Lcy11g013940 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g013940
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr11: 23420761 .. 23423756 (+)
RNA-Seq ExpressionLcy11g013940
SyntenyLcy11g013940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTAACCTGGTGTCGACCTATTTGGCAAACAGAGAAAGTGGTCGTACAAGATGCTTTCGAGACTTATTTTTCATCCTTATTCTCTTCGGGGAATCCTGTTCAGGGGGATTTGGATGTAGTTCTTAATTGTGTCCCTCTGAAAAGTTACGGAAGCGATGTACCAGATGCTAATGGCACCCTTTTCGAGGGAGGAAGTGTATTATGCAATTAAAAGCTTTCATCCGACGAAGGCCCTGGGTCCAGATGGCTTTCCTGCAATTTTTTATCAGAAATATTGGACAATAGTGGGGGATACCACGGTAGCGAATTGTTTGGCTATTTTGAACTCAGGCGAATCGATTCGAGATTGGAATCATACAAATATTGTGCTAATCCCAAAGCTTCGTCAAGCAAGGTTAGTATCTGACTACAGACCTATTAGTTTGTGTAACGTCTCGTATAAAATTGTCACTAAAGTCATAGCCAATAGACTAAAGCATGTATTGGGTGAGATTATAGACGAATGTCAGTCTGCTTTTATTCCTGGTAGATCTATATCGGATAATATGATTTTGGCTCATGAAACTTTACACTATCTCCAAAATAGACGTAAAGGAAAAGTTGGGTATGCTGCCTTAAAACTTGATATGAGTAAAGCTTATGATAGGGTGGAGTGGTCTTATCTGAGCCAAATTATGGCTAAACTGGGTTTTAATGAGGACTGGATTAAATTGATTATGAAGTGTGTCTCAATGACCACGTTTTCTATTCTTATGAATGGAGAATCTTTTGGTTTCATTCAACCATCCAGGGGATTAAGGCAGGGTGACCCCCTTTCTCCTTATTTATTTCTGATCTGCACGGAAGGACTCTCTGCTTTGTTGGTTTCTGCAAGGAATAATTATATGGCAGGCGTTTCTATTGCACGGGCTTGTCCCAAAGTATCTCATTTATTTTTCGCAGATGATAGCCTAGCCTTTCTCAAAGTAGCGGCTGCTCATTTTGGTCATTTTAAGACTGTTTTACAAACTTACGAGATGACGTCAGGTCAGTGTGTTAATGCCCAGAAGTCAACAATGTTTTTCTCAAAAAATGTTCCGGTTGACTCTAGGCAGTATCTGTCTAATATATTGTCTATGGATGCATCGGAGTCTGTGGGGAAGTACCTCGGTCTTCCGTCTACTTTCCACAGAGGAAAAACACGAGATTTCCAATTTTTATTAGATAAGGTGTGGTCTTTGTTGCAAAGGTGGAAGAGGCAACTTTTTTCTCAGGGAGGAAGGGAGGTGTTGATTAAAGCCATCATTCAGGCTATTCCTACATTTGCGATGGGTTGTTTTAGAATTCCCAAGGGTATCTTATCAAAAATTTCGGCTCTTTGTGCCAAATTCTGGTGGGGCTCCCAAGGGGATAAGAGGAAGGTGCATTGGCGACGTTGGCAGGATCTCTGTAAACCAAAAGAGATTGGTGGGTTGAATTTTCGTGATCTGGTTAACTTTAACCAGGCTATGCTTGCGAAACAGGTCTGGAGGGTTTTGACTAAGCCACACCTCACAGTATCCAAAGTTTTAAGGGGGAGATATTTTCCGCACTCATCGGTCTTGGATGCGCCCCTAAAGTCTTCTTCTTCTTTCTTCTGGAAGGGCTTTGTGTGGGGGAAGGATTTGTTAAAAGCTGGTATCCGGAAAGATCTTGGAAATGGGCTTTCCATTAATTTATTTACAGACCCATGGATTCCCCATCCAAGTACCTTTAGAGCGATTTCTCCGTCCAATGATTCCGTGGTAAATGTTGTTGTGGCAGATTTTATTACTCCATCATATCAGTGGGATGTTGTGAAGCTTAACCAGTGTCTGGTAAAGGAAGATGTTGAGTTGATCCTTAGCCTTCCAATTAGTAGTTCTGCCTCTGATAGATGGGTATGGCATTATGATTGTAGGGGTGAGTACTCTGTTAAGAGTGGATACAAGCTCAGTATGATGATTGATCAACAGGCAACCTTATCTGACACTTTGAGAGAGATGAGGTGGTGGAAGAAAATCTGGAAATTGAGTGTGCCTAGCAAGGTCAAGATTTTTGTGTGGCGGTCATACAACAATTCAATTCCAACAATGGTCAATCTTCGCAATCATCATGTTCCGGTCGAAGGTATCTGCCCTATCTGTAAGGAGGAGATGGAGACTTCGGATCATGCTCTCTTTCAGTGTTCGAGAGCTCTTGCGGTTTGGGGAATAATATCTCCAATTATGATGGCAGACTGTAGTGAATATTTTGATATTAAGGACCGATGGTTGCGGCTAGCAGAGGACTCGAGTGTATGTCTAGAGCGTATTTGTGTTGGGGGCTTGGGCTATCTGGAATGACAGAAATAGCCAGGTTCATAACATCCCCGTTCCAACTGTAGAGATGCGCTGTGAATGGATTATCGAATACTTGAACGAGTATTGGCAGGCAAATCCGAAAGGTTCTGTAAATATTAAGAATGTGGAGGATGTGCACCATATTATTTCAAATGGAGAAGATTATATCTTGAATTCTGATGCAGCGTTTCTGGGTACTATGCGAGCTAGTGGGATTGGATTAGTTTTGCGAGATAAATTCGGTCATCTGAAGGCCGCACAATCTTCACAATCTCATGTTTATACTTCTCCGTTAGGGGCGGAAGCTATTGTTGTTCTCCATGGTCTTTATATGGCTAAAACGTTGGGGATAAATCGTGTAACGATCTTGTCCGATTCTCTGAAGTTAATCAAATTAGTCAATGCGGAGATTCAATGTGAGTCTTGTATATCGACTACTATCTGGGACATCAGGGAGATTCAAAAATCTTTTGATAAGGTGAGTTTTAAGTTCGTTGGTCGTCAGTTTAATGGCATTGCTCATAAATTGGCTCGGGATGGGTTAGAGTCCTTACCTTTCTTCTTGTCAGAAAACTATCCTTCGTGGATGATCAAGTTGTCGTGTAAAGAGCGATGTATGTTTGCTTCCCTTAGGGGATGTCATGATTCTTAA

