Lcy11g013850 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g013850
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionBED-type domain-containing protein
LocationChr11: 22907878 .. 22908204 (-)
RNA-Seq ExpressionLcy11g013850
SyntenyLcy11g013850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGGAATATTGATAGAAAATTGTATGCTATGATCGTAGATAATTGTTGTACAAATGACTCCATGGTTCATATGCTTTTAGATAGACTTTCAAGAAATTTAATGTTGGATGGGATTTTATTTCATATGCGATGTTGTGTTCATATTTTGAATTTGATTGTGAAAGATGAATTAACAGTAATAGGGGATGGTATTGAAAGAGTTCGTAATAGTGTTGCTTTTTGGTCAAATACACCAAAGAAATTAGAAAAGTTTGAAAAAACTGCTCATCAATTGAATGTTCACATTGGGAGGAAGTTAGCACTTGATTGTTGTACTAGATGA

mRNA sequence

ATGGATTGGAATATTGATAGAAAATTGTATGCTATGATCGTAGATAATTGTTGTACAAATGACTCCATGGTTCATATGCTTTTAGATAGACTTTCAAGAAATTTAATGTTGGATGGGATTTTATTTCATATGCGATGTTGTGTTCATATTTTGAATTTGATTGTGAAAGATGAATTAACAGTAATAGGGGATGGTATTGAAAGAGTTCGTAATAGTGTTGCTTTTTGGTCAAATACACCAAAGAAATTAGAAAAGTTTGAAAAAACTGCTCATCAATTGAATGTTCACATTGGGAGGAAGTTAGCACTTGATTGTTGTACTAGATGA

Coding sequence (CDS)

ATGGATTGGAATATTGATAGAAAATTGTATGCTATGATCGTAGATAATTGTTGTACAAATGACTCCATGGTTCATATGCTTTTAGATAGACTTTCAAGAAATTTAATGTTGGATGGGATTTTATTTCATATGCGATGTTGTGTTCATATTTTGAATTTGATTGTGAAAGATGAATTAACAGTAATAGGGGATGGTATTGAAAGAGTTCGTAATAGTGTTGCTTTTTGGTCAAATACACCAAAGAAATTAGAAAAGTTTGAAAAAACTGCTCATCAATTGAATGTTCACATTGGGAGGAAGTTAGCACTTGATTGTTGTACTAGATGA

Protein sequence

MDWNIDRKLYAMIVDNCCTNDSMVHMLLDRLSRNLMLDGILFHMRCCVHILNLIVKDELTVIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR
Homology
BLAST of Lcy11g013850 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 9.9e-15
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 0

Query: 3   WNIDRKLYAMIVDNCCTNDSMVHMLLDRL---SRNLMLDGILFHMRCCVHILNLIVKDEL 62
           WNI++KL+A+ +DN   N+  VH +++ L     NL+ DG  FH+RC  HILNL+ KD L
Sbjct: 355 WNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGL 414

Query: 63  TVIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
            VI   IE+++  V    ++P + E+  K A + ++   + ++ D  TR
Sbjct: 415 AVIAGTIEKIKAIVLAVKSSPLQWEELMKCASECDLDKSKGISYDVSTR 463

BLAST of Lcy11g013850 vs. ExPASy Swiss-Prot
Match: P03010 (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.9e-15
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = 0

Query: 3   WNIDRKLYAMIVDNCCTNDSMVHMLLDRL---SRNLMLDGILFHMRCCVHILNLIVKDEL 62
           WNI++KL+A+ +DN   N+  VH +++ L     NL+ DG  FH+RC  HILNL+ KD L
Sbjct: 300 WNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGL 359

Query: 63  TVIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
            VI   IE+++  V    ++P + E+  K A + ++   + ++ D  TR
Sbjct: 360 AVIAGTIEKIKAIVLAVKSSPLQWEELMKCASECDLDKSKGISYDVSTR 408

BLAST of Lcy11g013850 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-12
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 0

Query: 2   DWNIDRKLYAMIVDN-CCTNDSMVHMLLDRLS--RNLMLDGILFHMRCCVHILNLIVKDE 61
           DWN+  KL+ + +DN C ++D     L D LS   NLML G LF +RC  HILN + +D 
Sbjct: 294 DWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDV 353

Query: 62  LTVIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
           +  I   I  +R S+ F   +P + EKF + A QL +   + L LD  T+
Sbjct: 354 IASIHGVIYNIRESIKFIKASPSREEKFAEIALQLEIPSTKTLCLDVTTQ 403

BLAST of Lcy11g013850 vs. ExPASy Swiss-Prot
Match: B9FJG3 (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-11
Identity = 43/110 (39.09%), Postives = 60/110 (54.55%), Query Frame = 0

Query: 2   DWNIDRKLYAMIVDN-CCTNDSMVHMLLDRLS--RNLMLDGILFHMRCCVHILNLIVKDE 61
           DWN+  KL+ + +DN C ++D     L D LS   NLML G LF +RC  HILN + +D 
Sbjct: 294 DWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDV 353

Query: 62  LTVIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
           +  I   I  +R S+ F   +P   EKF + A QL +   + L LD  T+
Sbjct: 354 IASIHGVIYNIRESIKFIKASPSCEEKFAEIALQLEIPSTKTLCLDVTTQ 403

BLAST of Lcy11g013850 vs. ExPASy Swiss-Prot
Match: Q75HY5 (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-08
Identity = 35/111 (31.53%), Postives = 59/111 (53.15%), Query Frame = 0

Query: 2   DWNIDRKLYAMIVDN-CCTNDSMVHMLLDRLSR---NLMLDGILFHMRCCVHILNLIVKD 61
           DWN+  KL+ + +DN   ++D     +++ LS    N+M+ G LF +RC  HILN + +D
Sbjct: 334 DWNMKDKLFTITLDNDPSSHDIYSANMINYLSNKKDNIMIKGQLFVVRCYAHILNTVAQD 393

Query: 62  ELTVIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
            +  +   I  +R S+ F   +    +KF + A QL +   + L LD  T+
Sbjct: 394 VIASVHSVIYHIRESIKFIKASSVHEDKFAEIALQLEIPSAKTLCLDVTTQ 444

BLAST of Lcy11g013850 vs. ExPASy TrEMBL
Match: A0A6A2X9E9 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116970pilonHSYRG00133 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.9e-32
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 0

Query: 2   DWNIDRKLYAMIVDNCCTNDSMVHMLLDRLSRN-LMLDGILFHMRCCVHILNLIVKDELT 61
           DWNIDRK+  + VDNC TND M+H+LLD+LS N L+L G LFHMRCC HILNLIV+D L+
Sbjct: 247 DWNIDRKISTVTVDNCSTNDLMIHLLLDKLSLNSLILGGELFHMRCCAHILNLIVQDGLS 306

Query: 62  VIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
           VIGDGIER+R+SV FWS T K++EKFE+ A  L +   +KL+LDC TR
Sbjct: 307 VIGDGIERIRDSVYFWSATQKRIEKFEEAARHLTIDCSKKLSLDCKTR 354

BLAST of Lcy11g013850 vs. ExPASy TrEMBL
Match: A0A6A3B3F8 (BED-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110328pilonHSYRG00714 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.9e-32
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 0

Query: 2   DWNIDRKLYAMIVDNCCTNDSMVHMLLDRLSRN-LMLDGILFHMRCCVHILNLIVKDELT 61
           DWNIDRK+  + VDNC TND M+H+LLD+LS N L+L G LFHMRCC HILNLIV+D L+
Sbjct: 331 DWNIDRKISTVTVDNCSTNDLMIHLLLDKLSLNSLILGGELFHMRCCAHILNLIVQDGLS 390

Query: 62  VIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
           VIGDGIER+R+SV FWS T K++EKFE+ A  L +   +KL+LDC TR
Sbjct: 391 VIGDGIERIRDSVYFWSATQKRIEKFEEAARHLTIDCSKKLSLDCKTR 438

BLAST of Lcy11g013850 vs. ExPASy TrEMBL
Match: A0A6A2WP44 (BED-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00113337pilonHSYRG00037 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.2e-32
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 0

Query: 2   DWNIDRKLYAMIVDNCCTNDSMVHMLLDRLSRN-LMLDGILFHMRCCVHILNLIVKDELT 61
           DWNIDRK+  + VDNC TND M+H+LLD+LS N L+L G LFHMRCC HILNLIV+D L+
Sbjct: 273 DWNIDRKISTVTVDNCSTNDLMIHLLLDKLSLNSLILGGELFHMRCCAHILNLIVQDGLS 332

Query: 62  VIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
           VIGDGIER+R+SV FWS T K++EKFE+ A  L +   +KL+LDC TR
Sbjct: 333 VIGDGIERIRDSVYFWSATQKRIEKFEEAARHLAIDCSKKLSLDCKTR 380

BLAST of Lcy11g013850 vs. ExPASy TrEMBL
Match: A0A5C7IVC5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_001607 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 0

Query: 1   MDWNIDRKLYAMIVDNCCTNDSMVHMLLDRLSR-NLMLDGILFHMRCCVHILNLIVKDEL 60
           MDWNIDRKL ++ VDNC TN  M+  LL++L+  +L+L+G LFHMRCC HILNLIVKD L
Sbjct: 160 MDWNIDRKLSSITVDNCSTNKQMIPSLLEKLNNSDLILNGTLFHMRCCAHILNLIVKDGL 219

Query: 61  TVIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
            VIG+GIER+R+SV +W  TPK++EKFE TA QLN+   ++L LDC TR
Sbjct: 220 DVIGEGIERIRSSVLYWVATPKRIEKFEDTARQLNIPYSKRLVLDCPTR 268

BLAST of Lcy11g013850 vs. ExPASy TrEMBL
Match: A0A5C7IUL5 (BED-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001606 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 68/109 (62.39%), Postives = 86/109 (78.90%), Query Frame = 0

Query: 1   MDWNIDRKLYAMIVDNCCTNDSMVHMLLDRLSR-NLMLDGILFHMRCCVHILNLIVKDEL 60
           MDWNIDRKL ++ VDNC TN  M+  LL++L+  +L+L+G LFHMRCC HILNLIVKD L
Sbjct: 238 MDWNIDRKLSSITVDNCSTNKQMITSLLEKLNNSDLILNGTLFHMRCCAHILNLIVKDGL 297

Query: 61  TVIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
            VIG+GIER+R+SV +W  TPK++EKFE TA QLN+   ++L LDC TR
Sbjct: 298 DVIGEGIERIRSSVLYWVATPKRIEKFEDTARQLNIPYSKRLVLDCPTR 346

BLAST of Lcy11g013850 vs. NCBI nr
Match: XP_038882263.1 (zinc finger BED domain-containing protein RICESLEEPER 1-like [Benincasa hispida])

HSP 1 Score: 160.2 bits (404), Expect = 9.8e-36
Identity = 75/108 (69.44%), Postives = 91/108 (84.26%), Query Frame = 0

Query: 1   MDWNIDRKLYAMIVDNCCTNDSMVHMLLDRLSRNLMLDGILFHMRCCVHILNLIVKDELT 60
           +DWNIDRKL ++ VDNC TN+SMV+ML+D L  NL+LDG LFHMRCC HI+NLIVKD L 
Sbjct: 69  LDWNIDRKLSSVTVDNCSTNNSMVNMLVDSLCGNLILDGSLFHMRCCAHIINLIVKDRLA 128

Query: 61  VIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
           +I DGIERVR+SV+FW +T KK EKFE+TA QLNV+ G+ L+LDCCTR
Sbjct: 129 MIVDGIERVRSSVSFWVHTQKKNEKFEETARQLNVYDGQMLSLDCCTR 176

BLAST of Lcy11g013850 vs. NCBI nr
Match: KAE8658736.1 (hypothetical protein F3Y22_tig00116970pilonHSYRG00133 [Hibiscus syriacus])

HSP 1 Score: 148.3 bits (373), Expect = 3.9e-32
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 0

Query: 2   DWNIDRKLYAMIVDNCCTNDSMVHMLLDRLSRN-LMLDGILFHMRCCVHILNLIVKDELT 61
           DWNIDRK+  + VDNC TND M+H+LLD+LS N L+L G LFHMRCC HILNLIV+D L+
Sbjct: 247 DWNIDRKISTVTVDNCSTNDLMIHLLLDKLSLNSLILGGELFHMRCCAHILNLIVQDGLS 306

Query: 62  VIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
           VIGDGIER+R+SV FWS T K++EKFE+ A  L +   +KL+LDC TR
Sbjct: 307 VIGDGIERIRDSVYFWSATQKRIEKFEEAARHLTIDCSKKLSLDCKTR 354

BLAST of Lcy11g013850 vs. NCBI nr
Match: KAE8709865.1 (hypothetical protein F3Y22_tig00110328pilonHSYRG00714 [Hibiscus syriacus])

HSP 1 Score: 148.3 bits (373), Expect = 3.9e-32
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 0

Query: 2   DWNIDRKLYAMIVDNCCTNDSMVHMLLDRLSRN-LMLDGILFHMRCCVHILNLIVKDELT 61
           DWNIDRK+  + VDNC TND M+H+LLD+LS N L+L G LFHMRCC HILNLIV+D L+
Sbjct: 331 DWNIDRKISTVTVDNCSTNDLMIHLLLDKLSLNSLILGGELFHMRCCAHILNLIVQDGLS 390

Query: 62  VIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
           VIGDGIER+R+SV FWS T K++EKFE+ A  L +   +KL+LDC TR
Sbjct: 391 VIGDGIERIRDSVYFWSATQKRIEKFEEAARHLTIDCSKKLSLDCKTR 438

BLAST of Lcy11g013850 vs. NCBI nr
Match: KAE8662422.1 (hypothetical protein F3Y22_tig00113337pilonHSYRG00037 [Hibiscus syriacus])

HSP 1 Score: 147.5 bits (371), Expect = 6.6e-32
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 0

Query: 2   DWNIDRKLYAMIVDNCCTNDSMVHMLLDRLSRN-LMLDGILFHMRCCVHILNLIVKDELT 61
           DWNIDRK+  + VDNC TND M+H+LLD+LS N L+L G LFHMRCC HILNLIV+D L+
Sbjct: 273 DWNIDRKISTVTVDNCSTNDLMIHLLLDKLSLNSLILGGELFHMRCCAHILNLIVQDGLS 332

Query: 62  VIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
           VIGDGIER+R+SV FWS T K++EKFE+ A  L +   +KL+LDC TR
Sbjct: 333 VIGDGIERIRDSVYFWSATQKRIEKFEEAARHLAIDCSKKLSLDCKTR 380

BLAST of Lcy11g013850 vs. NCBI nr
Match: XP_039032840.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Hibiscus syriacus])

HSP 1 Score: 147.5 bits (371), Expect = 6.6e-32
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 0

Query: 2   DWNIDRKLYAMIVDNCCTNDSMVHMLLDRLSRN-LMLDGILFHMRCCVHILNLIVKDELT 61
           DWNIDRK+  + VDNC TND M+H+LLD+LS N L+L G LFHMRCC HILNLIV+D L+
Sbjct: 202 DWNIDRKISTVTVDNCSTNDLMIHLLLDKLSLNSLILGGELFHMRCCAHILNLIVQDGLS 261

Query: 62  VIGDGIERVRNSVAFWSNTPKKLEKFEKTAHQLNVHIGRKLALDCCTR 109
           VIGDGIER+R+SV FWS T K++EKFE+ A  L +   +KL+LDC TR
Sbjct: 262 VIGDGIERIRDSVYFWSATQKRIEKFEEAARHLAIDCSKKLSLDCKTR 309

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P087709.9e-1536.70Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2[more]
P030109.9e-1536.70Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1[more]
Q6AVI04.6e-1239.09Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j... [more]
B9FJG31.7e-1139.09Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. j... [more]
Q75HY54.0e-0831.53Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. j... [more]
Match NameE-valueIdentityDescription
A0A6A2X9E91.9e-3264.81Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116970pilon... [more]
A0A6A3B3F81.9e-3264.81BED-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00... [more]
A0A6A2WP443.2e-3264.81BED-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00... [more]
A0A5C7IVC52.1e-3162.39Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_001607 PE=4 SV=1[more]
A0A5C7IUL52.1e-3162.39BED-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001606... [more]
Match NameE-valueIdentityDescription
XP_038882263.19.8e-3669.44zinc finger BED domain-containing protein RICESLEEPER 1-like [Benincasa hispida][more]
KAE8658736.13.9e-3264.81hypothetical protein F3Y22_tig00116970pilonHSYRG00133 [Hibiscus syriacus][more]
KAE8709865.13.9e-3264.81hypothetical protein F3Y22_tig00110328pilonHSYRG00714 [Hibiscus syriacus][more]
KAE8662422.16.6e-3264.81hypothetical protein F3Y22_tig00113337pilonHSYRG00037 [Hibiscus syriacus][more]
XP_039032840.16.6e-3264.81zinc finger BED domain-containing protein RICESLEEPER 2-like [Hibiscus syriacus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23272BED FINGER-RELATEDcoord: 1..107
NoneNo IPR availablePANTHERPTHR23272:SF148ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKEcoord: 1..107
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g013850.1Lcy11g013850.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009791 post-embryonic development
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0046983 protein dimerization activity