IWN RN  +           H+     + QL +   +  +  ++SL+ 
Sbjct: 8   EDLDVLLIGSWVIWNHRNYVIFRGE-------HSSFSTMIQQLTKFVTESSYQSETSLSM 67

Query: 67  --ESLPSPSRWSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMKVVEKIGT 126
             ++L +  +W PPP + W LNADASW+D   +G +GW++R + G  + AG + VE    
Sbjct: 68  LHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNN 127

Query: 127 IKDLEALAILEGLKCIHGNYGEKLNLLLESNALQVIDCINGKAEDLSESKNILEAIVALA 186
           +K LEA AILEGL+ +  N G    L +E+++ +V   +N K EDL+++  ++E I+ L 
Sbjct: 128 VKLLEASAILEGLRNL-TNLGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLR 187

Query: 187 PKLGSSVFKHCPREQNHIAHSLAQ 208
                  F    RE N  AHSLAQ
Sbjct: 188 DSCEILAFAKVGRETNGCAHSLAQ 203

[Close]

BLAST of Lcy11g015400 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.5e-17
Identity = 64/213 (30.05%), Postives = 100/213 (46.95%), Query Frame = 0


Query: 7   EDLNSVAIIMWQIWNGRNQRLIDPRKFHSNQIHNQID----NQLGQLKRISGKYQFGPKS 66
           E+     II WQIW  RN+ +       +  I   ID    N  G+   + GK       
Sbjct: 7   EERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGK-SANKDL 66

Query: 67  SLTESL--PSPSRWSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMKVVEK 126
            L   +   + +RW PP +N WKLN DA+W      G +GW++RD  G  I A  +++  
Sbjct: 67  HLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRT 126

Query: 127 IGTIKDLEALAILEGLKCIHGNYGEKLN------LLLESNALQVIDCINGKAEDLSESKN 186
              I  LE +AI EGL+ I   +   +       + LES++L+ I  ++ + +D +E   
Sbjct: 127 ERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIW 186

Query: 187 ILEAIVALAPKLGSSVFKHCPREQNHIAHSLAQ 208
           +LE I  +   +     +H  RE N +AH LA+
Sbjct: 187 LLEEIWQMMEDMKIVSMRHISREANKVAHDLAR 218

[Close]

BLAST of Lcy11g015400 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 0


Query: 7   EDLNSVAIIMWQIWNGRNQRLIDPRKFHSNQ--------IHNQIDNQ--LGQLKRISGKY 66
           E++ +  +I WQIW  RN+ +         Q        I++ ID    + Q +R     
Sbjct: 29  EEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQND 88

Query: 67  QFGPKSSLTESLPSPSRWSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMK 126
            + P+     ++    RWS PPTNCWKLN DASW++    G +GW++ D  G  + AG  
Sbjct: 89  GYLPRGRENLNMLG-VRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNC 148

Query: 127 VVEKIGTIKDLEALAILEGLKCIHGNYGEKLNLLLESNALQVIDCINGKAEDLS 171
            + +   I  LE + I+ GL+ I  N   +  + LES++++VI  +  +  DL+
Sbjct: 149 KIREKKEINALELMTIIRGLQFI--NMQSRSPIYLESDSVEVIRLMKKEDVDLT 199

[Close]

BLAST of Lcy11g015400 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.5e-13
Identity = 63/202 (31.19%), Postives = 95/202 (47.03%), Query Frame = 0


Query: 14  IIMWQIWNGRNQRLIDPRKFHSNQIHNQIDNQLGQLKRI---SGKYQF-----GPKSSLT 73
           +++W IW  RNQ            +H+ I+    Q  R    S  Y+F     G  +   
Sbjct: 21  VLLWSIWTYRNQ-----------IVHSTIEQPCSQKIRAFTESKIYEFTTNLGGNLNMED 80

