Lcy11g014050 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g014050
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr11: 26129148 .. 26130824 (+)
RNA-Seq ExpressionLcy11g014050
SyntenyLcy11g014050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATGTCTGGTTCGTTGTGGGTTGCCTGGGTTGAGGCTTATATCTTGTGTGCGCGGTCTCTGTGGACTGTTTGCCCCTCTTCGCGGTGGTCTTGGTGTTGGAGAGCGATTCTTAGTCTTCGGGATCAATTTTGGTCACTCATTCGTTTCCGCATTGGTGATGGAAGGAGATGTCTTACATGGGTGGATCCGTGGTTGCCTAAGGGTTCTATTATTCCTCGTTTTTCTGAGAGGGTTATTTATGATGTTGCTAGCTCGTTGTATGCTCCTGTGGCTGATTTCCTCTTGCCTGATGGGTCTTGGCGTTGGCCTAGTATATCGCTTGAGCTATTGCTTGTCTTGCCTTCAGTACAAGGGGTTCAGCTGTGCCTTGCTAGGGAGGATAGTGTGGTTTGGCTCCCGAGTAGGTATGAGGGTTTCTCTGTCTCTAGTGCATGGGAGGCTATTAGGCCTCGTTCTTCGGTTGTTCCTTGGTTTCGCTCGTTATGGTTTGCGGGTAATATCCCTAAACACTCATTTATTGCTTGGCTTGGGGTGCGAGATAGGCTCTATACGAGGGACCGGTTGCACAGGTGGGGATTCTTCGAGCCCCACTCATTACCTTTTGTGCTTTGGTGCCCCTGAGTCTCATGATCATCTGTTTCTTGAGTGCCCTTTTAGCTAGGTTGTGTGGGGTGGGATCTTGAGTTGGGGTGCCTGTCCTCATAGGATTGCCTCATGGGATACTGAGCTGTCTTGGATCTGCCAGTTTAATGGTGGCAAGCGTCGTAGCCGCCGAGTGTGGAGGGTTACCTGGTGTGCCTTGATCTATCACATTTGGAGGGAGAGGAATCTGCATCTCCATGGTTCGAGTCCTCGCTCTCCTCAGACTGTTTTACATGTAGTTTAGGTTGATATTTTCGGTCATTGTGCCTCCTAGCTAGGGTGTGTGTCTTCTCCCCTACCTGGGGCGTCTCCCTGGAGCATGTGTGTGTCGTCTCCCCGAACCATGGAGACGCAGATTCCTGAACCACATGTAAGAAAGAAAAACCATGGCCCATCAAGCAAACATGGTCCAGGGAGATGCCCCAAGCAGGGGAGAAGGCACACCACTTAGTCAGGAAGCACAACGACCAAACATATCAGCCTGAACCACATGTAAAACAGTCTAAGCAGTGTAAGGACCCGAACCATGGAGACGAATATTCCTCTCTCTCCAAATGTGATAGATCCAAGCACACCAGGCAACCCTCCACACTCGGCAGCTACGACGCTTGCCACCACTAAATTGGCAGATCCAAGACAACTCAGTATCCCATGAGGCAATCCTATGTGAACAGGCACCCCAACTCAAGATCCCACCACACACAACCTAACTGAAAAGGCACTCAAAAAATAGATGATCTCAGGACTCAGGGGCACCAAAGCACAATAGACAATCAGTGGGGCTCGAAGAATCTCACCTGTGCAAGCGATCCCTCGTATAGAGCCTATCCCGCACCCCAAGCCAAGCAACAAAGGAGTGTTTAGGGATATTACCCCCAAACAATAACAAGCAAAACCAAGGATAACCGAAGAACGAGGCATGATAGCCTCCCACGCACTAGAGACAGAGAAAACCCCAAACCTACTCGGGAGTCAAACCACACTATCCTCCCTAGCAAGGCACAGCCAAACCTCTTGCAGCGAAGGTAA

mRNA sequence

ATGTTGATGTCTGGTTCGTTGTGGGTTGCCTGGGTTGAGGCTTATATCTTGTGTGCGCGGTCTCTGTGGACTGTTTGCCCCTCTTCGCGGTGGTCTTGGTGTTGGAGAGCGATTCTTAGTCTTCGGGATCAATTTTGGTCACTCATTCGTTTCCGCATTGGTGATGGAAGGAGATGTCTTACATGGGTGGATCCGTGGTTGCCTAAGGGTTCTATTATTCCTCGTTTTTCTGAGAGGGTTATTTATGATGTTGCTAGCTCGTTGTATGCTCCTGTGGCTGATTTCCTCTTGCCTGATGGGTCTTGGCGTTGGCCTAGTATATCGCTTGAGCTATTGCTTGTCTTGCCTTCAGTACAAGGGGTTCAGCTGTGCCTTGCTAGGGAGGATAGTGTGGTTTGGCTCCCGAGTAGAGAAAACCCCAAACCTACTCGGGAGTCAAACCACACTATCCTCCCTAGCAAGGCACAGCCAAACCTCTTGCAGCGAAGGTAA

Coding sequence (CDS)

ATGTTGATGTCTGGTTCGTTGTGGGTTGCCTGGGTTGAGGCTTATATCTTGTGTGCGCGGTCTCTGTGGACTGTTTGCCCCTCTTCGCGGTGGTCTTGGTGTTGGAGAGCGATTCTTAGTCTTCGGGATCAATTTTGGTCACTCATTCGTTTCCGCATTGGTGATGGAAGGAGATGTCTTACATGGGTGGATCCGTGGTTGCCTAAGGGTTCTATTATTCCTCGTTTTTCTGAGAGGGTTATTTATGATGTTGCTAGCTCGTTGTATGCTCCTGTGGCTGATTTCCTCTTGCCTGATGGGTCTTGGCGTTGGCCTAGTATATCGCTTGAGCTATTGCTTGTCTTGCCTTCAGTACAAGGGGTTCAGCTGTGCCTTGCTAGGGAGGATAGTGTGGTTTGGCTCCCGAGTAGAGAAAACCCCAAACCTACTCGGGAGTCAAACCACACTATCCTCCCTAGCAAGGCACAGCCAAACCTCTTGCAGCGAAGGTAA

Protein sequence

MLMSGSLWVAWVEAYILCARSLWTVCPSSRWSWCWRAILSLRDQFWSLIRFRIGDGRRCLTWVDPWLPKGSIIPRFSERVIYDVASSLYAPVADFLLPDGSWRWPSISLELLLVLPSVQGVQLCLAREDSVVWLPSRENPKPTRESNHTILPSKAQPNLLQRR
Homology
BLAST of Lcy11g014050 vs. ExPASy TrEMBL
Match: A0A5A7V3Z0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00690 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 9.7e-33
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = 0

Query: 4   SGSLWVAWVEAYILCARSLWTVCPSSRWSWCWRAILSLRDQFWSLIRFRIGDGRRCLTWV 63
           SGSLWVAWVEAYIL  RSLW V      SWC RAIL  R++   L+R ++G+G     W+
Sbjct: 642 SGSLWVAWVEAYILKGRSLWDVDSRVGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWL 701

Query: 64  DPWLPKGSIIPRFSERVIYDVASSLYAPVADFLLPDGSWRWPSISLELLLVLPSVQGVQL 123
           DPWLP+G+I+ +  ERV+YD AS   A ++DF+ PDG W WP +SLEL+ +   VQ V  
Sbjct: 702 DPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSP 761

Query: 124 CLAREDSVVWLPSR 138
           CL+  DS VW+P R
Sbjct: 762 CLSVSDSWVWVPGR 775

BLAST of Lcy11g014050 vs. ExPASy TrEMBL
Match: A0A5A7T440 (Zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1480G00070 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.8e-32
Identity = 67/135 (49.63%), Postives = 91/135 (67.41%), Query Frame = 0

Query: 4   SGSLWVAWVEAYILCARSLWTVCPSSRWSWCWRAILSLRDQFWSLIRFRIGDGRRCLTWV 63
           SGSLWVAW+EAYIL  +SLW V      SWC+RAIL  R++    +R ++G+G RC  W+
Sbjct: 139 SGSLWVAWMEAYILKGKSLWDVDSRVGRSWCFRAILRKREKLKHHVRMKVGNGNRCRVWL 198

Query: 64  DPWLPKGSIIPRFSERVIYDVASSLYAPVADFLLPDGSWRWPSISLELLLVLPSVQGVQL 123
           DPWL  G+I+ +  ERV+YD AS   A ++DF+ P+G W WP +SLEL+ +   VQ V  
Sbjct: 199 DPWLQGGAILEQVGERVLYDAASRREARLSDFIDPNGEWLWPRVSLELIDLWERVQEVSP 258

Query: 124 CLAREDSVVWLPSRE 139
           CL+  DS VW+P R+
Sbjct: 259 CLSVSDSWVWVPGRQ 273

BLAST of Lcy11g014050 vs. ExPASy TrEMBL
Match: A0A5D3BDZ6 (Zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00360 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = 0

Query: 4   SGSLWVAWVEAYILCARSLWTVCPSSRWSWCWRAILSLRDQFWSLIRFRIGDGRRCLTWV 63
           SGSLWVAW+EAYIL  +SLW V      SWC+RAIL  R++    +R ++G+G RC  W+
Sbjct: 139 SGSLWVAWMEAYILKGKSLWDVDSRVGRSWCFRAILRKREKLKHHVRMKVGNGNRCRVWL 198

Query: 64  DPWLPKGSIIPRFSERVIYDVASSLYAPVADFLLPDGSWRWPSISLELLLVLPSVQGVQL 123
           DPWL  G+I+ +  ERV+YD AS   A ++DF+ P+G W WP +SLEL+ +   VQ V  
Sbjct: 199 DPWLQGGAILEQVGERVLYDAASRREARLSDFIDPNGEWLWPRVSLELIDLWERVQEVSP 258

Query: 124 CLAREDSVVWLPSRE 139
           CL   DS VW+P R+
Sbjct: 259 CLNVSDSWVWVPGRQ 273

BLAST of Lcy11g014050 vs. ExPASy TrEMBL
Match: A0A5A7UVV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00020 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 0

Query: 5   GSLWVAWVEAYILCARSLWTVCPSSRWSWCWRAILSLRDQFWSLIRFRIGDGRRCLTWVD 64
           GSLWVAWVEAYIL  RSLW V      SWC RAIL  R++    +R ++G+G RC  W+D
Sbjct: 501 GSLWVAWVEAYILKGRSLWDVDSRVGRSWCLRAILRKREKLKQHVRMKVGNGNRCRVWLD 560

Query: 65  PWLPKGSIIPRFSERVIYDVASSLYAPVADFLLPDGSWRWPSISLELLLVLPSVQGVQLC 124
           PWL +G+I+ +  ERV+YD AS   A ++DF+ PDG W WP +SLEL+ +  +VQ +  C
Sbjct: 561 PWLQRGAILEQVGERVLYDAASRREASLSDFIGPDGEWLWPRVSLELIDLWETVQEISPC 620

Query: 125 LAREDS 131
           L   +S
Sbjct: 621 LTVSNS 626

BLAST of Lcy11g014050 vs. ExPASy TrEMBL
Match: A0A5A7TKU4 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00080 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 9.4e-28
Identity = 65/147 (44.22%), Postives = 86/147 (58.50%), Query Frame = 0

Query: 6    SLWVAWVEAYILCARSLWTVCPSSRWSWCWRAILSLRDQFWSLIRFRIGDGRRCLTWVDP 65
            SLWVAWVEAYIL  +SLW V      SWC RAIL  RD     +   +GDG  C  W+DP
Sbjct: 869  SLWVAWVEAYILKRKSLWAVDSGVCRSWCLRAILRKRDSLKYHVWIEVGDGSSCRVWLDP 928

Query: 66   WLPKGSIIPRFSERVIYDVASSLYAPVADFLLPDGSWRWPSISLELLLVLPSVQGVQLCL 125
            WL    I+ +  ERV+YD AS   A +++F+ PDG W+WP +S+EL+ +   VQ V+ CL
Sbjct: 929  WLQGVPILEQVGERVLYDAASRREARLSEFIGPDGEWQWPRVSIELIDLWDRVQAVRPCL 988

Query: 126  AREDSVVWLPSRENPKPTRESNHTILP 153
            +  D  VW+P  +       +  TI P
Sbjct: 989  SVRDRWVWVPGHQGGFSIASALDTIRP 1015

BLAST of Lcy11g014050 vs. NCBI nr
Match: KAA0062318.1 (uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32
Identity = 70/134 (52.24%), Postives = 90/134 (67.16%), Query Frame = 0

Query: 4   SGSLWVAWVEAYILCARSLWTVCPSSRWSWCWRAILSLRDQFWSLIRFRIGDGRRCLTWV 63
           SGSLWVAWVEAYIL  RSLW V      SWC RAIL  R++   L+R ++G+G     W+
Sbjct: 642 SGSLWVAWVEAYILKGRSLWDVDSRVGKSWCLRAILRKREKLKHLVRMKVGNGNSFRVWL 701

Query: 64  DPWLPKGSIIPRFSERVIYDVASSLYAPVADFLLPDGSWRWPSISLELLLVLPSVQGVQL 123
           DPWLP+G+I+ +  ERV+YD AS   A ++DF+ PDG W WP +SLEL+ +   VQ V  
Sbjct: 702 DPWLPEGAILEQVGERVMYDAASRRKARLSDFIDPDGEWLWPRVSLELIDLWERVQEVSP 761

Query: 124 CLAREDSVVWLPSR 138
           CL+  DS VW+P R
Sbjct: 762 CLSVSDSWVWVPGR 775

BLAST of Lcy11g014050 vs. NCBI nr
Match: KAA0036886.1 (zf-RVT domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 9.9e-32
Identity = 67/135 (49.63%), Postives = 91/135 (67.41%), Query Frame = 0

Query: 4   SGSLWVAWVEAYILCARSLWTVCPSSRWSWCWRAILSLRDQFWSLIRFRIGDGRRCLTWV 63
           SGSLWVAW+EAYIL  +SLW V      SWC+RAIL  R++    +R ++G+G RC  W+
Sbjct: 139 SGSLWVAWMEAYILKGKSLWDVDSRVGRSWCFRAILRKREKLKHHVRMKVGNGNRCRVWL 198

Query: 64  DPWLPKGSIIPRFSERVIYDVASSLYAPVADFLLPDGSWRWPSISLELLLVLPSVQGVQL 123
           DPWL  G+I+ +  ERV+YD AS   A ++DF+ P+G W WP +SLEL+ +   VQ V  
Sbjct: 199 DPWLQGGAILEQVGERVLYDAASRREARLSDFIDPNGEWLWPRVSLELIDLWERVQEVSP 258

Query: 124 CLAREDSVVWLPSRE 139
           CL+  DS VW+P R+
Sbjct: 259 CLSVSDSWVWVPGRQ 273

BLAST of Lcy11g014050 vs. NCBI nr
Match: TYJ96685.1 (zf-RVT domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 2.2e-31
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = 0

Query: 4   SGSLWVAWVEAYILCARSLWTVCPSSRWSWCWRAILSLRDQFWSLIRFRIGDGRRCLTWV 63
           SGSLWVAW+EAYIL  +SLW V      SWC+RAIL  R++    +R ++G+G RC  W+
Sbjct: 139 SGSLWVAWMEAYILKGKSLWDVDSRVGRSWCFRAILRKREKLKHHVRMKVGNGNRCRVWL 198

Query: 64  DPWLPKGSIIPRFSERVIYDVASSLYAPVADFLLPDGSWRWPSISLELLLVLPSVQGVQL 123
           DPWL  G+I+ +  ERV+YD AS   A ++DF+ P+G W WP +SLEL+ +   VQ V  
Sbjct: 199 DPWLQGGAILEQVGERVLYDAASRREARLSDFIDPNGEWLWPRVSLELIDLWERVQEVSP 258

Query: 124 CLAREDSVVWLPSRE 139
           CL   DS VW+P R+
Sbjct: 259 CLNVSDSWVWVPGRQ 273

BLAST of Lcy11g014050 vs. NCBI nr
Match: KAA0057641.1 (hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 3.5e-29
Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 0

Query: 5   GSLWVAWVEAYILCARSLWTVCPSSRWSWCWRAILSLRDQFWSLIRFRIGDGRRCLTWVD 64
           GSLWVAWVEAYIL  RSLW V      SWC RAIL  R++    +R ++G+G RC  W+D
Sbjct: 501 GSLWVAWVEAYILKGRSLWDVDSRVGRSWCLRAILRKREKLKQHVRMKVGNGNRCRVWLD 560

Query: 65  PWLPKGSIIPRFSERVIYDVASSLYAPVADFLLPDGSWRWPSISLELLLVLPSVQGVQLC 124
           PWL +G+I+ +  ERV+YD AS   A ++DF+ PDG W WP +SLEL+ +  +VQ +  C
Sbjct: 561 PWLQRGAILEQVGERVLYDAASRREASLSDFIGPDGEWLWPRVSLELIDLWETVQEISPC 620

Query: 125 LAREDS 131
           L   +S
Sbjct: 621 LTVSNS 626

BLAST of Lcy11g014050 vs. NCBI nr
Match: KAA0042317.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK15441.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-27
Identity = 65/147 (44.22%), Postives = 86/147 (58.50%), Query Frame = 0

Query: 6    SLWVAWVEAYILCARSLWTVCPSSRWSWCWRAILSLRDQFWSLIRFRIGDGRRCLTWVDP 65
            SLWVAWVEAYIL  +SLW V      SWC RAIL  RD     +   +GDG  C  W+DP
Sbjct: 869  SLWVAWVEAYILKRKSLWAVDSGVCRSWCLRAILRKRDSLKYHVWIEVGDGSSCRVWLDP 928

Query: 66   WLPKGSIIPRFSERVIYDVASSLYAPVADFLLPDGSWRWPSISLELLLVLPSVQGVQLCL 125
            WL    I+ +  ERV+YD AS   A +++F+ PDG W+WP +S+EL+ +   VQ V+ CL
Sbjct: 929  WLQGVPILEQVGERVLYDAASRREARLSEFIGPDGEWQWPRVSIELIDLWDRVQAVRPCL 988

Query: 126  AREDSVVWLPSRENPKPTRESNHTILP 153
            +  D  VW+P  +       +  TI P
Sbjct: 989  SVRDRWVWVPGHQGGFSIASALDTIRP 1015

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V3Z09.7e-3352.24Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7T4404.8e-3249.63Zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5D3BDZ61.1e-3149.63Zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7UVV01.7e-2950.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TKU49.4e-2844.22Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
Match NameE-valueIdentityDescription
KAA0062318.12.0e-3252.24uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa][more]
KAA0036886.19.9e-3249.63zf-RVT domain-containing protein [Cucumis melo var. makuwa][more]
TYJ96685.12.2e-3149.63zf-RVT domain-containing protein [Cucumis melo var. makuwa][more]
KAA0057641.13.5e-2950.00hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa][more]
KAA0042317.11.9e-2744.22non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g014050.1Lcy11g014050.1mRNA