Lcy11g014680 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g014680
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribonuclease H
Location	Chr11: 30898964 .. 30901203 (+)
RNA-Seq Expression	Lcy11g014680
Synteny	Lcy11g014680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACGTGGAGGTCACGAGAAGAAATTCGGGGTTGGCCTCGGTTTCCTCGGCCACAGTCTCCTTGACCTTCATCCCGAGCGAGGCAGACCGATGTCAAAATTGCCACCCTTGAGGATAAGGTGAGTGGAATAGATTGGAGTTTTTCCAGGATACTTCACACCAAAATCCATGAGGAGGGGTTGATTAGAGATTCGAGGAAGGGGAAGAAGCCAATCGAGTACGTTGAAGAGTTGGAGACAGGATCGAAGGAAAAGAAGACTAACAGCGTGACCAGCAGGGTCAAGGGGCAAAAGTCTACAAATCGTACAATATTGAGAAACCCAGAACCAAACACGTATAAGGAACACGACCACACTGTTTCAACACCAAGTATCAGCCGCACAATAGGAGCAGACCTGAGGAAGAAAAATGCAGAATGGCCAAGGCTGCGGAGGTAGAGGCCAAAGCTGCCGAGGCTAGAGCAGCCAAGGTCGAGGCCAAGAATGATAATCTCCCTTGGAAGACTGAGCTTCTAAACACCTTGAAGGAGTTTGGGAATTTCCAAGGGGATCTGCACAAATCGAAAGATTTTGAAGGACAAGACTTGCAAGCCCTGATCGACCAGGTTGATCCGCCCTTCACTGATGAAGTCATGAAAGTTGAGGTTCCCCCGAAATTAAAGGTACCCACATTCAAGCAGTATGATGGCAAAAAAGATCTCGTGCAGCATCTACATACCTACAGGACATGGATGAACTTCCACGGCGTTTCAGACGCAATCAGGTGTCATGCCTTATCTTTCACTTTAACAGGGTCAGCAAAGCAATGGTTTCAGAGGTTGCGAAGGAGGTCCATTAGTTCCTTGAAGGAACTAGCCCGAGCATTCATCTCACAGTTCATGGGAGCCAGAGAACAACGCAAGCCTCACATTAATCTCCTAACTGTCAAGCAACAGATAGGTGAGAGTTTGCGTGATTACATGACATGTTTTAATGAAGAAGCACTTCAGGTTGAAGGATATAGCGATGGAACAGCCTTGATAGCCATAATAGTGGGACTGGAAAATGAGAGACGCTTAATTCGATAGGTAAGAGTCAACCTCGAACCTATGGTGAGTTTGTTTCCAAGGCAAAGAAGTACATGAGCGTAGAGGAGTTGTTGAAATCAAGGAGGTCAGAACGAGAGCACAAGAGGCATTCTTCATTCAACTAGGACAGGGAAAAGGACAAAAAACAGTGGACAGACGATGGTGGTCGAGTCCAAGCCGACCATGACCATAGTCGAGGTCGAGCTGACCATGACCATGGCAAAGGCCGAGCACATTCCTTTGGTAAGTTTGAGAAATATATGCCAACTACTATTCCACAGGAGCAAGTTCTGATGGAGATTCGAAACACGGGTCTTCTTAAATTCCCGAGGAGGATGAAGTCAAATTCTGATAGAAGAGACAAGAGCTAGTACTGTCTTTTCCATCAAGATCATGGACATTCAACCAGAAATTGTATTCTGTTGAAGGATGAAATCAAAGCACAAATCCATAATTGATATCTGAAGGAGTTCGTTGCCGAAACTGGAGCTGAGGCTGAGGCCGACCAGAGATGGCCGAAGTCGAGGCTGACCAAAGATGGCCGAGACAAAGAAGAACCCCCACGAGAGATCAGAACCATCTTTGGAGGACCTGCTGGAGGAGGTTCAAGTAGGAAAAGAAAAGCTATTGCCAGGGAAGCAAGGTTCGAACCAGAATACCAAGGTATGTACTTTGTCCATCTAACAAAGGCACACCCCCCTTTGGAGTTCACTAGGGCTGAGGCAACAAGCATCCATCAGCCACATAATGATGCTTTGGTGGTCACTTTAATGGTAGCCAATGTGAAAATCCATCGGATTCTAATCGATGGAGGAAGTTCGACTGATGTCCTTTCTCTAACAGCCTTTGATTTTAAGCACAACTCTTAAAATCAAGCCTTACCCCCCTTTTAGGGTTTGGAGGAGAATGGGTGACACCAGAGGGTAGCATAGAACTTCCTATCACCTTTGGGGATGGACAGAATACAGTGACGAAGATAGTAAACTTCTTAGTCGTGGATTTCATTTCAGCCTACAATGCAATCTTGGGAAGGCCGACCTTGCATGATATGAAGGTCATAGCTTCAACTTATCATCAGTTGTTGAAGTTTCCAACTCAGAATGGTGTGAGAGTCATCAAAGGGGAACAAATGGCATCGAGGGAGTGTTACTGGATAGAGTTAAGCCACTGA