mRNA sequence

ATGCAAGTAACCTGGTGTCGACCTATTTGGCAAACAGAGAAAGTGGTCGTACAAGATGCTTTCGAGACTTATTTTTCATCCTTATTCTCTTCGGGGAATCCTGTTCAGGGGGATTTGGATGTAGTTCTTAATTGTGTCCCTCTGAAAAGTTACGGAAGCGATAATGTGGAGGATGTGCACCATATTATTTCAAATGGAGAAGATTATATCTTGAATTCTGATGCAGCGTTTCTGGGTACTATGCGAGCTAGTGGGATTGGATTAGTTTTGCGAGATAAATTCGGTCATCTGAAGGCCGCACAATCTTCACAATCTCATGTTTATACTTCTCCGTTAGGGGCGGAAGCTATTGTTGTTCTCCATGGTCTTTATATGGCTAAAACGTTGGGGATAAATCGTGTAACGATCTTGTCCGATTCTCTGAAGTTAATCAAATTAGTCAATGCGGAGATTCAATGTGAGTCTTGTATATCGACTACTATCTGGGACATCAGGGAGATTCAAAAATCTTTTGATAAGGTGAGTTTTAAGTTCGTTGGTCGTCAGTTTAATGGCATTGCTCATAAATTGGCTCGGGATGGGTTAGAGTCCTTACCTTTCTTCTTGTCAGAAAACTATCCTTCGTGGATGATCAAGTTGTCGTGTAAAGAGCGATGTATGTTTGCTTCCCTTAGGGGATGTCATGATTCTTAA

Coding sequence (CDS)

