Lcy11g013270 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g013270
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNA-directed DNA polymerase (reverse transcriptase)-related family protein
Location	Chr11: 20765701 .. 20766075 (+)
RNA-Seq Expression	Lcy11g013270
Synteny	Lcy11g013270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCGTTGGTTGGCCCGTTCTGTTGCATCTTATGTCGGAAGGCAGAGGAAGATTTGGACCATATCCTGTGGAATTGCCAGTTTGCCCGTTCAGTGTGGAGTTTCTTTTTTGACGCGTTCTGGATTCAAGCAAGACGATTAAAAGACTACAGGGAGATGATCCAGGAGTTCCTCCTCCATCTGCCGTTTCGCGATAAGGGGAGGTTTTTATGGTTAGCTGGGGTGTGCGTTGTTTTATGGGGTCTTTGGGGTGAGAGAAACAGTAGGGTTTTTCGTGGTACTGAGAGAGATCCTTCTGATGTATGGGCCCTCACTAGATTCTATGTTTCTCTTTGGACCTTAGTGTCAAAGGCTTTTGTAATTATACGCTAG

mRNA sequence

ATGACTTCGTTGGTTGGCCCGTTCTGTTGCATCTTATGTCGGAAGGCAGAGGAAGATTTGGACCATATCCTGTGGAATTGCCAGTTTGCCCGTTCAGTGTGGAGTTTCTTTTTTGACGCGTTCTGGATTCAAGCAAGACGATTAAAAGACTACAGGGAGATGATCCAGGAGTTCCTCCTCCATCTGCCGTTTCGCGATAAGGGGAGGTTTTTATGGTTAGCTGGGGTGTGCGTTGTTTTATGGGGTCTTTGGGGTGAGAGAAACAGTAGGGTTTTTCGTGGTACTGAGAGAGATCCTTCTGATGTATGGGCCCTCACTAGATTCTATGTTTCTCTTTGGACCTTAGTGTCAAAGGCTTTTGTAATTATACGCTAG

Coding sequence (CDS)

ATGACTTCGTTGGTTGGCCCGTTCTGTTGCATCTTATGTCGGAAGGCAGAGGAAGATTTGGACCATATCCTGTGGAATTGCCAGTTTGCCCGTTCAGTGTGGAGTTTCTTTTTTGACGCGTTCTGGATTCAAGCAAGACGATTAAAAGACTACAGGGAGATGATCCAGGAGTTCCTCCTCCATCTGCCGTTTCGCGATAAGGGGAGGTTTTTATGGTTAGCTGGGGTGTGCGTTGTTTTATGGGGTCTTTGGGGTGAGAGAAACAGTAGGGTTTTTCGTGGTACTGAGAGAGATCCTTCTGATGTATGGGCCCTCACTAGATTCTATGTTTCTCTTTGGACCTTAGTGTCAAAGGCTTTTGTAATTATACGCTAG

Protein sequence

MTSLVGPFCCILCRKAEEDLDHILWNCQFARSVWSFFFDAFWIQARRLKDYREMIQEFLLHLPFRDKGRFLWLAGVCVVLWGLWGERNSRVFRGTERDPSDVWALTRFYVSLWTLVSKAFVIIR

Homology

[Close]

BLAST of Lcy11g013270 vs. ExPASy TrEMBL
Match: A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 50/103 (48.54%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 18  EDLDHILWNCQFARSVWSFFFDAFWIQARRLKDYREMIQEFLLHLPFRDKGRFLWLAGVC 77
           EDLDH+L +   A  +W  F   F +   R +D R MI+EFLL+LP  ++GRFLW A VC
Sbjct: 54  EDLDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACVC 113

Query: 78  VVLWGLWGERNSRVFRGTERDPSDVWALTRFYVSLWTLVSKAF 121
            +LW LW E N RVF G ER   ++W + R++VSLW  +SK F
Sbjct: 114 AILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWDSISKTF 156

[Close]

BLAST of Lcy11g013270 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.5e-20
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 39  DAFWIQARRLKDYREMIQEFLLHLPFRDKGRFLWLAGVCVVLWGLWGERNSRVFRGTERD 98
           D F +     +D R M + F+LH PF++KGRFLWLA VC ++W +WGERN RVFRG +RD
Sbjct: 298 DEFDVSIAGQRDVRAMTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRGKDRD 357

Query: 99  PSDVWALTRFYVSLWTLVSKAF 121
            S++ +L RF+VSLWT VSK F
Sbjct: 358 LSEIGSLVRFHVSLWTSVSKLF 379

[Close]

BLAST of Lcy11g013270 vs. ExPASy TrEMBL
Match: A0A5D3CHC7 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00440 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 1   MTSLVGPFCCILCRKAEEDLDHILWNCQFARSVWSFF---FDAFWIQARRLKDYREMIQE 60
           MT LVGPF C LC+KA+EDLD++ W+CQ  R+VW+ F   FD+ ++  R +   R  I+E
Sbjct: 150 MTLLVGPFSCFLCQKAKEDLDNLFWDCQHERAVWNSFLQEFDSIFVGQRSV---RVTIEE 209

