Lcy11g013260 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g013260
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationChr11: 20739085 .. 20739834 (-)
RNA-Seq ExpressionLcy11g013260
SyntenyLcy11g013260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTCAGTTGGTTAGGAACTTGAAAGACGACGAAGCTGCTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTACTGATTTGTGGAAATGGCCTCTTAGCACAAACGGTCACTTCTCCACAAAGTCTTTGATGGCCGATATGGGAGACTTATCCTCCCATTTGGAGACTCAATTAGTTTGGGTTATTTGGAAAGATACATACCCAAAGAAGATCAAATTCTTCCTTTGGGGAGTGGCTCATAGGGCAATTAGTACGAAAGACAATTTACAGAGACGCATGCCTACATTGGCCTTATCCCCAAGCTGGTGTTCTTTATGCAAGCAAGATGATGAAACCCTTGATCACTTATTCATCCATTGTCCATTTGCATGGGGTTTTTGGACTAAAATTCTTTCAACTTTTGGGTGGAATTTGGCTTTTACAGGAGACATCAAAAGCACTCTTCATTCCATCTTGTTGGGCCACCCTTTTAAGGATATTAAAGCGGTTTTATGGACACACATTATAAGAGCTTTTTTCTGGGTCTTATGGAAGGAAAGGAATCATAGAGTCTTCAACGATAAAGAGCTTCCCTTCATAGAGTTTTTCGACATTGCCATTTTCAATGCTATTTCTTGGTGTAAATCATCTAGTATCTTTGATTCATACTCTTATGTTTCCCTTTTATCAAATTGGGAAGGCCTTTTGTAA

mRNA sequence

ATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTCAGTTGGTTAGGAACTTGAAAGACGACGAAGCTGCTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTACTGATTTGTGGAAATGGCCTCTTAGCACAAACGGTCACTTCTCCACAAAGTCTTTGATGGCCGATATGGGAGACTTATCCTCCCATTTGGAGACTCAATTAGTTTGGGTTATTTGGAAAGATACATACCCAAAGAAGATCAAATTCTTCCTTTGGGGAGTGGCTCATAGGGCAATTAGTACGAAAGACAATTTACAGAGACGCATGCCTACATTGGCCTTATCCCCAAGCTGGTGTTCTTTATGCAAGCAAGATGATGAAACCCTTGATCACTTATTCATCCATTGTCCATTTGCATGGGGTTTTTGGACTAAAATTCTTTCAACTTTTGGGTGGAATTTGGCTTTTACAGGAGACATCAAAAGCACTCTTCATTCCATCTTGTTGGGCCACCCTTTTAAGGATATTAAAGCGGTTTTATGGACACACATTATAAGAGCTTTTTTCTGGGTCTTATGGAAGGAAAGGAATCATAGAGTCTTCAACGATAAAGAGCTTCCCTTCATAGAGTTTTTCGACATTGCCATTTTCAATGCTATTTCTTGGTGTAAATCATCTAGTATCTTTGATTCATACTCTTATGTTTCCCTTTTATCAAATTGGGAAGGCCTTTTGTAA

Coding sequence (CDS)

ATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTCAGTTGGTTAGGAACTTGAAAGACGACGAAGCTGCTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTACTGATTTGTGGAAATGGCCTCTTAGCACAAACGGTCACTTCTCCACAAAGTCTTTGATGGCCGATATGGGAGACTTATCCTCCCATTTGGAGACTCAATTAGTTTGGGTTATTTGGAAAGATACATACCCAAAGAAGATCAAATTCTTCCTTTGGGGAGTGGCTCATAGGGCAATTAGTACGAAAGACAATTTACAGAGACGCATGCCTACATTGGCCTTATCCCCAAGCTGGTGTTCTTTATGCAAGCAAGATGATGAAACCCTTGATCACTTATTCATCCATTGTCCATTTGCATGGGGTTTTTGGACTAAAATTCTTTCAACTTTTGGGTGGAATTTGGCTTTTACAGGAGACATCAAAAGCACTCTTCATTCCATCTTGTTGGGCCACCCTTTTAAGGATATTAAAGCGGTTTTATGGACACACATTATAAGAGCTTTTTTCTGGGTCTTATGGAAGGAAAGGAATCATAGAGTCTTCAACGATAAAGAGCTTCCCTTCATAGAGTTTTTCGACATTGCCATTTTCAATGCTATTTCTTGGTGTAAATCATCTAGTATCTTTGATTCATACTCTTATGTTTCCCTTTTATCAAATTGGGAAGGCCTTTTGTAA

Protein sequence

MVKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTKSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLALSPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFKDIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSYVSLLSNWEGLL
Homology
BLAST of Lcy11g013260 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.2e-35
Identity = 77/246 (31.30%), Postives = 127/246 (51.63%), Query Frame = 0

Query: 2    VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTK 61
            VKD+WN +   W++ + R L+D E   W  +   L   +  +      W L++N  F T 
Sbjct: 788  VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTA 847

Query: 62   SLMADMGDLS---SHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
            S+  D+ + S   ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P   L
Sbjct: 848  SIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 907

Query: 122  SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
            SP+WC +C +  E ++HLFIHCP++   W+K  +   WN +   D+KS   +I      K
Sbjct: 908  SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVKSLAQNI-CSLNIK 967

Query: 182  DIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSY 241
              K ++  + I    W +W ERN+R+F  ++  F + ++  +     W   S +F +Y  
Sbjct: 968  TQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNYDC 1027

Query: 242  VSLLSN 245
             S+  N
Sbjct: 1028 CSIALN 1031

BLAST of Lcy11g013260 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.2e-35
Identity = 77/246 (31.30%), Postives = 127/246 (51.63%), Query Frame = 0

Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTK 61
           VKD+WN +   W++ + R L+D E   W  +   L   +  +      W L++N  F T 
Sbjct: 694 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTA 753

Query: 62  SLMADMGDLS---SHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
           S+  D+ + S   ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P   L
Sbjct: 754 SIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 813

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN +   D+KS   +I      K
Sbjct: 814 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVKSLAQNI-CSLNIK 873

Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSY 241
             K ++  + I    W +W ERN+R+F  ++  F + ++  +     W   S +F +Y  
Sbjct: 874 TQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNYDC 933

Query: 242 VSLLSN 245
            S+  N
Sbjct: 934 CSIALN 937

BLAST of Lcy11g013260 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.6e-32
Identity = 74/246 (30.08%), Postives = 126/246 (51.22%), Query Frame = 0

Query: 2    VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTK 61
            VK+ WN + + W L + R L+D E   W  +   L   + ++      W L++N  F T 
Sbjct: 896  VKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTA 955

Query: 62   SL---MADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
            S+   +A+     ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P   L
Sbjct: 956  SVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 1015

Query: 122  SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
            SP+WC +C +  E ++HLFIHCP++   W+K  +   WN   T D++S + +I      +
Sbjct: 1016 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWNSTPT-DVQSLIQNI-CSLNIR 1075

Query: 182  DIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSY 241
            + K ++  +      W +W ERN+R+F  +E    + ++  +     W   S +F +Y  
Sbjct: 1076 NQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFSNYDC 1135

Query: 242  VSLLSN 245
             S+  N
Sbjct: 1136 CSIALN 1139

BLAST of Lcy11g013260 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-30
Identity = 80/267 (29.96%), Postives = 131/267 (49.06%), Query Frame = 0

Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFST- 61
           VKD WN + + W L + R L+D E   W  +   L   + ++      W L++N  F T 
Sbjct: 239 VKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTA 298

Query: 62  --KSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
             K ++++     ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P  AL
Sbjct: 299 SVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWAL 358

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN   T D++S + +I      +
Sbjct: 359 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPT-DVQSLVQNI-CSLNIR 418

Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDK------------------ELPFIEFFDIAI 241
           + K ++  +      W +W ERN+R+F  +                    PFI F  I++
Sbjct: 419 NQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFSCPFIRFLWISL 478