ATGCAAGTAACCTGGTGTCGACCTATTTGGCAAACAGAGAAAGTGGTCGTACAAGATGCTTTCGAGACTTATTTTTCATCCTTATTCTCTTCGGGGAATCCTGTTCAGGGGGATTTGGATGTAGTTCTTAATTGTGTCCCTCTGAAAAGTTACGGAAGCGATAATGTGGAGGATGTGCACCATATTATTTCAAATGGAGAAGATTATATCTTGAATTCTGATGCAGCGTTTCTGGGTACTATGCGAGCTAGTGGGATTGGATTAGTTTTGCGAGATAAATTCGGTCATCTGAAGGCCGCACAATCTTCACAATCTCATGTTTATACTTCTCCGTTAGGGGCGGAAGCTATTGTTGTTCTCCATGGTCTTTATATGGCTAAAACGTTGGGGATAAATCGTGTAACGATCTTGTCCGATTCTCTGAAGTTAATCAAATTAGTCAATGCGGAGATTCAATGTGAGTCTTGTATATCGACTACTATCTGGGACATCAGGGAGATTCAAAAATCTTTTGATAAGGTGAGTTTTAAGTTCGTTGGTCGTCAGTTTAATGGCATTGCTCATAAATTGGCTCGGGATGGGTTAGAGTCCTTACCTTTCTTCTTGTCAGAAAACTATCCTTCGTGGATGATCAAGTTGTCGTGTAAAGAGCGATGTATGTTTGCTTCCCTTAGGGGATGTCATGATTCTTAA

Protein sequence

MQVTWCRPIWQTEKVVVQDAFETYFSSLFSSGNPVQGDLDVVLNCVPLKSYGSDNVEDVHHIISNGEDYILNSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLGINRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKLARDGLESLPFFLSENYPSWMIKLSCKERCMFASLRGCHDS
Homology
BLAST of Lcy11g013940 vs. ExPASy TrEMBL
Match: A0A2P6QJ46 (Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0066251 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-13
Identity = 50/143 (34.97%), Postives = 77/143 (53.85%), Query Frame = 0

Query: 71  LNSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLG 130
           +N D A        G+G+V RD FG LK A +     Y SP   EA+ +LHGL  A  +G
Sbjct: 1   MNFDGALDPINGICGLGVVFRDHFGVLKGAMAVPQIGYLSPRSVEALALLHGLRFAAHVG 60

Query: 131 INRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKL 190
             R+ I  D+L +I  +  E    S     + +++ + +SF+  S  FV R+ N +AH+L
Sbjct: 61  FGRLEIEGDALSIITSLQVECDDLSLEGHLLEEVKRLVESFEFCSSHFVKREGNQVAHRL 120

Query: 191 ARDGLE-SLPFFLSENYPSWMIK 213
           A++ L+ S PF   E+ P W+I+
Sbjct: 121 AKEALKVSQPFLCLESGPPWLIQ 143

BLAST of Lcy11g013940 vs. ExPASy TrEMBL
Match: A0A7J9CHG1 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_004472 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.3e-10
Identity = 52/159 (32.70%), Postives = 79/159 (49.69%), Query Frame = 0

Query: 71  LNSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLG 130
           +N  A+F G +  S  GLV RD  G +   +   +    SP   EAI  L G+ M   LG
Sbjct: 219 INFYASFQGQLLKSCSGLVGRDSVGQIVGMRMILNDYVPSPFAGEAIACLQGVQMGLDLG 278

Query: 131 INRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKL 190
            + V +  DSL ++K +  + +  S I+  I D++   + F +  F FVGR  NG AH+L
Sbjct: 279 FHGVILEGDSLTVVKKLQNKNKDISEINPIIEDVKRASRGFVECRFNFVGRNTNGTAHRL 338

Query: 191 ARDGL-ESLPFFLSENYPSWMIKLSCKERCMFASLRGCH 229
           A++GL      +L E  P  + K + +E   +A L   H
Sbjct: 339 AKEGLVNGETSYLMERTPKAVWK-AAEEDSRWAELGHLH 376

BLAST of Lcy11g013940 vs. ExPASy TrEMBL
Match: A0A7J8YQL8 (RNase H domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_027351 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.3e-10
Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 0

Query: 71  LNSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLG 130
           +N DAA+      S  G++LRD+ G++ A++ +      SP  AEA+     + +   LG
Sbjct: 136 VNFDAAYCQREAISCSGILLRDQRGNVIASKIACHESIPSPFAAEAVACTVAMKLCLDLG 195

Query: 131 INRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKL 190
           +  + +  DSL +IK   +     S IS  I D++++ K F   +FK V R  NG+AH+L
Sbjct: 196 LRILEVEGDSLTVIKKAKSNEDDRSEISAYIEDMKKMTKDFQVCTFKHVQRSANGVAHQL 255

Query: 191 ARDGLE-SLPFFLSENYPSWMIKLSCKERC 220
             +GL+  L FF S     ++ +L  ++RC
Sbjct: 256 VSEGLKLKLAFFESNGVLDFVEELVEQDRC 285

BLAST of Lcy11g013940 vs. ExPASy TrEMBL
Match: A0A7J8SJ69 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_003881 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.3e-10
Identity = 52/159 (32.70%), Postives = 79/159 (49.69%), Query Frame = 0

Query: 71  LNSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLG 130
           +N  A+F G +  SG GLV RD  G +   +   +    SP   EAI  L G+ M    G
Sbjct: 217 INFYASFQGQLLKSGSGLVGRDSAGQIVGMRMILNDYVPSPFAGEAIACLQGVQMGLDPG 276

Query: 131 INRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKL 190
            + V +  DSL ++K +  + +  S I+  I D++   + F +  F FVGR  NG AH+L
Sbjct: 277 FHGVILEGDSLTVVKKLQNKNKDISEINPIIEDVKRAGRGFVECRFNFVGRNTNGTAHRL 336

Query: 191 ARDGL-ESLPFFLSENYPSWMIKLSCKERCMFASLRGCH 229
           A++GL      +L E  P  + K + +E   +A L   H
Sbjct: 337 AKEGLVNGETSYLMERTPKAVWK-AAEEDSRWAELGHLH 374

BLAST of Lcy11g013940 vs. ExPASy TrEMBL
Match: A0A7J8VH54 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_006016 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.3e-10
Identity = 52/159 (32.70%), Postives = 79/159 (49.69%), Query Frame = 0

Query: 71  LNSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLG 130
           +N  A+F G +  SG GLV RD  G +   +   +    SP   EAI  L G+ M    G
Sbjct: 275 INFYASFQGQLLKSGSGLVGRDSAGQIVGMRMILNDYVPSPFAGEAIACLQGVQMGLDPG 334

Query: 131 INRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKL 190
            + V +  DSL ++K +  + +  S I+  I D++   + F +  F FVGR  NG AH+L
Sbjct: 335 FHGVILEGDSLTVVKKLQNKNKDISEINPIIEDVKRAGRGFVECRFNFVGRNTNGTAHRL 394

Query: 191 ARDGL-ESLPFFLSENYPSWMIKLSCKERCMFASLRGCH 229
           A++GL      +L E  P  + K + +E   +A L   H
Sbjct: 395 AKEGLVNGETSYLMERTPKAVWK-AAEEDSRWAELGHLH 432

BLAST of Lcy11g013940 vs. NCBI nr
Match: PRQ34202.1 (putative ribonuclease H-like domain-containing protein [Rosa chinensis])

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-13
Identity = 50/143 (34.97%), Postives = 77/143 (53.85%), Query Frame = 0

Query: 71  LNSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLG 130
           +N D A        G+G+V RD FG LK A +     Y SP   EA+ +LHGL  A  +G
Sbjct: 1   MNFDGALDPINGICGLGVVFRDHFGVLKGAMAVPQIGYLSPRSVEALALLHGLRFAAHVG 60

Query: 131 INRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKL 190
             R+ I  D+L +I  +  E    S     + +++ + +SF+  S  FV R+ N +AH+L
Sbjct: 61  FGRLEIEGDALSIITSLQVECDDLSLEGHLLEEVKRLVESFEFCSSHFVKREGNQVAHRL 120

Query: 191 ARDGLE-SLPFFLSENYPSWMIK 213
           A++ L+ S PF   E+ P W+I+
Sbjct: 121 AKEALKVSQPFLCLESGPPWLIQ 143

BLAST of Lcy11g013940 vs. NCBI nr
Match: XP_042962749.1 (uncharacterized protein LOC122297028 [Carya illinoinensis])

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-11
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 0

Query: 71   LNSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLG 130
            +N D A  G +  +GIGLVLRD  G++    S   H   +    EA  VL GL      G
Sbjct: 998  MNVDGATFGEIDKAGIGLVLRDHEGNVLMTCSKIEHAVANSEFIEATAVLRGLQFGLQWG 1057

Query: 131  INRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKL 190
            IN++ + SD L LI ++N+  +C S  +  I +IR I+  F ++SF  V RQ N +AH L
Sbjct: 1058 INKLVMESDCLFLINVLNSSSECLSDFAYVIDEIRRIRSYFHEISFVHVCRQGNNVAHGL 1117