mRNA sequence

ATGACACGTGGAGGTCACGAGAAGAAATTCGGGGTTGGCCTCGGTTTCCTCGGCCACAGTCTCCTTGACCTTCATCCCGAGCGAGGCAGACCGATGTCAAAATTGCCACCCTTGAGGATAAGGACAGGGAAAAGGACAAAAAACAGTGGACAGACGATGGTGGTCGAGTCCAAGCCGACCATGACCATAGTCGAGGTCGAGCTGACCATGACCATGGCAAAGGCCGAGCACATTCCTTTGGAGTTCGTTGCCGAAACTGGAGCTGAGGCTGAGGCCGACCAGAGATGGCCGAAGTCGAGGCTGACCAAAGATGGCCGAGACAAAGAAGAACCCCCACGAGAGATCAGAACCATCTTTGGAGGACCTGCTGGAGGAGGTTCAAGTAGGAAAAGAAAAGCTATTGCCAGGGAAGCAAGGTTCGAACCAGAATACCAAGGGTTTGGAGGAGAATGGGTGACACCAGAGGGTAGCATAGAACTTCCTATCACCTTTGGGGATGGACAGAATACAGTGACGAAGATAGTAAACTTCTTAGTCGTGGATTTCATTTCAGCCTACAATGCAATCTTGGGAAGGCCGACCTTGCATGATATGAAGGTCATAGCTTCAACTTATCATCAGTTGTTGAAGTTTCCAACTCAGAATGGTGTGAGAGTCATCAAAGGGGAACAAATGGCATCGAGGGAGTGTTACTGGATAGAGTTAAGCCACTGA

Coding sequence (CDS)

ATGACACGTGGAGGTCACGAGAAGAAATTCGGGGTTGGCCTCGGTTTCCTCGGCCACAGTCTCCTTGACCTTCATCCCGAGCGAGGCAGACCGATGTCAAAATTGCCACCCTTGAGGATAAGGACAGGGAAAAGGACAAAAAACAGTGGACAGACGATGGTGGTCGAGTCCAAGCCGACCATGACCATAGTCGAGGTCGAGCTGACCATGACCATGGCAAAGGCCGAGCACATTCCTTTGGAGTTCGTTGCCGAAACTGGAGCTGAGGCTGAGGCCGACCAGAGATGGCCGAAGTCGAGGCTGACCAAAGATGGCCGAGACAAAGAAGAACCCCCACGAGAGATCAGAACCATCTTTGGAGGACCTGCTGGAGGAGGTTCAAGTAGGAAAAGAAAAGCTATTGCCAGGGAAGCAAGGTTCGAACCAGAATACCAAGGGTTTGGAGGAGAATGGGTGACACCAGAGGGTAGCATAGAACTTCCTATCACCTTTGGGGATGGACAGAATACAGTGACGAAGATAGTAAACTTCTTAGTCGTGGATTTCATTTCAGCCTACAATGCAATCTTGGGAAGGCCGACCTTGCATGATATGAAGGTCATAGCTTCAACTTATCATCAGTTGTTGAAGTTTCCAACTCAGAATGGTGTGAGAGTCATCAAAGGGGAACAAATGGCATCGAGGGAGTGTTACTGGATAGAGTTAAGCCACTGA

Protein sequence

MTRGGHEKKFGVGLGFLGHSLLDLHPERGRPMSKLPPLRIRTGKRTKNSGQTMVVESKPTMTIVEVELTMTMAKAEHIPLEFVAETGAEAEADQRWPKSRLTKDGRDKEEPPREIRTIFGGPAGGGSSRKRKAIAREARFEPEYQGFGGEWVTPEGSIELPITFGDGQNTVTKIVNFLVVDFISAYNAILGRPTLHDMKVIASTYHQLLKFPTQNGVRVIKGEQMASRECYWIELSH

Homology

[Close]

BLAST of Lcy11g014680 vs. ExPASy TrEMBL
Match: A0A6J1CTS4 (uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014147 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.2e-29
Identity = 79/180 (43.89%), Postives = 96/180 (53.33%), Query Frame = 0


Query: 100 RLTKDGRDKEEPPREIRTIFGGPAGGGSSRKRKAIAREARFEPEYQ-------------- 159
           + T++G   + P REIRTI GGP    S RKRKA  REAR   E                
Sbjct: 65  KATQNGESDKSPAREIRTIMGGPIERESGRKRKADVREARTGREQNEIANVKVHRVLVDG 124

Query: 160 ------------------------------GFGGEWVTPEGSIELPITFGDGQNTVTKIV 219
                                         GFGGE V PEG IE P+TFG G  +VTK+V
Sbjct: 125 GSLADILSWTAYKAMDLGEKVLKSSPAPLVGFGGERVIPEGRIEXPVTFGSGPKSVTKMV 184

Query: 220 NFLVVDFISAYNAILGRPTLHDMKVIASTYHQLLKFPTQNGVRVIKGEQMASRECYWIEL 236
           + LVV++ S+YNAILGRPT+H ++ I STYHQ +KFPT  GV  IKGEQ  SRECY+  +
Sbjct: 185 DXLVVNYTSSYNAILGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSM 244

[Close]

BLAST of Lcy11g014680 vs. ExPASy TrEMBL
Match: A0A6J1DAK4 (uncharacterized protein LOC111018902 OS=Momordica charantia OX=3673 GN=LOC111018902 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.4e-26
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 146 GFGGEWVTPEGSIELPITFGDGQNTVTKIVNFLVVDFISAYNAILGRPTLHDMKVIASTY 205
           GFGGEWV PEG IELP+TFG G  ++TK+V+FLVVD+ S+ NAILGRPT+H +K I S Y
Sbjct: 165 GFGGEWVIPEGRIELPVTFGSGPKSITKMVDFLVVDYASSCNAILGRPTMHMLKAIPSRY 224

Query: 206 HQLLKFPTQNGVRVIKGEQMASRECYWIEL 236
           HQ +KFPT  G+  IKGEQ  SRECY+  +
Sbjct: 225 HQSIKFPTPGGIGEIKGEQRVSRECYYASM 254

[Close]

BLAST of Lcy11g014680 vs. ExPASy TrEMBL
Match: A0A2N9IPM7 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53971 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.3e-25
Identity = 72/158 (45.57%), Postives = 97/158 (61.39%), Query Frame = 0


Query: 95  RWPKSRLTKDGRDKEE-------PPREIRTIFGGPAGGGSSRK-RKAIAREARFEP---- 154
           RWP +   K    KE+       P  EIRTI GGPA GG+SR  RKA AR+   +P    
Sbjct: 393 RWPGTCPMKPPTPKEQIENNRLGPFGEIRTIIGGPAFGGTSRALRKAYARQGTHQPHDDA 452

Query: 155 -----EYQGFGGEWVTPEGSIELPITFGDGQNTVTKIVNFLVVDFISAYNAILGRPTLHD 214
                   GF G  V   G I LPIT G    TV+K ++FLVV+  SAYNAI+G+PTL+ 
Sbjct: 453 LIVTINIAGFTGNSVCLVGIITLPITVGTYLKTVSKTIDFLVVNCPSAYNAIIGQPTLNR 512

Query: 215 MKVIASTYHQLLKFPTQNGVRVIKGEQMASRECYWIEL 236
           ++V+ STYH L+KFPT++G+  ++G+Q+A++ECY   L
Sbjct: 513 LRVVTSTYHLLIKFPTEHGIGEVRGDQIAAKECYLASL 550

[Close]

BLAST of Lcy11g014680 vs. ExPASy TrEMBL
Match: A0A2N9INM8 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53847 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-24
Identity = 68/149 (45.64%), Postives = 94/149 (63.09%), Query Frame = 0


Query: 97  PKSRLTKDGRDKEEPPREIRTIFGGPAGGGSSR-KRKAIAREAR---------FEPEYQG 156
           P ++  +   ++  P  EI TI GGPA GG+SR  RKA AR+            +    G
Sbjct: 447 PPAQKEQTEHNRPGPVGEIGTIVGGPASGGTSRASRKAYARQQMRLDKDKLRPMDALLVG 506

Query: 157 FGGEWVTPEGSIELPITFGDGQNTVTKIVNFLVVDFISAYNAILGRPTLHDMKVIASTYH 216
           F G+ V P G + LPIT G    TV+K V+FLVV+  SAYNAI+GRPTL+ ++ + STYH
Sbjct: 507 FTGDKVYPIGIVTLPITVGTHPKTVSKTVDFLVVNCPSAYNAIIGRPTLNRLRAVTSTYH 566

Query: 217 QLLKFPTQNGVRVIKGEQMASRECYWIEL 236
            LLKFPT++G+  ++G+Q+A+RECY   L
Sbjct: 567 LLLKFPTEHGIGEVRGDQVAARECYLASL 595

[Close]

BLAST of Lcy11g014680 vs. ExPASy TrEMBL
Match: A0A6J1DQY2 (uncharacterized protein LOC111022321 OS=Momordica charantia OX=3673 GN=LOC111022321 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.4e-24
Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 146 GFGGEWVTPEGSIELPITFGDGQNTVTKIVNFLVVDFISAYNAILGRPTLHDMKVIASTY 205
           GFGGE V  EG IELP+TFG G  +VTK+V+FLVV++ S+YNAILGRPT+H +K I STY
Sbjct: 108 GFGGERVILEGRIELPVTFGSGPKSVTKMVDFLVVNYTSSYNAILGRPTMHMLKAIPSTY 167

Query: 206 HQLLKFPTQNGVRVIKGEQMASRECY 232
           HQ  KFPT  GV  IKGEQ  SRECY
Sbjct: 168 HQSXKFPTXGGVGEIKGEQRVSRECY 193

[Close]

BLAST of Lcy11g014680 vs. NCBI nr
Match: XP_022144467.1 (uncharacterized protein LOC111014147 [Momordica charantia])

HSP 1 Score: 138.7 bits (348), Expect = 6.7e-29
Identity = 79/180 (43.89%), Postives = 96/180 (53.33%), Query Frame = 0


Query: 100 RLTKDGRDKEEPPREIRTIFGGPAGGGSSRKRKAIAREARFEPEYQ-------------- 159
           + T++G   + P REIRTI GGP    S RKRKA  REAR   E                
Sbjct: 65  KATQNGESDKSPAREIRTIMGGPIERESGRKRKADVREARTGREQNEIANVKVHRVLVDG 124

Query: 160 ------------------------------GFGGEWVTPEGSIELPITFGDGQNTVTKIV 219
                                         GFGGE V PEG IE P+TFG G  +VTK+V
Sbjct: 125 GSLADILSWTAYKAMDLGEKVLKSSPAPLVGFGGERVIPEGRIEXPVTFGSGPKSVTKMV 184

Query: 220 NFLVVDFISAYNAILGRPTLHDMKVIASTYHQLLKFPTQNGVRVIKGEQMASRECYWIEL 236
           + LVV++ S+YNAILGRPT+H ++ I STYHQ +KFPT  GV  IKGEQ  SRECY+  +
Sbjct: 185 DXLVVNYTSSYNAILGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSM 244

[Close]

BLAST of Lcy11g014680 vs. NCBI nr
Match: XP_022150858.1 (uncharacterized protein LOC111018902 [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 6.9e-26
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 146 GFGGEWVTPEGSIELPITFGDGQNTVTKIVNFLVVDFISAYNAILGRPTLHDMKVIASTY 205
           GFGGEWV PEG IELP+TFG G  ++TK+V+FLVVD+ S+ NAILGRPT+H +K I S Y
Sbjct: 165 GFGGEWVIPEGRIELPVTFGSGPKSITKMVDFLVVDYASSCNAILGRPTMHMLKAIPSRY 224

Query: 206 HQLLKFPTQNGVRVIKGEQMASRECYWIEL 236
           HQ +KFPT  G+  IKGEQ  SRECY+  +
Sbjct: 225 HQSIKFPTPGGIGEIKGEQRVSRECYYASM 254

[Close]

BLAST of Lcy11g014680 vs. NCBI nr
Match: XP_022155186.1 (uncharacterized protein LOC111022321 [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-23
Identity = 58/86 (67.44%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 146 GFGGEWVTPEGSIELPITFGDGQNTVTKIVNFLVVDFISAYNAILGRPTLHDMKVIASTY 205
           GFGGE V  EG IELP+TFG G  +VTK+V+FLVV++ S+YNAILGRPT+H +K I STY
Sbjct: 108 GFGGERVILEGRIELPVTFGSGPKSVTKMVDFLVVNYTSSYNAILGRPTMHMLKAIPSTY 167

Query: 206 HQLLKFPTQNGVRVIKGEQMASRECY 232
           HQ  KFPT  GV  IKGEQ  SRECY
Sbjct: 168 HQSXKFPTXGGVGEIKGEQRVSRECY 193

[Close]

BLAST of Lcy11g014680 vs. NCBI nr
Match: XP_022156748.1 (uncharacterized protein LOC111023587 [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 3.2e-23
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 146 GFGGEWVTPEGSIELPITFGDGQNTVTKIVNFLVVDFISAYNAILGRPTLHDMKVIASTY 205
           GFGGE V  EG IELP+TFG G   VTK+V+FLVV++ S+YN ILGR T+H +KVI STY
Sbjct: 174 GFGGERVISEGRIELPVTFGSGPKGVTKMVDFLVVNYTSSYNEILGRLTMHMLKVIPSTY 233

Query: 206 HQLLKFPTQNGVRVIKGEQMASRECYWIEL 236
           HQ +KFPT  GV  IKGEQ  SRECY+  +
Sbjct: 234 HQSMKFPTPGGVXEIKGEQRVSRECYYTSM 263

[Close]

BLAST of Lcy11g014680 vs. NCBI nr
Match: XP_022158687.1 (uncharacterized protein LOC111025147 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 4.2e-23
Identity = 56/90 (62.22%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 146 GFGGEWVTPEGSIELPITFGDGQNTVTKIVNFLVVDFISAYNAILGRPTLHDMKVIASTY 205
           GFG E V PEG IEL +TFG G  +VTK+++FLVVD+ S+YNAILGR T+H +K I STY
Sbjct: 108 GFGRERVIPEGRIELHVTFGSGPKSVTKMMDFLVVDYTSSYNAILGRSTMHMLKAIPSTY 167

Query: 206 HQLLKFPTQNGVRVIKGEQMASRECYWIEL 236
           HQ +KFPT  GV  IKGEQ  SRECY+  +
Sbjct: 168 HQSMKFPTSGGVGKIKGEQRVSRECYYTSM 197

The following BLAST results are available for this feature:

BLAST of Lcy11g014680 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g014680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTS4	3.2e-29	43.89	uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1DAK4	3.4e-26	63.33	uncharacterized protein LOC111018902 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A2N9IPM7	8.3e-25	45.57	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9INM8	2.4e-24	45.64	Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53847 PE=4 SV=1	[more]
A0A6J1DQY2	5.4e-24	67.44	uncharacterized protein LOC111022321 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Lcy11g014680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144467.1	6.7e-29	43.89	uncharacterized protein LOC111014147 [Momordica charantia]	[more]
XP_022150858.1	6.9e-26	63.33	uncharacterized protein LOC111018902 [Momordica charantia]	[more]
XP_022155186.1	1.1e-23	67.44	uncharacterized protein LOC111022321 [Momordica charantia]	[more]
XP_022156748.1	3.2e-23	63.33	uncharacterized protein LOC111023587 [Momordica charantia]	[more]
XP_022158687.1	4.2e-23	62.22	uncharacterized protein LOC111025147 [Momordica charantia]	[more]

BLAST of Lcy11g014680 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..52
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 145..196 e-value: 2.40131E-6 score: 42.7088

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g014680.1	Lcy11g014680.1	mRNA