Lcy11g015340 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g015340
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribonuclease H
Location	Chr11: 35490221 .. 35491080 (+)
RNA-Seq Expression	Lcy11g015340
Synteny	Lcy11g015340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCAAAAACCATGATAAAAGAAGGATTTGAACCTGGTGCCTGGGAAAATATCAACAAGGAAGAAGGCAACCAGTATGTTTGCTTAAAGTTGTTGAAAAGTTTGGTTTAGGTTATGAGCCAACTGTTGTAGACTGGAAGATTGTTCAAGAAGAAAAAAGAAAGCAGAGGAGCGCCAAATTAGAAAATCGAGAAGTAAGTACTAAGAGAATGATCATACCCCATCTCTATGAGACTTTCAAGAAGAGCAAAGTTGAAGCAGATAAGTTAGTATTAGAGATGTCAAATTTATCCATCACCGCCATCATTGAAGATCATGTGGAATCTGTAGATTCCTTGATATACAAGTGCCCTCCAGGTTTCGAACTATGCAATTGGGAATCCACATAATTGCCTATTCATTTTGAAGAAGCCCAAGAGTAATTTAGTTTCCTTCATTTTGTCATTATTTCCTATTAGTTATGCCCAAGACTATAGGAATTTTCATTTTGTAATAGGGCGTCCTATTTTGCATTCTCAATAAAGTTGTTTCTCATTTTTTATTTCACATCATTTACTAGTCTCTTCTCTTTTTCCTTTCTCCCCCTCTTGTCTCTCTCACGAATTAATTTAGGATTGATAACAATTCATTTGAAAGCAAAAGCGATAGTGATTTTAGGCTTGATTTCAATGTTCTAATCTCGAATGTTGAATATGATGAAGAAGATAGCGACATTATCGAGGAAATATCTCCTGAGTTGTTACATTTAGTACAAGAAGAGGAAAGGATCACTTTACCTCACCATGAAATAATAGAAACTATCAATTTAGGAACAAGTGAAGAAATTAAAAAGGTTCGGGTTGGGAATACCTCTAAAG

mRNA sequence

ATGGTTGCAAAAACCATGATAAAAGAAGGATTTGAACCTGGTGCCTGGGAAAATATCAACAAGGAAGAAGGCAACCAGATTGATAACAATTCATTTGAAAGCAAAAGCGATAGTGATTTTAGGCTTGATTTCAATGTTCTAATCTCGAATGTTGAATATGATGAAGAAGATAGCGACATTATCGAGGAAATATCTCCTGAGTTGTTACATTTAGTACAAGAAGAGGAAAGGATCACTTTACCTCACCATGAAATAATAGAAACTATCAATTTAGGAACAAGTGAAGAAATTAAAAAGGTTCGGGTTGGGAATACCTCTAAAG

Coding sequence (CDS)

ATGGTTGCAAAAACCATGATAAAAGAAGGATTTGAACCTGGTGCCTGGGAAAATATCAACAAGGAAGAAGGCAACCAGATTGATAACAATTCATTTGAAAGCAAAAGCGATAGTGATTTTAGGCTTGATTTCAATGTTCTAATCTCGAATGTTGAATATGATGAAGAAGATAGCGACATTATCGAGGAAATATCTCCTGAGTTGTTACATTTAGTACAAGAAGAGGAAAGGATCACTTTACCTCACCATGAAATAATAGAAACTATCAATTTAGGAACAAGTGAAGAAATTAAAAAGGTTCGGGTTGGGAATACCTCTAAAG

Protein sequence

MVAKTMIKEGFEPGAWENINKEEGNQIDNNSFESKSDSDFRLDFNVLISNVEYDEEDSDIIEEISPELLHLVQEEERITLPHHEIIETINLGTSEEIKKVRVGNTSK

Homology

[Close]

BLAST of Lcy11g015340 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-07
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 10   GFEPGAWE---NINKEEGNQ-IDNNSFESKSDSDFRLDFNVLISNVEYDEEDSDIIEEIS 69
            GFE   WE    +   +G+Q I N +   + D D  +DF V I N+E +  + +   +IS
Sbjct: 1088 GFELNNWEIKKTLKVTKGSQKIHNRNTRVEGDVDDTVDFEVPICNLEQNIGEGE--SDIS 1147

Query: 70   PELLHLVQEEERITLPHHEIIETINLGTSEEIKKVRVG 104
            PELL L+++EE+ T+P+ E ++ INLGT EE+K+VR+G
Sbjct: 1148 PELLRLIEQEEKKTMPYQETLKVINLGTPEEVKEVRIG 1183

[Close]

BLAST of Lcy11g015340 vs. ExPASy TrEMBL
Match: A0A5A7TZF3 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001550 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-07
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 10  GFEPGAWE---NINKEEGNQ-IDNNSFESKSDSDFRLDFNVLISNVEYDEEDSDIIEEIS 69
           GFE   WE    +   +G+Q I N +   + D D  +DF V I N+E +  + +   +IS
Sbjct: 62  GFELNNWEIKKTLKVTKGSQKIHNRNTRVEGDVDDAVDFEVPICNLEQNIGEGE--SDIS 121

Query: 70  PELLHLVQEEERITLPHHEIIETINLGTSEEIKKVRVG 104
           PELL L+++EE+ T+P+ E ++ INLGT EE+K+VR+G
Sbjct: 122 PELLRLIEQEEKKTMPYQETLKVINLGTPEEVKEVRIG 157

[Close]

BLAST of Lcy11g015340 vs. ExPASy TrEMBL
Match: A0A5A7U7X5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001520 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 11  FEPGAWENINKEEGNQIDNNSFES---KSDSDFRLDFNVLISNVEYDEEDSDIIEEISPE 70
           FE   WE I K     ++   FES   + D D  +DF V I N+E + E+ +   + SPE
Sbjct: 365 FELNNWE-IKK----TLEVTGFESTRVEGDVDDAIDFEVPICNLEQNIEEGEY--DTSPE 424

Query: 71  LLHLVQEEERITLPHHEIIETINLGTSEEIKKVRVG 104
           LL L+++EE+ T+P+ E ++ INLGT EE+KKVR+G
Sbjct: 425 LLRLIEQEEKKTMPYQETLKVINLGTLEEVKKVRIG 453

[Close]

BLAST of Lcy11g015340 vs. ExPASy TrEMBL
Match: A0A5A7U6Y3 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold610G00600 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.6e-06
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 35  KSDSDFRLDFNVLISNVEYDEEDSDIIEEISPELLHLVQEEERITLPHHEIIETINLGTS 94
           + D D  +DF V I N+EYD ED +    ISPELL L+Q+EE+ T+P+ E ++ INLGT 
Sbjct: 6   EGDIDDVVDFEVPIYNLEYDIEDDE--SNISPELLRLIQQEEKKTMPYQETLKVINLGTL 65

Query: 95  EEIKK 100
           EE+K+
Sbjct: 66  EEVKE 68

[Close]

BLAST of Lcy11g015340 vs. ExPASy TrEMBL
Match: A0A5A7UA36 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00210 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 10  GFEPGAWENINKEEGNQIDNNSFESKSDSDFRLDFNVLISNVEYDEEDSDIIEEISPELL 69
           GFE   WE   K+       +S   + D D  +DF V I N+E + E+ +   +ISPEL 
Sbjct: 323 GFELNNWE--IKKTLEVTKGSSTRVEGDVDDAVDFEVPICNLEQNIEEGE--SDISPELR 382

Query: 70  HLVQEEERITLPHHEIIETINLGTSEEIKKVRVG 104
            L+++EE+ T+P+ E ++ INLGT EE+K+V++G
Sbjct: 383 RLIEQEEKKTMPYQETLKVINLGTLEEVKEVQIG 412

[Close]

BLAST of Lcy11g015340 vs. NCBI nr
Match: KAA0046609.1 (hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-07
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 10  GFEPGAWE---NINKEEGNQ-IDNNSFESKSDSDFRLDFNVLISNVEYDEEDSDIIEEIS 69
           GFE   WE    +   +G+Q I N +   + D D  +DF V I N+E +  + +   +IS
Sbjct: 62  GFELNNWEIKKTLKVTKGSQKIHNRNTRVEGDVDDAVDFEVPICNLEQNIGEGE--SDIS 121

Query: 70  PELLHLVQEEERITLPHHEIIETINLGTSEEIKKVRVG 104
           PELL L+++EE+ T+P+ E ++ INLGT EE+K+VR+G
Sbjct: 122 PELLRLIEQEEKKTMPYQETLKVINLGTPEEVKEVRIG 157

[Close]

BLAST of Lcy11g015340 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-07
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 10   GFEPGAWE---NINKEEGNQ-IDNNSFESKSDSDFRLDFNVLISNVEYDEEDSDIIEEIS 69
            GFE   WE    +   +G+Q I N +   + D D  +DF V I N+E +  + +   +IS
Sbjct: 1088 GFELNNWEIKKTLKVTKGSQKIHNRNTRVEGDVDDTVDFEVPICNLEQNIGEGE--SDIS 1147

Query: 70   PELLHLVQEEERITLPHHEIIETINLGTSEEIKKVRVG 104
            PELL L+++EE+ T+P+ E ++ INLGT EE+K+VR+G
Sbjct: 1148 PELLRLIEQEEKKTMPYQETLKVINLGTPEEVKEVRIG 1183

[Close]

BLAST of Lcy11g015340 vs. NCBI nr
Match: KAA0049671.1 (uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12201.1 uncharacterized protein E5676_scaffold106G001520 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 41/96 (42.71%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 11  FEPGAWENINKEEGNQIDNNSFES---KSDSDFRLDFNVLISNVEYDEEDSDIIEEISPE 70
           FE   WE I K     ++   FES   + D D  +DF V I N+E + E+ +   + SPE
Sbjct: 365 FELNNWE-IKK----TLEVTGFESTRVEGDVDDAIDFEVPICNLEQNIEEGEY--DTSPE 424

Query: 71  LLHLVQEEERITLPHHEIIETINLGTSEEIKKVRVG 104
           LL L+++EE+ T+P+ E ++ INLGT EE+KKVR+G
Sbjct: 425 LLRLIEQEEKKTMPYQETLKVINLGTLEEVKKVRIG 453

[Close]

BLAST of Lcy11g015340 vs. NCBI nr
Match: XP_017974534.1 (PREDICTED: uncharacterized protein LOC108661595 [Theobroma cacao])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 26  QIDNNSFESKSDSDFRLDFNVLISNVEYDEEDSDIIEEISPELLHLVQEEERITLPHHEI 85
           QI NN  E  +DSDF ++F    S  E D  ++    +++P+LL L+++E R  +PH E 
Sbjct: 913 QIPNNECEDDNDSDFEVNFEKGTSVSELDNTENVKNYDLTPDLLRLLEQEGRQIVPHQET 972

Query: 86  IETINLGTSEEIKKVRVGNT 106
           +ETINLG  E  K+VR+G T
Sbjct: 973 LETINLGNEENKKEVRIGTT 992

[Close]

BLAST of Lcy11g015340 vs. NCBI nr
Match: KAA0051512.1 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa] >TYK24154.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 35  KSDSDFRLDFNVLISNVEYDEEDSDIIEEISPELLHLVQEEERITLPHHEIIETINLGTS 94
           + D D  +DF V I N+EYD ED +    ISPELL L+Q+EE+ T+P+ E ++ INLGT 
Sbjct: 6   EGDIDDVVDFEVPIYNLEYDIEDDE--SNISPELLRLIQQEEKKTMPYQETLKVINLGTL 65

Query: 95  EEIKK 100
           EE+K+
Sbjct: 66  EEVKE 68

The following BLAST results are available for this feature:

BLAST of Lcy11g015340 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g015340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAU5	3.5e-07	40.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TZF3	3.5e-07	40.82	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00155...	[more]
A0A5A7U7X5	1.7e-06	42.71	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00152...	[more]
A0A5A7U6Y3	6.6e-06	50.77	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H OS=Cucumis m...	[more]
A0A5A7UA36	1.5e-05	39.36	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Lcy11g015340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046609.1	7.3e-07	40.82	hypothetical protein E6C27_scaffold114G001550 [Cucumis melo var. makuwa]	[more]
KAA0065293.1	7.3e-07	40.82	uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]	[more]
KAA0049671.1	3.6e-06	42.71	uncharacterized protein E6C27_scaffold76G00060 [Cucumis melo var. makuwa] >TYK12...	[more]
XP_017974534.1	1.0e-05	42.50	PREDICTED: uncharacterized protein LOC108661595 [Theobroma cacao]	[more]
KAA0051512.1	1.4e-05	50.77	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis mel...	[more]

BLAST of Lcy11g015340 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g015340.1	Lcy11g015340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid