Lcy11g015230 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g015230
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr11: 34545908 .. 34549658 (+)
RNA-Seq ExpressionLcy11g015230
SyntenyLcy11g015230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCTAGAAATCTCTCAGAAAGTAAGGGCACGGTAACCTTAGAGAGAGGGAAATTTTGGGGAATCCGAATAGAGAATCCCTTTACTTTGAAGGTGGGTCAAATATATTTCTTTCCTCCATTGTCGACCGTCTTTTGTCTCTAACCAGTTTCTTTCTTTAGCTTTCTCTTTCACACTGATGGATCAAGCATAAACTGCTGAGAGAAGCTGGCTTCTGTTTTTTTTCATTTCATTTAGAATTTTACTGAAAGGGTTTTGTTCTGTTCATTTCACCGCCGATGATTAATTTTAGGAAATTCCTTAAGTTTTTCATCTTTTTGGTGAAATTGAAGTTGTTCTTGTTTAATTTGTAATTGTAATTTTCCCTTTTTCATATACCCTTTTGCTCAAATATCATGAGAATCTCTCGGTCTTTTCCATTTCTACTTGTCCCTGTCTTGTATGGATATATACAGTCGTGAGATTGAGTTAACTTAAAATGTTAATGGATACTTAGTTCTACATTTTTTTCCCTCTTTTCTCTCTTTAAGACTCCCCCTTCTCTGTATTTTTTTTTTCTTTTTTCAGATTCTCTCATCCTTTCAAGCCAGAGAAGGAGGAAGGAGGAATTTTTTTTTTTTAAAAAATCAACCGACCTGGTCAATTCTGAACTGGGTCGGGTCGGGTCGGGCCATTGTGTCCGTACAAACCGATCAGGGTCGGGTCGGGTCGGTTTTGTCCGTACAACCGACCCGACCCAAACATTTTACACCCCTAATTATTAGTTACTAAATTGATAGTCAATAGATTATGAAATGCCAAAGAAAAAAGTTCTATGAACGTAGAGGTTATAATTTGCACCCTTCAGAATTTTTTTTTTAAACAATTTTAGGGTTTCCATCAGAAGAAATGGGTACCTTTGCTGCATCTTTATAACGCCTCAGGTTTTGATATAACCTAACCTAGTGACATTACTAAACTCCTATTCAAACCAATCGAGAGCTCCGAAAATTTCGGCAGCATAACGACGTACATAGGACAAACCCAAAATTTTAAATCACCTGTTAAACACAAAATGTCACTTCTATATTATTTCACACTACTCCACAACTCCACAGAACAACTACAAAATAGTTTACGAGTCAAATCTCGTATATTCAACCAACAACATATTTCAATTCTTCTAATGTAAACATGCTCTTAATTTCTAAAAACAATTCAGCTTTATTAACATTAACAACCTAACGGAAGCATGAAATCTTGAACGAGCTCAACAACTAAAAGTTAATCCAACCTAGTTACGAATTTAAAGGCTCGACCTATCATCAATGAACAAATAACTTCCCTATCTATCAAAAGGAAAAATAAACAAGTGAATGGATCCATATGGTCATCCCTCGTGAACCTCGACTACTACAAAAACAGCCTTTAATGGCGGACAGAAAAAAGGGGCGAGACCTTTAATGACGGACGAAAAACTGACTTTTAATGACGGACATTGCCCGTCATTAAAAATAACCCTTAATGGCGCCGTTAAAGGCCCATTTTATTATTTTTTTTAAAATTTTTGAAAATGGTAAAAAGAAACATCACTTTTCTCTCTCCCCGAAGGCACATCCTAAACCCTAGCTTCTTCTACCTTCAACCACCGCACTCCCTTCTTCAACATTCTTCTGCAACGACTTTCGGCTGCCGCTACTTTCGTCCTCTGTTCTTCAACCGTCAGCCGCCGCAGCTATCATTCCCATCTTCTTCAACCTTCGGTCACCCCACATAGTTCTTCCCTTCTTCAACCTTTGGCCGCCGGATCTCTCCTTCCCCTTGTCTTCAACCCACGACGGCGAACAATCCTCAGCGATGATGCAAGATCTTCACCGGCGGCGACTGGACGACGACCAAAAGCATCCGACTCGAGTGCGTTTTGACCGAAGGCGTCTGGACAGCGTGGGTTTCACCTTTTTTCTCGCGTTTCGACCAAAGGCGCGTCTGGACGGCTATTGAAGGCGTTTCGACCAAAAGCATCCGACTGGAGTTGCTACTGTTTTCAGGTATGTTCTGTACAAATTTTATTACAACATATGTAGGCACCTGTGACAATTGACTCCCCATCCCCAGGCAAAAAAGAGAGTATTTATAGATATTGGTAATGAAGTTGCTACTGTCACCATTCAATTTTAGCATTCAAGTTTCAACTATATTCATTCTTCCACGCAGGACTTCACATTTACTCTGAACTGCTCTATGTCTTTTCTTTTGTTGAATCAATTTGAGGGCTACCAAGCTATCTAGAAATCTAGAAAATTCTAAAAAGGGAATTTGAAAACATAACATACAGTGTTTTCAGGATGAAAAACTCTAAGAATGTCTAATATTCATGAGATGTTTCAGTCATGCTATTTCTCCTATAAATTTTTTTAGAAAGACTGTATTTAGTCTTCTTAAAGAATTTTTTGTGTCGTTGAAGTGAGGACTTTACAAGATACCATGTGATCCCACTTCATAGCGCAATAAGGTTAACTGTATTCCCGTAATATTTGTGTTATTTTTTATTTTTTATTTTTTAGATTCTAAACCTGGAACTATGTATTCTTACAGGTGCGTCGTCGACTTCTTTCTCACGTACTAACCTTTCGTCGACTGGATAATGACTGTTTATTTCAATTGTTAGATTGTTAGATTGCATTTGTTGTTTATTTCAATTATATTGTTGTTGATTTCTTATTTGCATTTGTTGTTTACGTTTTTAGAATGAGAATTAATTTTTTTTCTATTTTTGATTCCTCTATTTATGTCTGGTTGAATCTTGGTGTTTGGATTTTTTTTTAATGATGTTCTGGTTGGAGACATTTTTGGAGAATCATAAAGATTTTCCTCTTTTTTTCCTTTGTTAAGTATTGCCTACCGCATGCTTGTTTGATGTAATTCTTTTCTAAGTAGTAGCTTGAGAGACAGGAGAAACCAACTAATAAAATTTTCAGATATGGCAATGAAAAATGAAATAAAAAAGGGTCTCTGAGTATAGATCAAGCTTGGATTAATTGGTAAGCTTCCACTGTTAATAGTAGTTTTGTTAATATTTCTTTTCTGAGTCCCCTCGACTAAGGTCTTTATTGCTTTTTCCCTTCTCTATTGGTAGGTATGGAGCACTAACAAACTTTTAAAGAATTTTGGTAATAATGTTTTCTGCCCTCTTTCAAGAAATACTACTGCACATCCAATTGCAACTAAAAAGCATATATGAAGCTACTTAATTTTGTTGTTCTTCTTTCTAGTAAAAAAAAAGTTTTGTTGTTTGTGTTAGTGTTTATAATTGGTGGAAAGTTAATTGTTATCATTCTATAATTTGATGGCTTTGTATATGATGTTTCCTTAGGTATATTCTTTCGTTGTGACTGGTAATAAAAAGTCCAAATTTGGTATTTGAAATGTAAAGTTGTAATGGTTTTTTGATGCTGTCAAGGCACATGTGTAATAATTGTGTGAGTACATGAGATATTTTAACTATTTGTGGTTGCCATTTTATGAAATTAATTATTTTCTATCTAGTTGTCTCCTGTCATATTTACTTTTATCCTAGATTATGCTTATGATCCTACCCTTTTGTTTGTTCTTTTCTTATCAAAAACTAAGATTATAGTTTTATTTTAAATTTCTTTATTGGAAATTTGGTATTGTTTTCAATTACTAGCCCTTCTCCTCTGCGACATGTATTGATCATAGTAGATCCGATCCAGATGATGGAGAACGATGCATCTGCCTTTTTCAATAT

mRNA sequence

ATGGAAGCTAGAAATCTCTCAGAAAGTAAGGGCACGGTAACCTTAGAGAGAGGGAAATTTTGGGGAATCCGAATAGAGAATCCCTTTACTTTGAAGCCCTTCTCCTCTGCGACATGTATTGATCATAGTAGATCCGATCCAGATGATGGAGAACGATGCATCTGCCTTTTTCAATAT

Coding sequence (CDS)

ATGGAAGCTAGAAATCTCTCAGAAAGTAAGGGCACGGTAACCTTAGAGAGAGGGAAATTTTGGGGAATCCGAATAGAGAATCCCTTTACTTTGAAGCCCTTCTCCTCTGCGACATGTATTGATCATAGTAGATCCGATCCAGATGATGGAGAACGATGCATCTGCCTTTTTCAATAT

Protein sequence

MEARNLSESKGTVTLERGKFWGIRIENPFTLKPFSSATCIDHSRSDPDDGERCICLFQY
Homology
[Close]
BLAST of Lcy11g015230 vs. ExPASy TrEMBL
Match: A0A6J1JY43 (uncharacterized protein LOC111490807 OS=Cucurbita maxima OX=3661 GN=LOC111490807 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MEARNLSESKGTVTLERGKFWGIRIENPFTLK 33
          MEAR +SESKGTVT ERG+F GIR+ENPFTLK
Sbjct: 1  MEARIVSESKGTVTSERGQFRGIRMENPFTLK 32

[Close]
BLAST of Lcy11g015230 vs. ExPASy TrEMBL
Match: A0A6J1E2H9 (uncharacterized protein LOC111025882 OS=Momordica charantia OX=3673 GN=LOC111025882 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 1  MEARNLSESKGTVTLERGKFWGIRIENPFTLK 33
          MEARN+ ESKGTVT ER +F GIR+ENPFTLK
Sbjct: 1  MEARNVPESKGTVTFERERFRGIRMENPFTLK 32

[Close]
BLAST of Lcy11g015230 vs. ExPASy TrEMBL
Match: A0A6J1F0D8 (uncharacterized protein LOC111438052 OS=Cucurbita moschata OX=3662 GN=LOC111438052 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 1  MEARNLSESKGTVTLERGKFWGIRIENPFTLK 33
          MEARN+SE KG VT E+G+F GIRIENPFTLK
Sbjct: 1  MEARNVSEIKGRVTSEKGQFGGIRIENPFTLK 32

[Close]
BLAST of Lcy11g015230 vs. NCBI nr
Match: XP_023521392.1 (uncharacterized protein LOC111785166 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MEARNLSESKGTVTLERGKFWGIRIENPFTLK 33
          MEAR +SESKGTVT ERG+F GIR+ENPFTLK
Sbjct: 1  MEARIVSESKGTVTSERGQFRGIRMENPFTLK 32

[Close]
BLAST of Lcy11g015230 vs. NCBI nr
Match: XP_022995187.1 (uncharacterized protein LOC111490807 [Cucurbita maxima])

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MEARNLSESKGTVTLERGKFWGIRIENPFTLK 33
          MEAR +SESKGTVT ERG+F GIR+ENPFTLK
Sbjct: 1  MEARIVSESKGTVTSERGQFRGIRMENPFTLK 32

[Close]
BLAST of Lcy11g015230 vs. NCBI nr
Match: XP_022159479.1 (uncharacterized protein LOC111025882 [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 4.1e-04
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 1  MEARNLSESKGTVTLERGKFWGIRIENPFTLK 33
          MEARN+ ESKGTVT ER +F GIR+ENPFTLK
Sbjct: 1  MEARNVPESKGTVTFERERFRGIRMENPFTLK 32

[Close]
BLAST of Lcy11g015230 vs. NCBI nr
Match: XP_022931775.1 (uncharacterized protein LOC111438052 [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 5.4e-04
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 1  MEARNLSESKGTVTLERGKFWGIRIENPFTLK 33
          MEARN+SE KG VT E+G+F GIRIENPFTLK
Sbjct: 1  MEARNVSEIKGRVTSEKGQFGGIRIENPFTLK 32

[Close]
BLAST of Lcy11g015230 vs. NCBI nr
Match: XP_023554183.1 (uncharacterized protein LOC111811523 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.9 bits (128), Expect = 5.4e-04
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 1  MEARNLSESKGTVTLERGKFWGIRIENPFTLK 33
          MEARN+SE KG VT E+G+F GIRIENPFTLK
Sbjct: 1  MEARNVSEIKGRVTSEKGQFGGIRIENPFTLK 32

The following BLAST results are available for this feature:
BLAST of Lcy11g015230 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy11g015230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JY431.5e-0481.25uncharacterized protein LOC111490807 OS=Cucurbita maxima OX=3661 GN=LOC111490807... [more]
A0A6J1E2H92.0e-0478.13uncharacterized protein LOC111025882 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1F0D82.6e-0478.13uncharacterized protein LOC111438052 OS=Cucurbita moschata OX=3662 GN=LOC1114380... [more]
BLAST of Lcy11g015230 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023521392.13.2e-0481.25uncharacterized protein LOC111785166 [Cucurbita pepo subsp. pepo][more]
XP_022995187.13.2e-0481.25uncharacterized protein LOC111490807 [Cucurbita maxima][more]
XP_022159479.14.1e-0478.13uncharacterized protein LOC111025882 [Momordica charantia][more]
XP_022931775.15.4e-0478.13uncharacterized protein LOC111438052 [Cucurbita moschata][more]
XP_023554183.15.4e-0478.13uncharacterized protein LOC111811523 [Cucurbita pepo subsp. pepo][more]
BLAST of Lcy11g015230 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g015230.1Lcy11g015230.1mRNA