Query: 74  ESLPSPSRWSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMKVVEKIGTIK 133
           ++LP    W+PP  + WKLN DA+W D L  G LGW+VRD  G  I A  + ++ +    
Sbjct: 81  KNLPRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMA--ECLKALSQSL 140

Query: 134 DLEALAILEGLKCIHGNYGEKLNLLLESNALQVIDCINGKAEDLSESKNILEAIVALAPK 193
            LEA     G+K           + +ES+ L+V++ IN  +  L+E   I+E I      
Sbjct: 141 TLEA-----GIK-----------IEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEMES 193

Query: 194 LGSSVFKHCPREQNHIAHSLAQ 208
           L    FKH P + N +AH +A+
Sbjct: 201 LPIEGFKHLPMKANGVAHGIAR 193

[Close]

BLAST of Lcy11g015400 vs. ExPASy TrEMBL
Match: A0A803L9N8 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-12
Identity = 64/202 (31.68%), Postives = 101/202 (50.00%), Query Frame = 0


Query: 14  IIMWQIWNGRNQRL-----IDPRKFHSNQIHNQIDNQLGQLKRISGKYQFGPKSSLTESL 73
           + +W+IW  RN+ L     +DP    S  + N  D  +    R        P +S+  S 
Sbjct: 70  MFIWKIWEMRNKWLFEQVRVDPLIACSKTL-NFFDEYVAANLR-------EPTTSIERSS 129

Query: 74  PSPSRWSPPPTNCWKLNADASWN-DRLMKGDLGWVVRDFGGSPIYAGMKVVEKIGTIKDL 133
                W PP ++ +KLN DAS + DR  +G LG VVRD  G  +    K +   G I ++
Sbjct: 130 EVTGLWIPPTSSRYKLNTDASISKDR--RGGLGMVVRDNIGDVMMTWGKSLNGTGIISEI 189

Query: 134 EALAILEGLKCIHGNYGEKLNLLLESNALQVIDCINGKAEDLSESKNILEAIVALAPKLG 193
           EA+A+L G++ +      KL   + S+ LQVI+ +NG   + S ++ I+  I++ A    
Sbjct: 190 EAVALLFGMRAVFDAGFRKLE--VSSDCLQVIELLNGSKHENSPTQLIVTDILSFAYSFD 249

Query: 194 SSVFKHCPREQNHIAHSLAQVT 210
              F  CPR  N +AHS+A ++
Sbjct: 250 FVCFSFCPRLCNKVAHSMANLS 259

[Close]

BLAST of Lcy11g015400 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 2.9e-23
Identity = 71/204 (34.80%), Postives = 110/204 (53.92%), Query Frame = 0


Query: 7   EDLNSVAIIMWQIWNGRNQRLIDPRKFHSNQIHNQIDNQLGQLKRISGKYQFGPKSSLT- 66
           EDL+ + I  W IWN RN  +           H+     + QL +   +  +  ++SL+ 
Sbjct: 8   EDLDVLLIGSWVIWNHRNYVIFRGE-------HSSFSTMIQQLTKFVTESSYQSETSLSM 67

Query: 67  --ESLPSPSRWSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMKVVEKIGT 126
             ++L +  +W PPP + W LNADASW+D   +G +GW++R + G  + AG + VE    
Sbjct: 68  LHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNN 127

Query: 127 IKDLEALAILEGLKCIHGNYGEKLNLLLESNALQVIDCINGKAEDLSESKNILEAIVALA 186
           +K LEA AILEGL+ +  N G    L +E+++ +V   +N K EDL+++  ++E I+ L 
Sbjct: 128 VKLLEASAILEGLRNL-TNLGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLR 187

Query: 187 PKLGSSVFKHCPREQNHIAHSLAQ 208
                  F    RE N  AHSLAQ
Sbjct: 188 DSCEILAFAKVGRETNGCAHSLAQ 203

[Close]

BLAST of Lcy11g015400 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-16
Identity = 64/213 (30.05%), Postives = 100/213 (46.95%), Query Frame = 0


Query: 7   EDLNSVAIIMWQIWNGRNQRLIDPRKFHSNQIHNQID----NQLGQLKRISGKYQFGPKS 66
           E+     II WQIW  RN+ +       +  I   ID    N  G+   + GK       
Sbjct: 7   EERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGK-SANKDL 66

Query: 67  SLTESL--PSPSRWSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMKVVEK 126
            L   +   + +RW PP +N WKLN DA+W      G +GW++RD  G  I A  +++  
Sbjct: 67  HLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRT 126

Query: 127 IGTIKDLEALAILEGLKCIHGNYGEKLN------LLLESNALQVIDCINGKAEDLSESKN 186
              I  LE +AI EGL+ I   +   +       + LES++L+ I  ++ + +D +E   
Sbjct: 127 ERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIW 186

Query: 187 ILEAIVALAPKLGSSVFKHCPREQNHIAHSLAQ 208
           +LE I  +   +     +H  RE N +AH LA+
Sbjct: 187 LLEEIWQMMEDMKIVSMRHISREANKVAHDLAR 218

[Close]

BLAST of Lcy11g015400 vs. NCBI nr
Match: XP_024041966.1 (uncharacterized protein LOC112099096 [Citrus clementina])

HSP 1 Score: 88.6 bits (218), Expect = 7.1e-14
Identity = 64/205 (31.22%), Postives = 103/205 (50.24%), Query Frame = 0


Query: 12  VAIIMWQIWNGRNQRLIDPRKFHSNQIHNQIDNQLGQLKRISGKYQFGPKSSLTESLPSP 71
           VA ++W IWN RN+ L + ++ +  ++    +  +   K+I    Q         +    
Sbjct: 44  VAALLWAIWNARNKWLFEGKQENPLRVVANAEAIVESFKKIR---QLEIAYKTKRNAERQ 103

Query: 72  SRWSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMKVVEKIGTIKDLEALA 131
            +WSPPP    K+N DA+ +       LG VVRD  G+   A +K +   G++   EA A
Sbjct: 104 KQWSPPPNGWQKVNVDAAVDVENQMAGLGVVVRDSDGNCRAAAIKSLRLPGSVAMAEATA 163

Query: 132 ILEGLKCIHGNYGEKLNL---LLESNALQVIDCINGKAEDLSESKNILEAIVALAPKLGS 191
           +  GL+       EK N+   + ES++L+VID IN K+  L+E   ++  I        +
Sbjct: 164 MEWGLQ-----VAEKANITFRIFESDSLEVIDLINKKSSSLTEIGWLISDIQENLQNFQN 223

Query: 192 SVFKHCPREQNHIAHSLAQVTHLQK 214
              +HCPR+ N+ AHSLA++  LQK
Sbjct: 224 FKAQHCPRDCNYAAHSLAKLA-LQK 239

[Close]

BLAST of Lcy11g015400 vs. NCBI nr
Match: XP_030967655.1 (uncharacterized protein LOC115988151 [Quercus lobata])

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-13
Identity = 63/202 (31.19%), Postives = 94/202 (46.53%), Query Frame = 0


Query: 6   PEDLNSVAIIMWQIWNGRNQRLIDPRKFHSNQIHNQIDNQLGQLKRISGKYQFGPKSSLT 65
           P DL     + W IW  RNQ + D       Q+    +  LG+ K       F P     
Sbjct: 160 PNDLELFFAVAWSIWWNRNQAIFDDSGTPPGQVWEMANRTLGEYKAACTLPVFSPP---- 219

Query: 66  ESLPSPSRWSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMKVVEKIGTIK 125
              PSPS W  PP   +K+N D +  D      +G V+RD  GS I A  KV++   + +
Sbjct: 220 ---PSPSVWQAPPPGFYKVNVDGAAFDDDRPSCIGVVIRDCLGSLIAASSKVLQTAFSAE 279

Query: 126 DLEALAILEGLKCIHGNYGEKLNLLLESNALQVIDCINGKAEDLSESKNILEAIVALAPK 185
             EALA+ EG+  +  +     ++L+ES+AL VI  I+   +  SE  +I++ I  ++  
Sbjct: 280 TTEALALQEGV--LLASAMGISHVLVESDALSVIQGIS-SCDTGSEQGHIIQNIKDVSSS 339

Query: 186 LGSSVFKHCPREQNHIAHSLAQ 208
                F+H  R  N  AH LA+
Sbjct: 340 FTWCSFQHLKRSGNRAAHDLAR 351

[Close]

BLAST of Lcy11g015400 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 4.6e-13
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 0


Query: 7   EDLNSVAIIMWQIWNGRNQRLIDPRKFHSNQ--------IHNQIDNQ--LGQLKRISGKY 66
           E++ +  +I WQIW  RN+ +         Q        I++ ID    + Q +R     
Sbjct: 29  EEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQTRRSQQND 88

Query: 67  QFGPKSSLTESLPSPSRWSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMK 126
            + P+     ++    RWS PPTNCWKLN DASW++    G +GW++ D  G  + AG  
Sbjct: 89  GYLPRGRENLNMLG-VRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNC 148

Query: 127 VVEKIGTIKDLEALAILEGLKCIHGNYGEKLNLLLESNALQVIDCINGKAEDLS 171
            + +   I  LE + I+ GL+ I  N   +  + LES++++VI  +  +  DL+
Sbjct: 149 KIREKKEINALELMTIIRGLQFI--NMQSRSPIYLESDSVEVIRLMKKEDVDLT 199

[Close]

BLAST of Lcy11g015400 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 48/196 (24.49%), Postives = 94/196 (47.96%), Query Frame = 0


Query: 15  IMWQIWNGRNQRLIDPRKFHSNQIHNQIDNQLGQLKRISGKYQFGPKSSLTESLPSPSRW 74
           ++W++W  RN+ +   R+F++ ++  + ++ L + +  +     G K  +  S  S  RW
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRS--SCGRW 422

Query: 75  SPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMKVVEKIGTIKDLEALAI-- 134
            PPP    K N DA+WN    +  +GWV+R+  G   + G + + K+ ++ + E  A+  
Sbjct: 423 RPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRW 482

Query: 135 -LEGLKCIHGNYGEKLNLLLESNALQVIDCINGKAEDLSESKNILEAIVALAPKLGSSVF 194
            +  L     NY     ++ ES++  +I+ +N   E     K  ++ +  L  +     F
Sbjct: 483 AVLSLSRFQYNY-----VIFESDSQVLIEILNND-EIWPSLKPTIQDLQRLLSQFTEVKF 542

Query: 195 KHCPREQNHIAHSLAQ 208
              PRE N +A  +A+
Sbjct: 543 VFIPREGNTLAERVAR 550

[Close]

BLAST of Lcy11g015400 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 8.2e-08
Identity = 44/203 (21.67%), Postives = 92/203 (45.32%), Query Frame = 0


Query: 10  NSVAIIMWQIWNGRNQRLIDPRKFHSNQIHNQIDNQLGQ---LKRISGKYQFGPKSSLTE 69
           N V  ++W++W  RN+ +   +++ + ++  +      +    + + GK   GP+     
Sbjct: 75  NLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKAS-GPQVERNL 134

Query: 70  SLPSPSRWSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMKVVEKIGTIKD 129
           S+    +W  PP    K N DA+W     +  +GW++R+  G  ++ G + + +   + +
Sbjct: 135 SV----QWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLE 194

Query: 130 LEALAILEG-LKCIHGNYGEKLNLLLESNALQVIDCINGKAEDLSES-KNILEAIVALAP 189
            E  A+    L     NY     ++ ES+A  +++ +N  ++D   + +  LE I  L  
Sbjct: 195 AELEALRWAVLTMSRFNY---KRIIFESDAQALVNLLN--SDDFWPTLQPALEDIQQLLH 254

