Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTCAGTTGGTTAGGAACTTGAAAGACGACGAAGCTGCTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTACTGATTTGTGGAAATGGCCTCTTAGCACAAACGGTCACTTCTCCACAAAGTCTTTGATGGCCGATATGGGAGACTTATCCTCCCATTTGGAGACTCAATTAGTTTGGGTTATTTGGAAAGATACATACCCAAAGAAGATCAAATTCTTCCTTTGGGGAGTGGCTCATAGGGCAATTAGTACGAAAGACAATTTACAGAGACGCATGCCTACATTGGCCTTATCCCCAAGCTGGTGTTCTTTATGCAAGCAAGATGATGAAACCCTTGATCACTTATTCATCCATTGTCCATTTGCATGGGGTTTTTGGACTAAAATTCTTTCAACTTTTGGGTGGAATTTGGCTTTTACAGGAGACATCAAAAGCACTCTTCATTCCATCTTGTTGGGCCACCCTTTTAAGGATATTAAAGCGGTTTTATGGACACACATTATAAGAGCTTTTTTCTGGGTCTTATGGAAGGAAAGGAATCATAGAGTCTTCAACGATAAAGAGCTTCCCTTCATAGAGTTTTTCGACATTGCCATTTTCAATGCTATTTCTTGGTGTAAATCATCTAGTATCTTTGATTCATACTCTTATGTTTCCCTTTTATCAAATTGGGAAGGCCTTTTGTAA
mRNA sequence
ATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTCAGTTGGTTAGGAACTTGAAAGACGACGAAGCTGCTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTACTGATTTGTGGAAATGGCCTCTTAGCACAAACGGTCACTTCTCCACAAAGTCTTTGATGGCCGATATGGGAGACTTATCCTCCCATTTGGAGACTCAATTAGTTTGGGTTATTTGGAAAGATACATACCCAAAGAAGATCAAATTCTTCCTTTGGGGAGTGGCTCATAGGGCAATTAGTACGAAAGACAATTTACAGAGACGCATGCCTACATTGGCCTTATCCCCAAGCTGGTGTTCTTTATGCAAGCAAGATGATGAAACCCTTGATCACTTATTCATCCATTGTCCATTTGCATGGGGTTTTTGGACTAAAATTCTTTCAACTTTTGGGTGGAATTTGGCTTTTACAGGAGACATCAAAAGCACTCTTCATTCCATCTTGTTGGGCCACCCTTTTAAGGATATTAAAGCGGTTTTATGGACACACATTATAAGAGCTTTTTTCTGGGTCTTATGGAAGGAAAGGAATCATAGAGTCTTCAACGATAAAGAGCTTCCCTTCATAGAGTTTTTCGACATTGCCATTTTCAATGCTATTTCTTGGTGTAAATCATCTAGTATCTTTGATTCATACTCTTATGTTTCCCTTTTATCAAATTGGGAAGGCCTTTTGTAA
Coding sequence (CDS)
ATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTCAGTTGGTTAGGAACTTGAAAGACGACGAAGCTGCTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTACTGATTTGTGGAAATGGCCTCTTAGCACAAACGGTCACTTCTCCACAAAGTCTTTGATGGCCGATATGGGAGACTTATCCTCCCATTTGGAGACTCAATTAGTTTGGGTTATTTGGAAAGATACATACCCAAAGAAGATCAAATTCTTCCTTTGGGGAGTGGCTCATAGGGCAATTAGTACGAAAGACAATTTACAGAGACGCATGCCTACATTGGCCTTATCCCCAAGCTGGTGTTCTTTATGCAAGCAAGATGATGAAACCCTTGATCACTTATTCATCCATTGTCCATTTGCATGGGGTTTTTGGACTAAAATTCTTTCAACTTTTGGGTGGAATTTGGCTTTTACAGGAGACATCAAAAGCACTCTTCATTCCATCTTGTTGGGCCACCCTTTTAAGGATATTAAAGCGGTTTTATGGACACACATTATAAGAGCTTTTTTCTGGGTCTTATGGAAGGAAAGGAATCATAGAGTCTTCAACGATAAAGAGCTTCCCTTCATAGAGTTTTTCGACATTGCCATTTTCAATGCTATTTCTTGGTGTAAATCATCTAGTATCTTTGATTCATACTCTTATGTTTCCCTTTTATCAAATTGGGAAGGCCTTTTGTAA
Protein sequence
MVKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTKSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLALSPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFKDIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSYVSLLSNWEGLL
Homology
BLAST of Lcy11g013260 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 4.2e-35
Identity = 77/246 (31.30%), Postives = 127/246 (51.63%), Query Frame = 0
Query: 2 VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTK 61
VKD+WN + W++ + R L+D E W + L + + W L++N F T
Sbjct: 788 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTA 847
Query: 62 SLMADMGDLS---SHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
S+ D+ + S ++ L +WK +PKK KFF+W + H I+T D LQ+R+P L
Sbjct: 848 SIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 907
Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
SP+WC +C + E ++HLFIHCP++ W+K + WN + D+KS +I K
Sbjct: 908 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVKSLAQNI-CSLNIK 967
Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSY 241
K ++ + I W +W ERN+R+F ++ F + ++ + W S +F +Y
Sbjct: 968 TQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNYDC 1027
Query: 242 VSLLSN 245
S+ N
Sbjct: 1028 CSIALN 1031
BLAST of Lcy11g013260 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 4.2e-35
Identity = 77/246 (31.30%), Postives = 127/246 (51.63%), Query Frame = 0
Query: 2 VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTK 61
VKD+WN + W++ + R L+D E W + L + + W L++N F T
Sbjct: 694 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTA 753
Query: 62 SLMADMGDLS---SHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
S+ D+ + S ++ L +WK +PKK KFF+W + H I+T D LQ+R+P L
Sbjct: 754 SIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 813
Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
SP+WC +C + E ++HLFIHCP++ W+K + WN + D+KS +I K
Sbjct: 814 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVKSLAQNI-CSLNIK 873
Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSY 241
K ++ + I W +W ERN+R+F ++ F + ++ + W S +F +Y
Sbjct: 874 TQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNYDC 933
Query: 242 VSLLSN 245
S+ N
Sbjct: 934 CSIALN 937
BLAST of Lcy11g013260 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 147.9 bits (372), Expect = 5.6e-32
Identity = 74/246 (30.08%), Postives = 126/246 (51.22%), Query Frame = 0
Query: 2 VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTK 61
VK+ WN + + W L + R L+D E W + L + ++ W L++N F T
Sbjct: 896 VKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTA 955
Query: 62 SL---MADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
S+ +A+ ++ L +WK +PKK KFF+W + H I+T D LQ+R+P L
Sbjct: 956 SVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 1015
Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
SP+WC +C + E ++HLFIHCP++ W+K + WN T D++S + +I +
Sbjct: 1016 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWNSTPT-DVQSLIQNI-CSLNIR 1075
Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSY 241
+ K ++ + W +W ERN+R+F +E + ++ + W S +F +Y
Sbjct: 1076 NQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFSNYDC 1135
Query: 242 VSLLSN 245
S+ N
Sbjct: 1136 CSIALN 1139
BLAST of Lcy11g013260 vs. ExPASy TrEMBL
Match:
A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)
HSP 1 Score: 142.9 bits (359), Expect = 1.8e-30
Identity = 80/267 (29.96%), Postives = 131/267 (49.06%), Query Frame = 0
Query: 2 VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFST- 61
VKD WN + + W L + R L+D E W + L + ++ W L++N F T
Sbjct: 239 VKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTA 298
Query: 62 --KSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
K ++++ ++ L +WK +PKK KFF+W + H I+T D LQ+R+P AL
Sbjct: 299 SVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWAL 358
Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
SP+WC +C + E ++HLFIHCP++ W+K + WN T D++S + +I +
Sbjct: 359 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPT-DVQSLVQNI-CSLNIR 418
Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDK------------------ELPFIEFFDIAI 241
+ K ++ + W +W ERN+R+F + PFI F I++
Sbjct: 419 NQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFSCPFIRFLWISL 478
Query: 242 FN-AISWCKSSSIFDSYSYVSLLSNWE 247
+ SW + F+ YS + WE
Sbjct: 479 LSFGESWHNNHHAFE-YSARVGIEWWE 502
BLAST of Lcy11g013260 vs. ExPASy TrEMBL
Match:
A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)
HSP 1 Score: 142.9 bits (359), Expect = 1.8e-30
Identity = 80/267 (29.96%), Postives = 131/267 (49.06%), Query Frame = 0
Query: 2 VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFST- 61
VKD WN + + W L + R L+D E W + L + ++ W L++N F T
Sbjct: 196 VKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTA 255
Query: 62 --KSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
K ++++ ++ L +WK +PKK KFF+W + H I+T D LQ+R+P AL
Sbjct: 256 SVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWAL 315
Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
SP+WC +C + E ++HLFIHCP++ W+K + WN T D++S + +I +
Sbjct: 316 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPT-DVQSLVQNI-CSLNIR 375
Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDK------------------ELPFIEFFDIAI 241
+ K ++ + W +W ERN+R+F + PFI F I++
Sbjct: 376 NQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFSCPFIRFLWISL 435
Query: 242 FN-AISWCKSSSIFDSYSYVSLLSNWE 247
+ SW + F+ YS + WE
Sbjct: 436 LSFGESWHNNHHAFE-YSARVGIEWWE 459
BLAST of Lcy11g013260 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 158.3 bits (399), Expect = 8.6e-35
Identity = 77/246 (31.30%), Postives = 127/246 (51.63%), Query Frame = 0
Query: 2 VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTK 61
VKD+WN + W++ + R L+D E W + L + + W L++N F T
Sbjct: 694 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTA 753
Query: 62 SLMADMGDLS---SHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
S+ D+ + S ++ L +WK +PKK KFF+W + H I+T D LQ+R+P L
Sbjct: 754 SIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 813
Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
SP+WC +C + E ++HLFIHCP++ W+K + WN + D+KS +I K
Sbjct: 814 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVKSLAQNI-CSLNIK 873
Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSY 241
K ++ + I W +W ERN+R+F ++ F + ++ + W S +F +Y
Sbjct: 874 TQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNYDC 933
Query: 242 VSLLSN 245
S+ N
Sbjct: 934 CSIALN 937
BLAST of Lcy11g013260 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 158.3 bits (399), Expect = 8.6e-35
Identity = 77/246 (31.30%), Postives = 127/246 (51.63%), Query Frame = 0
Query: 2 VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTK 61
VKD+WN + W++ + R L+D E W + L + + W L++N F T
Sbjct: 788 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTA 847
Query: 62 SLMADMGDLS---SHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
S+ D+ + S ++ L +WK +PKK KFF+W + H I+T D LQ+R+P L
Sbjct: 848 SIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 907
Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
SP+WC +C + E ++HLFIHCP++ W+K + WN + D+KS +I K
Sbjct: 908 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVKSLAQNI-CSLNIK 967
Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSY 241
K ++ + I W +W ERN+R+F ++ F + ++ + W S +F +Y
Sbjct: 968 TQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQTGLWSCKSKLFSNYDC 1027
Query: 242 VSLLSN 245
S+ N
Sbjct: 1028 CSIALN 1031
BLAST of Lcy11g013260 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 147.9 bits (372), Expect = 1.2e-31
Identity = 74/246 (30.08%), Postives = 126/246 (51.22%), Query Frame = 0
Query: 2 VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFSTK 61
VK+ WN + + W L + R L+D E W + L + ++ W L++N F T
Sbjct: 896 VKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTA 955
Query: 62 SL---MADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
S+ +A+ ++ L +WK +PKK KFF+W + H I+T D LQ+R+P L
Sbjct: 956 SVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 1015
Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
SP+WC +C + E ++HLFIHCP++ W+K + WN T D++S + +I +
Sbjct: 1016 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWNSTPT-DVQSLIQNI-CSLNIR 1075
Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDKELPFIEFFDIAIFNAISWCKSSSIFDSYSY 241
+ K ++ + W +W ERN+R+F +E + ++ + W S +F +Y
Sbjct: 1076 NQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGLWSCKSKLFSNYDC 1135
Query: 242 VSLLSN 245
S+ N
Sbjct: 1136 CSIALN 1139
BLAST of Lcy11g013260 vs. NCBI nr
Match:
KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 142.9 bits (359), Expect = 3.7e-30
Identity = 80/267 (29.96%), Postives = 131/267 (49.06%), Query Frame = 0
Query: 2 VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFST- 61
VKD WN + + W L + R L+D E W + L + ++ W L++N F T
Sbjct: 239 VKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTA 298
Query: 62 --KSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
K ++++ ++ L +WK +PKK KFF+W + H I+T D LQ+R+P AL
Sbjct: 299 SVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWAL 358
Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
SP+WC +C + E ++HLFIHCP++ W+K + WN T D++S + +I +
Sbjct: 359 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPT-DVQSLVQNI-CSLNIR 418
Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDK------------------ELPFIEFFDIAI 241
+ K ++ + W +W ERN+R+F + PFI F I++
Sbjct: 419 NQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFSCPFIRFLWISL 478
Query: 242 FN-AISWCKSSSIFDSYSYVSLLSNWE 247
+ SW + F+ YS + WE
Sbjct: 479 LSFGESWHNNHHAFE-YSARVGIEWWE 502
BLAST of Lcy11g013260 vs. NCBI nr
Match:
TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 142.9 bits (359), Expect = 3.7e-30
Identity = 80/267 (29.96%), Postives = 131/267 (49.06%), Query Frame = 0
Query: 2 VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQATDLWKWPLSTNGHFST- 61
VKD WN + + W L + R L+D E W + L + ++ W L++N F T
Sbjct: 196 VKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTA 255
Query: 62 --KSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
K ++++ ++ L +WK +PKK KFF+W + H I+T D LQ+R+P AL
Sbjct: 256 SVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWAL 315
Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
SP+WC +C + E ++HLFIHCP++ W+K + WN T D++S + +I +
Sbjct: 316 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPT-DVQSLVQNI-CSLNIR 375
Query: 182 DIKAVLWTHIIRAFFWVLWKERNHRVFNDK------------------ELPFIEFFDIAI 241
+ K ++ + W +W ERN+R+F + PFI F I++
Sbjct: 376 NQKGLITFNTSAILLWKIWLERNNRIFKQQGKDSQDLWEDILAQTGLFSCPFIRFLWISL 435
Query: 242 FN-AISWCKSSSIFDSYSYVSLLSNWE 247
+ SW + F+ YS + WE
Sbjct: 436 LSFGESWHNNHHAFE-YSARVGIEWWE 459
BLAST of Lcy11g013260 vs. TAIR 10
Match:
AT3G25270.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 67.4 bits (163), Expect = 1.9e-11
Identity = 45/129 (34.88%), Postives = 58/129 (44.96%), Query Frame = 0
Query: 82 IWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLALSPSWCSLCKQDDETLDHLFIHCP 141
IWK KIK FLW + A++T DNL+RR + C C Q+DET HLF C
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRH---IRNHPQCHRCCQEDETSQHLFFDCF 77
Query: 142 FAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFKDIKAVLWTHIIRAFFWVLWKERN 201
+A W + L TG T +LL + + L+ I W LWK RN
Sbjct: 78 YAQQVW-RASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAI-WILWRLWKSRN 137
Query: 202 HRVFNDKEL 211
VF K +
Sbjct: 138 QLVFQQKSI 141
BLAST of Lcy11g013260 vs. TAIR 10
Match:
AT1G45063.1 (copper ion binding;electron carriers )
HSP 1 Score: 50.4 bits (119), Expect = 2.3e-06
Identity = 32/93 (34.41%), Postives = 44/93 (47.31%), Query Frame = 0
Query: 120 PSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFKD 179
PS C LC DET H+F CPF+ W S F N T + L HP +D
Sbjct: 281 PSLCLLCNALDETRQHVFFDCPFSHEVW----SFFCSNARVTPPRMFKDSARWLRHPCRD 340
Query: 180 IK-AVLWTHIIRAFFWVLWKERNHRVFNDKELP 212
K A + +A + +W+ERN R+ ++K P
Sbjct: 341 KKVAFILKLAYQASVYHIWRERNIRLNSNKSFP 369
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TIB8 | 4.2e-35 | 31.30 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TR15 | 4.2e-35 | 31.30 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7T9I7 | 5.6e-32 | 30.08 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TSA7 | 1.8e-30 | 29.96 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3E1E3 | 1.8e-30 | 29.96 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
KAA0044556.1 | 8.6e-35 | 31.30 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0041397.1 | 8.6e-35 | 31.30 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0039950.1 | 1.2e-31 | 30.08 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
KAA0044451.1 | 3.7e-30 | 29.96 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK29578.1 | 3.7e-30 | 29.96 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT3G25270.1 | 1.9e-11 | 34.88 | Ribonuclease H-like superfamily protein | [more] |
AT1G45063.1 | 2.3e-06 | 34.41 | copper ion binding;electron carriers | [more] |