Query: 61  FLLHLPFRDKGRFLWLAGVCVVL 81
           FLLH PFR+K   LWLAGVC V+
Sbjct: 210 FLLHPPFREKWCILWLAGVCAVI 229

[Close]

BLAST of Lcy11g013270 vs. ExPASy TrEMBL
Match: A0A5A7VGR5 (Mitochondrial phosphate carrier protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00280 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 29  FARSVWSFFFDAFWIQARRLKDYREMIQEFLLHLPFRDKGRFLWLAGVCVVLWGLWGERN 88
           FAR VWS FF  F       +  R MI+EFLLH PFRDKG FLWLAGVC V+W +WG+RN
Sbjct: 324 FARVVWSSFFQEFGNSFAGTRSVRAMIEEFLLHSPFRDKGSFLWLAGVCAVMWDIWGKRN 383

Query: 89  SRVFRG 95
            RV RG
Sbjct: 384 DRVLRG 389

[Close]

BLAST of Lcy11g013270 vs. ExPASy TrEMBL
Match: A0A5D3DJ76 (SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 54  MIQEFLLHLPFRDKGRFLWLAGVCVVLWGLWGERNSRVFRGTERDPSDVWALTR 108
           +I EFLL LP R+KG FLW  GVC V+W LWGERN+RVFRG ER+P +VW+L R
Sbjct: 33  VIGEFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVEREPCEVWSLVR 86

[Close]

BLAST of Lcy11g013270 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 5.4e-22
Identity = 50/103 (48.54%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 18  EDLDHILWNCQFARSVWSFFFDAFWIQARRLKDYREMIQEFLLHLPFRDKGRFLWLAGVC 77
           EDLDH+L +   A  +W  F   F +   R +D R MI+EFLL+LP  ++GRFLW A VC
Sbjct: 54  EDLDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACVC 113

Query: 78  VVLWGLWGERNSRVFRGTERDPSDVWALTRFYVSLWTLVSKAF 121
            +LW LW E N RVF G ER   ++W + R++VSLW  +SK F
Sbjct: 114 AILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWDSISKTF 156

[Close]

BLAST of Lcy11g013270 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 5.1e-20
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 39  DAFWIQARRLKDYREMIQEFLLHLPFRDKGRFLWLAGVCVVLWGLWGERNSRVFRGTERD 98
           D F +     +D R M + F+LH PF++KGRFLWLA VC ++W +WGERN RVFRG +RD
Sbjct: 298 DEFDVSIAGQRDVRAMTEGFILHPPFKEKGRFLWLAEVCAIMWDIWGERNDRVFRGKDRD 357

Query: 99  PSDVWALTRFYVSLWTLVSKAF 121
            S++ +L RF+VSLWT VSK F
Sbjct: 358 LSEIGSLVRFHVSLWTSVSKLF 379

[Close]

BLAST of Lcy11g013270 vs. NCBI nr
Match: TYK11201.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-16
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 1   MTSLVGPFCCILCRKAEEDLDHILWNCQFARSVWSFF---FDAFWIQARRLKDYREMIQE 60
           MT LVGPF C LC+KA+EDLD++ W+CQ  R+VW+ F   FD+ ++  R +   R  I+E
Sbjct: 150 MTLLVGPFSCFLCQKAKEDLDNLFWDCQHERAVWNSFLQEFDSIFVGQRSV---RVTIEE 209

Query: 61  FLLHLPFRDKGRFLWLAGVCVVL 81
           FLLH PFR+K   LWLAGVC V+
Sbjct: 210 FLLHPPFREKWCILWLAGVCAVI 229

[Close]

BLAST of Lcy11g013270 vs. NCBI nr
Match: KAA0066908.1 (mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 29  FARSVWSFFFDAFWIQARRLKDYREMIQEFLLHLPFRDKGRFLWLAGVCVVLWGLWGERN 88
           FAR VWS FF  F       +  R MI+EFLLH PFRDKG FLWLAGVC V+W +WG+RN
Sbjct: 324 FARVVWSSFFQEFGNSFAGTRSVRAMIEEFLLHSPFRDKGSFLWLAGVCAVMWDIWGKRN 383

Query: 89  SRVFRG 95
            RV RG
Sbjct: 384 DRVLRG 389

[Close]

BLAST of Lcy11g013270 vs. NCBI nr
Match: TYK23653.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-14
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 54  MIQEFLLHLPFRDKGRFLWLAGVCVVLWGLWGERNSRVFRGTERDPSDVWALTR 108
           +I EFLL LP R+KG FLW  GVC V+W LWGERN+RVFRG ER+P +VW+L R
Sbjct: 33  VIGEFLLRLPLREKGCFLWCVGVCAVIWNLWGERNNRVFRGVEREPCEVWSLVR 86

[Close]

BLAST of Lcy11g013270 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 27/87 (31.03%), Postives = 41/87 (47.13%), Query Frame = 0


Query: 7   PFCCILCRKAEEDLDHILWNCQFARSVWSFF-FDAFWIQARRLKDYREMIQEFLLHLPFR 66
           P  C+LC   +E   H+ ++C F+  VWSFF  +A     R  KD    ++      P R
Sbjct: 281 PSLCLLCNALDETRQHVFFDCPFSHEVWSFFCSNARVTPPRMFKDSARWLRH-----PCR 340

Query: 67  DKG-RFLWLAGVCVVLWGLWGERNSRV 92
           DK   F+        ++ +W ERN R+
Sbjct: 341 DKKVAFILKLAYQASVYHIWRERNIRL 362

[Close]

BLAST of Lcy11g013270 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-05
Identity = 31/113 (27.43%), Postives = 48/113 (42.48%), Query Frame = 0


Query: 10  CILCRKAEEDLDHILWNCQFARSVWSFFFDAFWIQARRLKDYREMIQEFLLHLPFRDKGR 69
           CI C   +E ++H+L+ C FAR  W+       I      ++ + I   L  +     G 
Sbjct: 295 CIRCPSCKETVNHLLFKCTFARLTWAISS----IPIPLGGEWADSIYVNLYWVFNLGNGN 354

Query: 70  FLWLAGVCVV---LWGLWGERNSRVFRGTERDPSDVWALTRFYVSLWTLVSKA 120
             W     +V   LW LW  RN  VFRG E +  +V       +  W + ++A
Sbjct: 355 PQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEA 403

[Close]

BLAST of Lcy11g013270 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-05
Identity = 28/98 (28.57%), Postives = 45/98 (45.92%), Query Frame = 0


Query: 10  CILCRKAEEDLDHILWNCQFARSVWSF-----FFDAFWIQARRLKDYREMIQEFLLHLPF 69
           C+ C  + E ++H+L+ C FAR VW+      + +  W  +     Y  +     L +  
Sbjct: 12  CVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSL----YANLYWVLNLEVEI 71

Query: 70  RDKGRFLWLAGVCVVLWGLWGERNSRVFRGTERDPSDV 103
              G+   L  V  +LW LW  RN  +F+G E D  +V
Sbjct: 72  PKLGKIGNL--VPWLLWRLWKSRNELMFKGKEYDAPEV 103

[Close]

BLAST of Lcy11g013270 vs. TAIR 10
Match: AT5G18880.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 23/97 (23.71%), Postives = 41/97 (42.27%), Query Frame = 0


Query: 7   PFCCILCRKAEEDLDHILWNCQFARSVWSFFFDAFWIQARRLKDY-REMIQEFLLHLPFR 66
           P   +LC   +E   H+ + C F+ ++W FF   F    R    +       ++L LP R
Sbjct: 166 PSSWVLCSNGDETHAHLFFECSFSLAIWEFFASKF----RPSPPFGLPAASSWILQLPLR 225

Query: 67  DKGRFLWLAGVCVVLWGLWGERNSRVFRGTERDPSDV 103
                +    +   ++ +W ERN+R+F       S +
Sbjct: 226 SHSTTILKLLLQSAVYHVWKERNARIFTSISSSASSL 258

[Close]

BLAST of Lcy11g013270 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.9e-04
Identity = 26/106 (24.53%), Postives = 46/106 (43.40%), Query Frame = 0


Query: 7   PFCCILCRKAEEDLDHILWNCQFARSVWSFFFDAFWIQARRLKDYREMIQ--EFLLHLPF 66
           P  C+LC   ++   H+ + CQF+  VW FF       +  L    +++    +LL  P 
Sbjct: 168 PAECLLCNAHDDSRAHLFFECQFSGVVWRFF-----TASTNLNPPAQLMDCLNWLLS-PS 227

Query: 67  RDKGRFLWLAGVCVVL--------WGLWGERNSRVFRGTERDPSDV 103
           R+K        +C+++        + +W ERN R+  G  R    +
Sbjct: 228 REK-------NICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESI 260

The following BLAST results are available for this feature:

BLAST of Lcy11g013270 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g013270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DXB1	2.6e-22	48.54	uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=...	[more]
A0A5D3D7T2	2.5e-20	56.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CHC7	1.6e-16	54.22	SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00440 PE=4 SV=1	[more]
A0A5A7VGR5	1.4e-15	62.12	Mitochondrial phosphate carrier protein 3 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3DJ76	1.2e-14	66.67	SIL1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00180 PE=4 SV=1	[more]

BLAST of Lcy11g013270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900613.1	5.4e-22	48.54	PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo]	[more]
TYK19563.1	5.1e-20	56.10	uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa]	[more]
TYK11201.1	3.4e-16	54.22	SIL1 [Cucumis melo var. makuwa]	[more]
KAA0066908.1	2.9e-15	62.12	mitochondrial phosphate carrier protein 3 [Cucumis melo var. makuwa]	[more]
TYK23653.1	2.4e-14	66.67	SIL1 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy11g013270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45063.1	1.3e-05	31.03	copper ion binding;electron carriers	[more]
AT4G29090.1	2.9e-05	27.43	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	3.8e-05	28.57	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G18880.1	1.1e-04	23.71	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G04650.1	1.9e-04	24.53	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g013270.1	Lcy11g013270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003677	DNA binding