Query: 190 KLGSSVFKHCPREQNHIAHSLAQ 208
                 F+  PR  N +A  +A+
Sbjct: 255 HFEEVKFEFTPRGGNKVADRIAR 267

[Close]

BLAST of Lcy11g015400 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-07
Identity = 55/206 (26.70%), Postives = 88/206 (42.72%), Query Frame = 0


Query: 15  IMWQIWNGRNQRLIDPRKFHSNQIHNQIDNQLGQLKRISGKYQFGPKSSLTES---LPSP 74
           ++W+IW  RN           N + N+      +   +S K +     + T+S    PSP
Sbjct: 268 LIWRIWKARN-----------NVVFNKFRESPSKTV-LSAKAETHDWLNATQSHKKTPSP 327

Query: 75  SR--------WSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMKVVEKIGT 134
           +R        W  PP    K N DA ++ + ++   GW++R+  G+PI  G   +     
Sbjct: 328 TRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSN 387

Query: 135 IKDLEALAILEGLK--CIHGNYGEKLNLLLESNALQVIDCINGKAEDLSESKNILEAIVA 194
             + E  A+L  L+   I G       + +E +   +I+ ING +   S   N LE I  
Sbjct: 388 PLEAETKALLAALQQTWIRG----YTQVFMEGDCQTLINLINGISFH-SSLANHLEDISF 447

Query: 195 LAPKLGSSVFKHCPREQNHIAHSLAQ 208
            A K  S  F    R+ N +AH LA+
Sbjct: 448 WANKFASIQFGFIRRKGNKLAHVLAK 456

[Close]

BLAST of Lcy11g015400 vs. TAIR 10
Match: AT1G27870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.9e-04
Identity = 28/93 (30.11%), Postives = 42/93 (45.16%), Query Frame = 0


Query: 73  RWSPPPTNCWKLNADASWNDRLMKGDLGWVVRDFGGSPIYAGMKVVEKIGTIKDLEALAI 132
           RW  P     K N D S+ +  +K   GWVVRD  GS + AG  +  K+    + E  A+
Sbjct: 51  RWRRPERGWIKCNFDGSFVNGDVKSKAGWVVRDSNGSYLLAGQAIGRKVDNALESEIQAL 110

Query: 133 LEGLK-CIHGNYGEKLNLLLESNALQVIDCING 165
           +  ++ C    Y     +  E +   + D ING
Sbjct: 111 IISMQHCWSHGY---KRVCFEGDNKMLFDLING 140

The following BLAST results are available for this feature:

BLAST of Lcy11g015400 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g015400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	1.4e-23	34.80	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DSV1	7.5e-17	30.05	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CQG0	2.2e-13	30.46	uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1D4B6	6.5e-13	31.19	uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A803L9N8	1.5e-12	31.68	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]

BLAST of Lcy11g015400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	2.9e-23	34.80	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022156777.1	1.5e-16	30.05	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_024041966.1	7.1e-14	31.22	uncharacterized protein LOC112099096 [Citrus clementina]	[more]
XP_030967655.1	4.6e-13	31.19	uncharacterized protein LOC115988151 [Quercus lobata]	[more]
XP_022143317.1	4.6e-13	30.46	uncharacterized protein LOC111013216 [Momordica charantia]	[more]

BLAST of Lcy11g015400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	1.1e-12	24.49	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	8.2e-08	21.67	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G09510.1	1.8e-07	26.70	Ribonuclease H-like superfamily protein	[more]
AT1G27870.1	1.9e-04	30.11	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 85..207 e-value: 1.4E-17 score: 63.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 80..209 e-value: 5.8E-12 score: 47.8
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 69..210
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 84..206 e-value: 2.11806E-18 score: 75.8136
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 80..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g015400.1	Lcy11g015400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity