Lcy11g014700 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g014700
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Glycine-rich cell wall structural protein-like
Location	Chr11: 30961556 .. 30962350 (-)
RNA-Seq Expression	Lcy11g014700
Synteny	Lcy11g014700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCCAAAACCAACTGAGTACTACGCAGTCTTTAGAAGAATATGACTTCCAAGATTCTCTTTCTTCTGCTTCTTGGTGCCTTTGTCTGCACCACTTCTGGGGCTCGCAAGCTGACTCCCTCTTTTGGAGAGGAGAAGTTCTTCCACCGTCCTAGATTTGGCGGCGGGGGATTCGGTGGTGGAGGCGGTGGAGGCTTCGGTGGAGGTGGGGGGCTAGGTGGGGGTTCTGGAGGTGGTTTTGGTGGTGGTTCGGGAGGTGGTTTTGGTGGTGGTGGCGGCGCTGGAGGAGGAGGAGGATTCGGTGGAGGAGGAGGTGGTGGACTAGGTGGAGGGAGTGGTTTTGGAGGTGGAGCTGGATTCGGAGGAGGGGCCGGTGCAGGAGGAGGAATTGGTGGTGGAGCTGGTGGTGGAGGAGGTGGAGGGTTTGGTGGCGGTGGGGGACTTGGGAGTGGAGCAGGCGGAGGGTTCGGCGGAGGTGTTGGTGGCGGAGGTGGACTTCATTGAAGGAGAGAATGTGTGTTTTTACTACAAATGAAAAAAGTGTCTAGAGACGGTATATGGATTTTGGTGTTTGTTTTCTCATGTGCAATGTGGTTTGTATTTGTTGCTTTGGTTTCTTAAATGAAAAGGTTTCATATGTGGGAGAACCCCTTTTGACCCACAATTTTCATGGTATTTATAATAATTGTAATTTCATCCAAGAAATGAAATGAAGAGAAATTATATTGGAAAATCTCAATTATTCTCTTCTCTCACACTCACAGTGCATTCGTGGAGAAAGAGAGCAAAATGTGAG

mRNA sequence

TATCCAAAACCAACTGAGTACTACGCAGTCTTTAGAAGAATATGACTTCCAAGATTCTCTTTCTTCTGCTTCTTGGTGCCTTTGTCTGCACCACTTCTGGGGCTCGCAAGCTGACTCCCTCTTTTGGAGAGGAGAAGTTCTTCCACCGTCCTAGATTTGGCGGCGGGGGATTCGGTGGTGGAGGCGGTGGAGGCTTCGGTGGAGGTGGGGGGCTAGGTGGGGGTTCTGGAGGTGGTTTTGGTGGTGGTTCGGGAGGTGGTTTTGGTGGTGGTGGCGGCGCTGGAGGAGGAGGAGGATTCGGTGGAGGAGGAGGTGGTGGACTAGGTGGAGGGAGTGGTTTTGGAGGTGGAGCTGGATTCGGAGGAGGGGCCGGTGCAGGAGGAGGAATTGGTGGTGGAGCTGGTGGTGGAGGAGGTGGAGGGTTTGGTGGCGGTGGGGGACTTGGGAGTGGAGCAGGCGGAGGGTTCGGCGGAGGTGTTGGTGGCGGAGGTGGACTTCATTGAAGGAGAGAATGTGTGTTTTTACTACAAATGAAAAAAGTGTCTAGAGACGGTATATGGATTTTGGTGTTTGTTTTCTCATGTGCAATGTGGTTTGTATTTGTTGCTTTGGTTTCTTAAATGAAAAGGTTTCATATGTGGGAGAACCCCTTTTGACCCACAATTTTCATGGTATTTATAATAATTGTAATTTCATCCAAGAAATGAAATGAAGAGAAATTATATTGGAAAATCTCAATTATTCTCTTCTCTCACACTCACAGTGCATTCGTGGAGAAAGAGAGCAAAATGTGAG

Coding sequence (CDS)

ATGACTTCCAAGATTCTCTTTCTTCTGCTTCTTGGTGCCTTTGTCTGCACCACTTCTGGGGCTCGCAAGCTGACTCCCTCTTTTGGAGAGGAGAAGTTCTTCCACCGTCCTAGATTTGGCGGCGGGGGATTCGGTGGTGGAGGCGGTGGAGGCTTCGGTGGAGGTGGGGGGCTAGGTGGGGGTTCTGGAGGTGGTTTTGGTGGTGGTTCGGGAGGTGGTTTTGGTGGTGGTGGCGGCGCTGGAGGAGGAGGAGGATTCGGTGGAGGAGGAGGTGGTGGACTAGGTGGAGGGAGTGGTTTTGGAGGTGGAGCTGGATTCGGAGGAGGGGCCGGTGCAGGAGGAGGAATTGGTGGTGGAGCTGGTGGTGGAGGAGGTGGAGGGTTTGGTGGCGGTGGGGGACTTGGGAGTGGAGCAGGCGGAGGGTTCGGCGGAGGTGTTGGTGGCGGAGGTGGACTTCATTGA

Protein sequence

MTSKILFLLLLGAFVCTTSGARKLTPSFGEEKFFHRPRFGGGGFGGGGGGGFGGGGGLGGGSGGGFGGGSGGGFGGGGGAGGGGGFGGGGGGGLGGGSGFGGGAGFGGGAGAGGGIGGGAGGGGGGGFGGGGGLGSGAGGGFGGGVGGGGGLH

Homology

[Close]

BLAST of Lcy11g014700 vs. ExPASy TrEMBL
Match: A0A5D3BB90 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002250 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.0e-16
Identity = 128/154 (83.12%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MTSKILFLLLLGAFVCTTSGARKL-TPSFGEEKFFHRPRFGGGGFGGGGGGGF--GGGGG 60
           M SKI+FL+ LGAF+ +TSGARKL T SF +EKFFHRPRFGGGG GGGGGGGF  GGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGGGFGGGGGAGGGGGFGGGGGGGLGGGSGFGGGAGFGGGAGAGGGIG 120
           LGGGSGGGFGGGSG G G GGGAGGGGGFGGGGGGG+GGGSGFGGGAGFGGG+G GGG+G
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLG 120

Query: 121 GGAGGGGGGGFGGGGGLGSGAGGGFGGGVGGGGG 152
           GGAGGGGG G GGGGGLG GAGGGFGGG G GGG
Sbjct: 121 GGAGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGG 154

[Close]

BLAST of Lcy11g014700 vs. ExPASy TrEMBL
Match: A0A5A7VJD1 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001320 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.5e-15
Identity = 128/158 (81.01%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MTSKILFLLLLGAFVCTTSGARKL-TPSFGEEKFFHRPRFGGGGFGGGGGGGF--GGGGG 60
           M SKI+FL+ LGAF+ TTSGARKL T SF +EKFFHRPR+GGGG GGGGGGGF  GGGGG
Sbjct: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGS--GGGFGGGGGAGGGGGFGGGGGGGLGGGSGFGGGAGFGGGAGAGGG 120
           LGGGSGGGFGGGS  GGG GGG G GGGGGFGGGGGGGLGGGSGFGGGAGFGGG+G GGG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120

Query: 121 IGGGAGGGGGGGF--GGGGGLGSGAGGGFGGGVGGGGG 152
           +GGG G GGGGGF  GGGGGLG GAGGGFG G G GGG
Sbjct: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGG 158

[Close]

BLAST of Lcy11g014700 vs. ExPASy TrEMBL
Match: B9SVA0 (GRP3S, putative OS=Ricinus communis OX=3988 GN=RCOM_1303490 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09
Identity = 123/166 (74.10%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 1   MTSKILFLLLLGAFVCTTSGARKLT---PSFGEEKFFHRPRF-------GGGGFGGGGGG 60
           M SK+  +LLLGAFVCT++ AR L     SF +EKFF RPR        GGGGFGGGGGG
Sbjct: 1   MASKLFLVLLLGAFVCTSTAARNLVSEKASFEDEKFFRRPRSGGGLGGGGGGGFGGGGGG 60

Query: 61  GFGGGGGLGGGSGGGFGGGSGGGFGG--GGGAGGGGGFGGGGGGGLGGGSGFGGGA--GF 120
           G GGGGG GGG+  GFGGG+GGG GG  GGGAGGGGGFGGGGGGGLGGGSGFGGGA  GF
Sbjct: 61  GLGGGGGAGGGA--GFGGGAGGGAGGGLGGGAGGGGGFGGGGGGGLGGGSGFGGGAGGGF 120

Query: 121 GGGAGAGGGIGGGAGGGGGGGFGGGGGLGSGAGGGFGGGVGGGGGL 153
           GGGAGAGGG+GGGAGGGGG G GGGGGLG GAGGGFG G G GGGL
Sbjct: 121 GGGAGAGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGAGGGLGGGL 164

[Close]

BLAST of Lcy11g014700 vs. ExPASy TrEMBL
Match: A0A6J1AP12 (glycine-rich protein 23 OS=Herrania umbratica OX=108875 GN=LOC110419504 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.5e-08
Identity = 121/160 (75.62%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 2   TSKILFLLLLGAFVCTTSGARKLTPSFGEEK-FFHRPRFGGGGFGGGGGGGFGGGGGLGG 61
           +SK+LF+L LGA VC +S ARKLT  F +EK  FHRPRF GGG GGGGGGG GGGGGLG 
Sbjct: 3   SSKLLFVLFLGALVCASSTARKLTSGFEDEKNLFHRPRF-GGGLGGGGGGGLGGGGGLGA 62

Query: 62  GSGG--GFGG--GSGGGFGGGGGAGGGGGFGGGGGGGLGGGSGFGGGA--GFGGGAGAGG 121
           G+GG  GFGG  G+GGG GGGGG GGGGG G GGGGGLGGG GFGGGA  GFGGGAGAGG
Sbjct: 63  GAGGGAGFGGGAGAGGGLGGGGGLGGGGGGGFGGGGGLGGGGGFGGGAGGGFGGGAGAGG 122

Query: 122 GIGGGAGGGGGGGFGGGGGL--GSGAGGGFGGGVGGGGGL 153
           G+GGG G GGGGGFGGGGGL  G+GAGGGFGGG G GGGL
Sbjct: 123 GLGGGGGAGGGGGFGGGGGLGGGAGAGGGFGGGAGAGGGL 161

[Close]

BLAST of Lcy11g014700 vs. ExPASy TrEMBL
Match: A0A6P5WPX9 (glycine-rich protein 23-like OS=Durio zibethinus OX=66656 GN=LOC111276582 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.9e-08
Identity = 114/153 (74.51%), Postives = 120/153 (78.43%), Query Frame = 0


Query: 3   SKILFLLLLGAFVCTTSGARKLTPSFGEEK-FFHRPRFGGGGFGGGGGGGFGGGGGLGGG 62
           SK+L +L LGA VCTTS ARKLT  F +EK   HRPRF GGG GGGGGGGFGGGGG G G
Sbjct: 4   SKLLLVLFLGAVVCTTSSARKLTEGFEDEKNLLHRPRF-GGGLGGGGGGGFGGGGGGGLG 63

Query: 63  SGGGFGGGSGGGFGGGG--GAGGGGGFGGGGGGGLGGGSGFGGGAGFGGGAGAGGGIGGG 122
            G GFGGG+GGG GGGG  G GGGGGFGGGGGGGLGGG+GFGGGA    G G GGG+GGG
Sbjct: 64  GGAGFGGGAGGGVGGGGGLGGGGGGGFGGGGGGGLGGGAGFGGGA----GGGFGGGLGGG 123

Query: 123 AGGGGGGGFGGGGGLGSGAGGGFGGGVGGGGGL 153
            G GGGGGFGGGGG G G GGGFGGG G GGGL
Sbjct: 124 GGAGGGGGFGGGGGAGGGVGGGFGGGAGAGGGL 151

[Close]

BLAST of Lcy11g014700 vs. NCBI nr
Match: KAA0065824.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96563.1 glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-16
Identity = 128/154 (83.12%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MTSKILFLLLLGAFVCTTSGARKL-TPSFGEEKFFHRPRFGGGGFGGGGGGGF--GGGGG 60
           M SKI+FL+ LGAF+ +TSGARKL T SF +EKFFHRPRFGGGG GGGGGGGF  GGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGGGFGGGGGAGGGGGFGGGGGGGLGGGSGFGGGAGFGGGAGAGGGIG 120
           LGGGSGGGFGGGSG G G GGGAGGGGGFGGGGGGG+GGGSGFGGGAGFGGG+G GGG+G
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLG 120

Query: 121 GGAGGGGGGGFGGGGGLGSGAGGGFGGGVGGGGG 152
           GGAGGGGG G GGGGGLG GAGGGFGGG G GGG
Sbjct: 121 GGAGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGG 154

[Close]

BLAST of Lcy11g014700 vs. NCBI nr
Match: KAA0065825.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-14
Identity = 128/158 (81.01%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MTSKILFLLLLGAFVCTTSGARKL-TPSFGEEKFFHRPRFGGGGFGGGGGGGF--GGGGG 60
           M SKI+FL+ LGAF+ TTSGARKL T SF +EKFFHRPR+GGGG GGGGGGGF  GGGGG
Sbjct: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGS--GGGFGGGGGAGGGGGFGGGGGGGLGGGSGFGGGAGFGGGAGAGGG 120
           LGGGSGGGFGGGS  GGG GGG G GGGGGFGGGGGGGLGGGSGFGGGAGFGGG+G GGG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120

Query: 121 IGGGAGGGGGGGF--GGGGGLGSGAGGGFGGGVGGGGG 152
           +GGG G GGGGGF  GGGGGLG GAGGGFG G G GGG
Sbjct: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGG 158

[Close]

BLAST of Lcy11g014700 vs. NCBI nr
Match: XP_011650511.1 (glycine-rich cell wall structural protein-like [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-13
Identity = 127/156 (81.41%), Postives = 133/156 (85.26%), Query Frame = 0


Query: 1   MTSKILFLLLLGAFVCTTSGARKL-TPSFGEEKFFHRPRFGGGGFGGGGGGGF--GGGGG 60
           M SKI+FL+ LGAF+ +TSGARKL T SF +EKFF RPRFGGGG GGGGGGGF  GGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGS--GGGFGGGGGAGGGGGFGGGGGGGLGGGSGFGGGAGFGGGAGAGGG 120
           LGGGSGGGFGGGS  GGG GGG G GGGGGFGGGGGGGLGGGSGFGGGAGFGGG+G G G
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGLG 120

Query: 121 IGGGAGGGGGGGFGGGGGLGSGAGGGFGGGVGGGGG 152
            GGGAGGGGG G GGGGGLG GAGGGFGGG G GGG
Sbjct: 121 GGGGAGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGG 156

[Close]

BLAST of Lcy11g014700 vs. NCBI nr
Match: XP_002529919.2 (glycine-rich protein 5 [Ricinus communis])

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-09
Identity = 123/166 (74.10%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 1   MTSKILFLLLLGAFVCTTSGARKLT---PSFGEEKFFHRPRF-------GGGGFGGGGGG 60
           M SK+  +LLLGAFVCT++ AR L     SF +EKFF RPR        GGGGFGGGGGG
Sbjct: 4   MASKLFLVLLLGAFVCTSTAARNLVSEKASFEDEKFFRRPRSGGGLGGGGGGGFGGGGGG 63

Query: 61  GFGGGGGLGGGSGGGFGGGSGGGFGG--GGGAGGGGGFGGGGGGGLGGGSGFGGGA--GF 120
           G GGGGG GGG+  GFGGG+GGG GG  GGGAGGGGGFGGGGGGGLGGGSGFGGGA  GF
Sbjct: 64  GLGGGGGAGGGA--GFGGGAGGGAGGGLGGGAGGGGGFGGGGGGGLGGGSGFGGGAGGGF 123

Query: 121 GGGAGAGGGIGGGAGGGGGGGFGGGGGLGSGAGGGFGGGVGGGGGL 153
           GGGAGAGGG+GGGAGGGGG G GGGGGLG GAGGGFG G G GGGL
Sbjct: 124 GGGAGAGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGAGGGLGGGL 167

[Close]

BLAST of Lcy11g014700 vs. NCBI nr
Match: EEF32473.1 (GRP3S, putative [Ricinus communis])

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-09
Identity = 123/166 (74.10%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 1   MTSKILFLLLLGAFVCTTSGARKLT---PSFGEEKFFHRPRF-------GGGGFGGGGGG 60
           M SK+  +LLLGAFVCT++ AR L     SF +EKFF RPR        GGGGFGGGGGG
Sbjct: 1   MASKLFLVLLLGAFVCTSTAARNLVSEKASFEDEKFFRRPRSGGGLGGGGGGGFGGGGGG 60

Query: 61  GFGGGGGLGGGSGGGFGGGSGGGFGG--GGGAGGGGGFGGGGGGGLGGGSGFGGGA--GF 120
           G GGGGG GGG+  GFGGG+GGG GG  GGGAGGGGGFGGGGGGGLGGGSGFGGGA  GF
Sbjct: 61  GLGGGGGAGGGA--GFGGGAGGGAGGGLGGGAGGGGGFGGGGGGGLGGGSGFGGGAGGGF 120

Query: 121 GGGAGAGGGIGGGAGGGGGGGFGGGGGLGSGAGGGFGGGVGGGGGL 153
           GGGAGAGGG+GGGAGGGGG G GGGGGLG GAGGGFG G G GGGL
Sbjct: 121 GGGAGAGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGAGGGLGGGL 164

The following BLAST results are available for this feature:

BLAST of Lcy11g014700 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g014700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BB90	2.0e-16	83.12	Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5A7VJD1	6.5e-15	81.01	Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11...	[more]
B9SVA0	4.1e-09	74.10	GRP3S, putative OS=Ricinus communis OX=3988 GN=RCOM_1303490 PE=4 SV=1	[more]
A0A6J1AP12	4.5e-08	75.63	glycine-rich protein 23 OS=Herrania umbratica OX=108875 GN=LOC110419504 PE=4 SV=...	[more]
A0A6P5WPX9	5.9e-08	74.51	glycine-rich protein 23-like OS=Durio zibethinus OX=66656 GN=LOC111276582 PE=4 S...	[more]

BLAST of Lcy11g014700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065824.1	4.2e-16	83.12	glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96...	[more]
KAA0065825.1	1.4e-14	81.01	glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa]	[more]
XP_011650511.1	3.3e-13	81.41	glycine-rich cell wall structural protein-like [Cucumis sativus]	[more]
XP_002529919.2	8.5e-09	74.10	glycine-rich protein 5 [Ricinus communis]	[more]
EEF32473.1	8.5e-09	74.10	GRP3S, putative [Ricinus communis]	[more]

BLAST of Lcy11g014700 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 3..19 score: 31.62 coord: 116..126 score: 39.77 coord: 140..153 score: 40.79 coord: 88..103 score: 54.69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g014700.1	Lcy11g014700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0016746	acyltransferase activity