Query: 242 FN-AISWCKSSSIFDSYSYVSLLSNWE 247
            +   SW  +   F+ YS    +  WE
Sbjct: 479 LSFGESWHNNHHAFE-YSARVGIEWWE 502

BLAST of Lcy11g013260 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-30
Identity = 80/267 (29.96%), Postives = 131/267 (49.06%), Query Frame = 0

Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFST- 61
           VKD WN + + W L + R L+D E   W  +   L   + ++      W L++N  F T 
Sbjct: 196 VKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTA 255

Query: 62  --KSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
             K ++++     ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P  AL
Sbjct: 256 SVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWAL 315

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN   T D++S + +I      +
Sbjct: 316 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPT-DVQSLVQNI-CSLNIR 375

Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDK------------------ELPFIEFFDIAI 241
           + K ++  +      W +W ERN+R+F  +                    PFI F  I++
Sbjct: 376 NQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFSCPFIRFLWISL 435

Query: 242 FN-AISWCKSSSIFDSYSYVSLLSNWE 247
            +   SW  +   F+ YS    +  WE
Sbjct: 436 LSFGESWHNNHHAFE-YSARVGIEWWE 459

BLAST of Lcy11g013260 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 8.6e-35
Identity = 77/246 (31.30%), Postives = 127/246 (51.63%), Query Frame = 0

Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTK 61
           VKD+WN +   W++ + R L+D E   W  +   L   +  +      W L++N  F T 
Sbjct: 694 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTA 753

Query: 62  SLMADMGDLS---SHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
           S+  D+ + S   ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P   L
Sbjct: 754 SIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 813

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN +   D+KS   +I      K
Sbjct: 814 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVKSLAQNI-CSLNIK 873

Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSY 241
             K ++  + I    W +W ERN+R+F  ++  F + ++  +     W   S +F +Y  
Sbjct: 874 TQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNYDC 933

Query: 242 VSLLSN 245
            S+  N
Sbjct: 934 CSIALN 937

BLAST of Lcy11g013260 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 8.6e-35
Identity = 77/246 (31.30%), Postives = 127/246 (51.63%), Query Frame = 0

Query: 2    VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTK 61
            VKD+WN +   W++ + R L+D E   W  +   L   +  +      W L++N  F T 
Sbjct: 788  VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTA 847

Query: 62   SLMADMGDLS---SHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
            S+  D+ + S   ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P   L
Sbjct: 848  SIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 907

Query: 122  SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
            SP+WC +C +  E ++HLFIHCP++   W+K  +   WN +   D+KS   +I      K
Sbjct: 908  SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVKSLAQNI-CSLNIK 967

Query: 182  DIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSY 241
              K ++  + I    W +W ERN+R+F  ++  F + ++  +     W   S +F +Y  
Sbjct: 968  TQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNYDC 1027

Query: 242  VSLLSN 245
             S+  N
Sbjct: 1028 CSIALN 1031

BLAST of Lcy11g013260 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-31
Identity = 74/246 (30.08%), Postives = 126/246 (51.22%), Query Frame = 0

Query: 2    VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTK 61
            VK+ WN + + W L + R L+D E   W  +   L   + ++      W L++N  F T 
Sbjct: 896  VKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTA 955

Query: 62   SL---MADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
            S+   +A+     ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P   L
Sbjct: 956  SVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 1015

Query: 122  SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
            SP+WC +C +  E ++HLFIHCP++   W+K  +   WN   T D++S + +I      +
Sbjct: 1016 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWNSTPT-DVQSLIQNI-CSLNIR 1075

Query: 182  DIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSY 241
            + K ++  +      W +W ERN+R+F  +E    + ++  +     W   S +F +Y  
Sbjct: 1076 NQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFSNYDC 1135

Query: 242  VSLLSN 245
             S+  N
Sbjct: 1136 CSIALN 1139

BLAST of Lcy11g013260 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 3.7e-30
Identity = 80/267 (29.96%), Postives = 131/267 (49.06%), Query Frame = 0

Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFST- 61
           VKD WN + + W L + R L+D E   W  +   L   + ++      W L++N  F T 
Sbjct: 239 VKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTA 298

Query: 62  --KSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
             K ++++     ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P  AL
Sbjct: 299 SVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWAL 358

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN   T D++S + +I      +
Sbjct: 359 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPT-DVQSLVQNI-CSLNIR 418

Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDK------------------ELPFIEFFDIAI 241
           + K ++  +      W +W ERN+R+F  +                    PFI F  I++
Sbjct: 419 NQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFSCPFIRFLWISL 478

Query: 242 FN-AISWCKSSSIFDSYSYVSLLSNWE 247
            +   SW  +   F+ YS    +  WE
Sbjct: 479 LSFGESWHNNHHAFE-YSARVGIEWWE 502

BLAST of Lcy11g013260 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 3.7e-30
Identity = 80/267 (29.96%), Postives = 131/267 (49.06%), Query Frame = 0

Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFST- 61
           VKD WN + + W L + R L+D E   W  +   L   + ++      W L++N  F T 
Sbjct: 196 VKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTA 255

Query: 62  --KSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
             K ++++     ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P  AL
Sbjct: 256 SVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWAL 315

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN   T D++S + +I      +
Sbjct: 316 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPT-DVQSLVQNI-CSLNIR 375

Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDK------------------ELPFIEFFDIAI 241
           + K ++  +      W +W ERN+R+F  +                    PFI F  I++
Sbjct: 376 NQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFSCPFIRFLWISL 435

Query: 242 FN-AISWCKSSSIFDSYSYVSLLSNWE 247
            +   SW  +   F+ YS    +  WE
Sbjct: 436 LSFGESWHNNHHAFE-YSARVGIEWWE 459

BLAST of Lcy11g013260 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-11
Identity = 45/129 (34.88%), Postives = 58/129 (44.96%), Query Frame = 0

Query: 82  IWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLALSPSWCSLCKQDDETLDHLFIHCP 141
           IWK     KIK FLW +   A++T DNL+RR      +   C  C Q+DET  HLF  C 
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRH---IRNHPQCHRCCQEDETSQHLFFDCF 77

Query: 142 FAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFKDIKAVLWTHIIRAFFWVLWKERN 201
           +A   W +        L  TG    T   +LL     + +  L+   I    W LWK RN
Sbjct: 78  YAQQVW-RASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAI-WILWRLWKSRN 137

Query: 202 HRVFNDKEL 211
             VF  K +
Sbjct: 138 QLVFQQKSI 141

BLAST of Lcy11g013260 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers )

HSP 1 Score: 50.4 bits (119), Expect = 2.3e-06
Identity = 32/93 (34.41%), Postives = 44/93 (47.31%), Query Frame = 0

Query: 120 PSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFKD 179
           PS C LC   DET  H+F  CPF+   W    S F  N   T        +  L HP +D
Sbjct: 281 PSLCLLCNALDETRQHVFFDCPFSHEVW----SFFCSNARVTPPRMFKDSARWLRHPCRD 340

Query: 180 IK-AVLWTHIIRAFFWVLWKERNHRVFNDKELP 212
            K A +     +A  + +W+ERN R+ ++K  P
Sbjct: 341 KKVAFILKLAYQASVYHIWRERNIRLNSNKSFP 369

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TIB84.2e-3531.30LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TR154.2e-3531.30LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9I75.6e-3230.08LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TSA71.8e-3029.96LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3E1E31.8e-3029.96LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
KAA0044556.18.6e-3531.30LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041397.18.6e-3531.30LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0039950.11.2e-3130.08LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... [more]
KAA0044451.13.7e-3029.96LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK29578.13.7e-3029.96LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT3G25270.11.9e-1134.88Ribonuclease H-like superfamily protein [more]
AT1G45063.12.3e-0634.41copper ion binding;electron carriers [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 76..147
e-value: 5.5E-18
score: 65.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g013260.1Lcy11g013260.1mRNA