Query: 191  AR 193
            AR
Sbjct: 1118 AR 1119

BLAST of Lcy11g013940 vs. NCBI nr
Match: XP_041011337.1 (uncharacterized protein LOC121255120 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 79.0 bits (193), Expect = 6.1e-11
Identity = 48/150 (32.00%), Postives = 77/150 (51.33%), Query Frame = 0

Query: 69  YILNSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKT 128
           Y +N DAA   ++   GIG ++RD  G +     ++ ++  SP  AEA  +L  +   K 
Sbjct: 94  YKVNWDAALNESLGVLGIGAIIRDSQGMVLGTIRARRNIRVSPFTAEAYAMLMAILFCKD 153

Query: 129 LGINRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAH 188
            G+  + +  DSL+++K +   ++  S     I D++ I KSF   S   + R  N  AH
Sbjct: 154 TGVTNIVLEGDSLQVVKQMQKSVKDWSHGGLIIEDVKAIMKSFPGWSIGHIRRDANMAAH 213

Query: 189 KLARDGLESL-PFFLSENYPSWMIKLSCKE 218
            LA+D L S+   F  EN+PS +  + CKE
Sbjct: 214 LLAKDALNSVEDSFSLENFPSCIEHIICKE 243

BLAST of Lcy11g013940 vs. NCBI nr
Match: XP_024157591.1 (uncharacterized protein LOC112165325 [Rosa chinensis])

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-10
Identity = 47/141 (33.33%), Postives = 74/141 (52.48%), Query Frame = 0

Query: 71   LNSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLG 130
            +N D A  G     G+G+V RD  G+LK A +       +P   EA+ +LHGL  A  +G
Sbjct: 1060 MNFDGAHDGKNGVCGLGVVFRDTQGNLKGAMAVPQIGNIAPRSIEALALLHGLRFALHVG 1119

Query: 131  INRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKL 190
               + I  D+L +I  +    +  S     I +++ + +SF   S  FV R+ N +AH+L
Sbjct: 1120 FTMIEIEGDALSVINALQENSEDYSAEGHLIDEVKFLVQSFTSCSSHFVKREGNKVAHRL 1179

Query: 191  ARDGLE-SLPFFLSENYPSWM 211
            A++ L+ S PF   E+ PSW+
Sbjct: 1180 AKEALKISQPFLCLESGPSWL 1200

BLAST of Lcy11g013940 vs. NCBI nr
Match: KAG7547885.1 (Reverse transcriptase domain [Arabidopsis suecica])

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-10
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 0

Query: 72  NSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLGI 131
           N+DAA+    R SG G +  D  G      +  +    SPL AEA+ +L  +  A+TLG 
Sbjct: 630 NTDAAWKDHHR-SGFGWIFSDHQGSTLHQGTGSADKVNSPLQAEALALLFAMQQARTLGF 689

Query: 132 NRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKLA 191
           NR++  SDS +L+K +N+E+Q +  +   ++DI ++   FD +SF F+ R  N +A  LA
Sbjct: 690 NRISFASDSTQLVKAINSELQFKE-LHGILFDILDLSALFDCISFCFIPRTENTLADSLA 749

Query: 192 RDGLESL 199
           +  L SL
Sbjct: 750 KQALSSL 754

BLAST of Lcy11g013940 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-07
Identity = 40/125 (32.00%), Postives = 62/125 (49.60%), Query Frame = 0

Query: 73  SDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLGIN 132
           +DAA+    +  G G V+R+          S +     PL AEAI +   L  A+++GI 
Sbjct: 35  TDAAWKHETKDVGFGWVIRNCPELTALHYQSAARNVRLPLMAEAIALFLALQYAQSIGIT 94

Query: 133 RVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKLAR 192
           ++++ SDS +LI  + +E          I+DI  +   F  VSF FV R  N +A +LA+
Sbjct: 95  KLSMASDSQQLITAITSESPSTEFYG-IIFDILNLSLGFADVSFSFVPRSENRVADELAK 154

Query: 193 DGLES 198
             L S
Sbjct: 155 SSLIS 158

BLAST of Lcy11g013940 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 4.4e-07
Identity = 41/140 (29.29%), Postives = 66/140 (47.14%), Query Frame = 0

Query: 72  NSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLGI 131
           N+DA +       GIG VLR++ G +K   +       S L AE   +   +        
Sbjct: 431 NTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQY 490

Query: 132 NRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKLA 191
           N V   SDS  LI+++N + +    +  TI D++ +   F +V F F+ R+ N +A ++A
Sbjct: 491 NYVIFESDSQVLIEILNND-EIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVA 550

Query: 192 RDGLESLPF--FLSENYPSW 210
           R+ L  L +   L    PSW
Sbjct: 551 RESLSFLNYDPKLYSIVPSW 569

BLAST of Lcy11g013940 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.7e-06
Identity = 42/148 (28.38%), Postives = 70/148 (47.30%), Query Frame = 0

Query: 72  NSDAAF-LGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLG 131
           N DA F +  + A+G G ++R+ +G   +  S +    ++PL AE   +L  L      G
Sbjct: 337 NFDAGFDVQKLEATG-GWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRG 396

Query: 132 INRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKL 191
             +V +  D   LI L+N  I   S ++  + DI      F  + F F+ R+ N +AH L
Sbjct: 397 YTQVFMEGDCQTLINLING-ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVL 456

Query: 192 ARDGLESLPFFL-SENYPSWMIKLSCKE 218
           A+ G     F+  S + P W+ +  C +
Sbjct: 457 AKYGCTYSTFYSGSGSLPIWLDRYFCND 482

BLAST of Lcy11g013940 vs. TAIR 10
Match: AT2G13980.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 6.3e-06
Identity = 44/147 (29.93%), Postives = 64/147 (43.54%), Query Frame = 0

Query: 72  NSDAAFLGTMRASGIGLVLRDKFGHLKAAQSSQSHVYTSPLGAEAIVVLHGLYMAKTLGI 131
           N DA F      S    ++R+  G  +   S Q    ++PL AE   +L  L      G 
Sbjct: 24  NYDAGFNVQNLDSTARWIIRNHDGIAQHWGSLQLDNTSTPLEAETKALLAALQQTWIRGY 83

Query: 132 NRVTILSDSLKLIKLVNAEIQCESCISTTIWDIREIQKSFDKVSFKFVGRQFNGIAHKLA 191
            RV +  D   L  LV+      + ++  + DIR   K F  V F FV R  N +AH+LA
Sbjct: 84  LRVIMEGDCETLTNLVSGS-SSHNHLANLLDDIRIWAKKFSNVQFSFVRRGGNKVAHELA 143

Query: 192 RDGLESLPFFL-SENYPSWMIKLSCKE 218
           + G  S  F+  S   P W+ +  C +
Sbjct: 144 KLGCNSTCFYSDSCTLPIWLHQHYCND 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P6QJ462.4e-1334.97Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=7464... [more]
A0A7J9CHG13.3e-1032.70Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_004472 PE=4 ... [more]
A0A7J8YQL83.3e-1032.00RNase H domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_027351 P... [more]
A0A7J8SJ694.3e-1032.70Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_003881 PE=4 SV... [more]
A0A7J8VH544.3e-1032.70Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_006016 PE=4... [more]
Match NameE-valueIdentityDescription
PRQ34202.15.0e-1334.97putative ribonuclease H-like domain-containing protein [Rosa chinensis][more]
XP_042962749.14.7e-1139.34uncharacterized protein LOC122297028 [Carya illinoinensis][more]
XP_041011337.16.1e-1132.00uncharacterized protein LOC121255120 [Juglans microcarpa x Juglans regia][more]
XP_024157591.11.0e-1033.33uncharacterized protein LOC112165325 [Rosa chinensis][more]
KAG7547885.11.0e-1036.22Reverse transcriptase domain [Arabidopsis suecica][more]
Match NameE-valueIdentityDescription
AT4G09490.11.5e-0732.00Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT4G29090.14.4e-0729.29Ribonuclease H-like superfamily protein [more]
AT3G09510.11.7e-0628.38Ribonuclease H-like superfamily protein [more]
AT2G13980.16.3e-0629.93Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 68..197
e-value: 1.1E-16
score: 63.1
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 72..193
e-value: 1.9E-22
score: 79.4
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 71..197
NoneNo IPR availablePANTHERPTHR47074:SF37PROTEIN, PUTATIVE-RELATEDcoord: 71..197
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 71..192
e-value: 9.18613E-22
score: 84.6732
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 68..199

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g013940.1Lcy11g013940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity