Lcy11g014320 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g014320
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr11: 28215313 .. 28215855 (+)
RNA-Seq Expression	Lcy11g014320
Synteny	Lcy11g014320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCTCTGGAGGCGGACGAGGAGCGGTGCGGAGGGAGGTGAGGTGGATCCCCCCCAGTGACTGGCTGGTATAAAGTTAATGTAGATGCAGCATTCTGCGAGGAGGAATTTCGGGCAGGTCTGGGGATAATTGTTAGGGATTCAGCGGGTCAGGTAATGCTTTCTACATCAGTGATTCACGGAAATATCAGAAATGTGGATATGGCTGAGGGATCGGCGGGTTTCGAGGGGATGAGGATGGTTATGGATATGGGGCTTCTGTCGGCGATGTTGGAGACGGATTCCAGTCGCATTGCATCATTAATCCAGAATGGACGGGAGATGGTGGATTTATCTGATGTAGGTGAGCTGATGGCTGAGCTACGTAGGAAAGTTCCTGACCCCCCATTGTTCGACTGCAGTTTCGTTCGGAGGGAGGGGAATGAGGTTGCCCACCAGTTGGCACGAATGGCACTTAGGGAGGGACGATCTGGTGTCTGGATGGAGACTGTTCCTTCATGTTTAAACCCTTTGATTACTGAGGAATGCCCCATGTCATGA

mRNA sequence

ATGGTGGCTCTGGAGGCGGACGAGGAGCGGTGCGGAGGGAGAAATGTGGATATGGCTGAGGGATCGGCGGGTTTCGAGGGGATGAGGATGGTTATGGATATGGGGCTTCTGTCGGCGATGTTGGAGACGGATTCCAGTCGCATTGCATCATTAATCCAGAATGGACGGGAGATGGTGGATTTATCTGATGTAGGTGAGCTGATGGCTGAGCTACGTAGGAAAGTTCCTGACCCCCCATTGTTCGACTGCAGTTTCGTTCGGAGGGAGGGGAATGAGGTTGCCCACCAGTTGGCACGAATGGCACTTAGGGAGGGACGATCTGGTGTCTGGATGGAGACTGTTCCTTCATGTTTAAACCCTTTGATTACTGAGGAATGCCCCATGTCATGA

Coding sequence (CDS)

ATGGTGGCTCTGGAGGCGGACGAGGAGCGGTGCGGAGGGAGAAATGTGGATATGGCTGAGGGATCGGCGGGTTTCGAGGGGATGAGGATGGTTATGGATATGGGGCTTCTGTCGGCGATGTTGGAGACGGATTCCAGTCGCATTGCATCATTAATCCAGAATGGACGGGAGATGGTGGATTTATCTGATGTAGGTGAGCTGATGGCTGAGCTACGTAGGAAAGTTCCTGACCCCCCATTGTTCGACTGCAGTTTCGTTCGGAGGGAGGGGAATGAGGTTGCCCACCAGTTGGCACGAATGGCACTTAGGGAGGGACGATCTGGTGTCTGGATGGAGACTGTTCCTTCATGTTTAAACCCTTTGATTACTGAGGAATGCCCCATGTCATGA

Protein sequence

MVALEADEERCGGRNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRRKVPDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEECPMS

Homology

[Close]

BLAST of Lcy11g014320 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.0e-10
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 14  RNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRR 73
           ++VDMAE     EG+++   +G+   +LETDSSRI +L     E  DLS+ GE++ + + 
Sbjct: 82  QSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSE--DLSETGEIVLKAKN 141

Query: 74  KVPDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEEC 127
                     +FV+REGN+ AH LAR AL      +WME  P  L   +  EC
Sbjct: 142 FWTQSLHASFNFVKREGNKAAHMLARRALLLREFSIWMEDWPLELKSCLEMEC 192

[Close]

BLAST of Lcy11g014320 vs. ExPASy TrEMBL
Match: V4UMR3 (RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10027161mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.5e-07
Identity = 35/104 (33.65%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 14  RNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRR 73
           R+++  E  A   G+++VMD+GL  A++E+DS  + +LI N  ++    +VG L+++++ 
Sbjct: 51  RDIEFVEAVAVHNGLQLVMDIGLAPAIIESDSFNVVNLINN--KIHSRCEVGWLISDVQE 110

Query: 74  KV-PDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPS 117
            +      F   F  R  NEVAH L+++AL      VW+E VP+
Sbjct: 111 VLSSSESSFQVKFAPRSCNEVAHHLSKLALCNSMEKVWLEEVPT 152

[Close]

BLAST of Lcy11g014320 vs. ExPASy TrEMBL
Match: A0A2K3JLL1 (Replication protein A 70 kDa DNA-binding subunit OS=Trifolium pratense OX=57577 GN=L195_g048549 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.7e-06
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 0


Query: 20  EGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRRKVPDPP 79
           E  A  E M+ V D G+  A+ ETDS  +   I N R     S+   L+ +++  +   P
Sbjct: 223 EALALLEAMKAVKDRGITHAIFETDSKNVVDAIHNLRG--GTSEFSSLICDIKNVMMFNP 282

Query: 80  LFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEE 126
            F   F++R+ N VAH LAR A+    S    ET+P C+ PL+  E
Sbjct: 283 NFVVKFIKRQANMVAHXLARAAI-SWSSRYICETLPPCITPLLNNE 325

[Close]

BLAST of Lcy11g014320 vs. ExPASy TrEMBL
Match: A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.1e-06
Identity = 36/113 (31.86%), Postives = 61/113 (53.98%), Query Frame = 0


Query: 15  NVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRRK 74
           +VD  EG A +EG+ + ++ G +   +ETDS RI +L+    + VD S+VG L + ++  
Sbjct: 153 DVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTT--DCVDDSEVGVLCSVIKLF 212

Query: 75  VPD-PPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEEC 127
           +         SF  R GN  AH LA++AL      +W+E  P  ++ ++  +C
Sbjct: 213 LSSHAERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVDC 263

[Close]

BLAST of Lcy11g014320 vs. ExPASy TrEMBL
Match: A0A2N9G928 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23741 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-05
Identity = 36/115 (31.30%), Postives = 57/115 (49.57%), Query Frame = 0


Query: 14  RNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRR 73
           ++V+  E  A    M+ V ++G+  A  E DS+ I + + N      L+  G L+ + + 
Sbjct: 280 QSVECIEAWAAKRAMKFVTEIGITEAEFEGDSTTIVAALNN--HSSGLTPYGHLITDAKT 339

Query: 74  KVPDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEECPM 129
                  +  + V+R+GN +AH LARMAL      VWME VPS    L   + P+
Sbjct: 340 LANGLKSYCFTHVKRQGNGLAHALARMALHSNNLEVWMEDVPSPTKQLYLSDFPV 392

[Close]

BLAST of Lcy11g014320 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 14  RNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRR 73
           ++VDMAE     EG+++   +G+   +LETDSSRI +L     E  DLS+ GE++ + + 
Sbjct: 82  QSVDMAEAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSE--DLSETGEIVLKAKN 141

Query: 74  KVPDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEEC 127
                     +FV+REGN+ AH LAR AL      +WME  P  L   +  EC
Sbjct: 142 FWTQSLHASFNFVKREGNKAAHMLARRALLLREFSIWMEDWPLELKSCLEMEC 192

[Close]

BLAST of Lcy11g014320 vs. NCBI nr
Match: CAB3462371.1 (unnamed protein product, partial [Digitaria exilis])

HSP 1 Score: 67.8 bits (164), Expect = 7.9e-08
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 15  NVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRRK 74
           + +  E  A  EGMR+V + G  S +LETDSS +AS++   RE    S +  ++ E+   
Sbjct: 41  SAEEVEALACKEGMRLVAEWGQQSTILETDSSSVASMLSK-RER-SRSYLKFILEEVMES 100

Query: 75  VPDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLITEEC 127
               P +     RRE N VAH+LA++A R   S VW   +P C+  LI ++C
Sbjct: 101 AVRLPQWKVVHKRRESNRVAHELAQLAKRTKHSAVWRFAIPVCVEHLIAQDC 150

[Close]

BLAST of Lcy11g014320 vs. NCBI nr
Match: ESR40694.1 (hypothetical protein CICLE_v10027161mg, partial [Citrus clementina])

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-06
Identity = 35/104 (33.65%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 14  RNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRR 73
           R+++  E  A   G+++VMD+GL  A++E+DS  + +LI N  ++    +VG L+++++ 
Sbjct: 51  RDIEFVEAVAVHNGLQLVMDIGLAPAIIESDSFNVVNLINN--KIHSRCEVGWLISDVQE 110

Query: 74  KV-PDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPS 117
            +      F   F  R  NEVAH L+++AL      VW+E VP+
Sbjct: 111 VLSSSESSFQVKFAPRSCNEVAHHLSKLALCNSMEKVWLEEVPT 152

[Close]

BLAST of Lcy11g014320 vs. NCBI nr
Match: XP_023919081.1 (uncharacterized protein LOC112030645 [Quercus suber])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-06
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 20  EGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGELMAELRRKVPDPP 79
           E +A    +    D+G   A++ETDS  +   ++   E   LS VG ++ E+RRKV    
Sbjct: 730 EATAIATALEFASDLGFQRAIIETDSLVLVKALREDSEF--LSAVGLILDEIRRKVNFFN 789

Query: 80  LFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCLNPLI 123
               S V+REGN VAH+LAR A+      VWME VP  L P++
Sbjct: 790 ELHYSHVKREGNIVAHKLARHAISVSDIVVWMEDVPPLLFPVV 830

[Close]

BLAST of Lcy11g014320 vs. NCBI nr
Match: XP_042969071.1 (uncharacterized protein LOC122301753 [Carya illinoinensis])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-06
Identity = 35/111 (31.53%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 8   EERCGGRNVDMAEGSAGFEGMRMVMDMGLLSAMLETDSSRIASLIQNGREMVDLSDVGEL 67
           + RC  ++ ++AE  A  + M++  ++ +   + E D+  I   ++N  E  +LS +G L
Sbjct: 121 DSRCYVQSAEVAECLALLKVMQVYSELNVQKVVFEGDAKVIIDAVKNTEE--NLSTIGHL 180

Query: 68  MAELRRKVPDPPLFDCSFVRREGNEVAHQLARMALREGRSGVWMETVPSCL 119
           + ++R+ + +   +   FV RE N VAH LA+ ALR     VW+E VP+C+
Sbjct: 181 IEDIRKAMVNRQHWSIQFVYREQNNVAHILAKNALRSVEEQVWVEEVPACI 229

The following BLAST results are available for this feature:

BLAST of Lcy11g014320 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g014320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIF1	7.0e-10	38.05	uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
V4UMR3	5.5e-07	33.65	RNase H domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CI...	[more]
A0A2K3JLL1	4.7e-06	34.91	Replication protein A 70 kDa DNA-binding subunit OS=Trifolium pratense OX=57577 ...	[more]
A0A6J1DBJ7	6.1e-06	31.86	uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A2N9G928	1.0e-05	31.30	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23741 PE=4 SV=1	[more]

BLAST of Lcy11g014320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140628.1	1.4e-09	38.05	uncharacterized protein LOC111011237 [Momordica charantia]	[more]
CAB3462371.1	7.9e-08	36.61	unnamed protein product, partial [Digitaria exilis]	[more]
ESR40694.1	1.1e-06	33.65	hypothetical protein CICLE_v10027161mg, partial [Citrus clementina]	[more]
XP_023919081.1	1.9e-06	38.83	uncharacterized protein LOC112030645 [Quercus suber]	[more]
XP_042969071.1	1.9e-06	31.53	uncharacterized protein LOC122301753 [Carya illinoinensis]	[more]

BLAST of Lcy11g014320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 13..101 e-value: 2.3E-11 score: 43.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..108 e-value: 3.5E-7 score: 32.2
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 15..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g014320.1	Lcy11g014320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity