Lcy11g013070 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g013070
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionNon-specific serine/threonine protein kinase
LocationChr11: 19844722 .. 19845965 (-)
RNA-Seq ExpressionLcy11g013070
SyntenyLcy11g013070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAGGGCTTATCAGTATGTCAGATGTTTCAGCAACATGTTCTTTATTATGTTATGAGGATTCTGATTTGCAAGTGGCAAGTGGGTAGTGTATGGTTGCAACTAGAAATTGAAATTTTTAGCATGTTGAAGTTTACAACGTTGTTGATAAAACTTCCTTGTGTAAATAGTTTTGTTTTATGTAATTCCTTGATATTCATATTCTAACAGTGGTCTAAAATTTTATTTTTTGGAAGGCATGCTTTGATTTTGCACGCATTGTTGGATTGGTGATAGATGACGTCGTTCTTTATCAGCCTTTGATCCAGTCAATATCTACTATATTAAGTGAGGACAAGCAGGGGCTTCTTGTATTTAGGTATGTGTCGAATAAAAGAATGTGGGAAGTTGGCGACGTAATTGTTGGCATGGGGAAATCTATATTTCCGTATATTGCTTATCTGTTCATTTTAATTTGCCTATGGGTTCCTTTATTTTGTTATTTTCTTTATACTCTCTTTAATTAATCATTTGTTTATTAGGGGATATAGTGTACAATAGTTAGTTTGTAGTAGAGTAGGAAAACTCTACAAGTAGTGTACTATTTATCAGAGAAGAATGTAGATTTTTCTCACATGTTACCAAAACCAAAGATTGTCAAGCAGCATTTTCTTCTTATTCGAAATTTCTTTACTGTAGATTGGCATCAATTCTCATTTCAAGTTAACTCTACCATGGGCTGCGGCATGTTGATCAAAAGGAGAAGTTGAAAATTATGATGTCTTTGAGGTTTTTGAGTCCAACTCCAACCACATGCTTGAGATAACATTTTATTTAAACGTTCAAATGCTCTAGGGTTGAGCAATTATGTCTTGGTTTCAATCTGGAGTTGCTTAAGTTTGCCTTCACACAACAAATAAAAGAAATCCTATTCTTGTATTTCACTAGACTTAAGCTTCTATTAGTTGCTGTCAATGTTACGTGCTTTAGTTAATCTTTTATCTTTTTCTCCTGTTGGAAGAATGACTGATTTTTTTTTTCCGGCAAATAGCAGCTAATTTATTTACTCTGGCATTGTAATACTTCGTTTCTTTGGCAGGAACGTATCATATGATTCTTCTATTGGAGGCTGTCTTAATATGTTGTACTCCATCTGTTGCGATGATGTGGTCAAGCTAACTCAAGAATTGGAGAGAAGAGACCCTCTGAGGATTTGGATATTGTCAAGAACAAAAGACAGAAGGTCGATGAAGAAATTGTGA

mRNA sequence

ATGTTGAAGGGCTTATCAGTATGTCAGATGTTTCAGCAACATGTTCTTTATTATGTTATGAGGATTCTGATTTGCAAGTGGCAAGCATGCTTTGATTTTGCACGCATTGTTGGATTGGTGATAGATGACGTCGTTCTTTATCAGCCTTTGATCCAGTCAATATCTACTATATTAAGTGAGGACAAGCAGGGGCTTCTTGTATTTAGGAACGTATCATATGATTCTTCTATTGGAGGCTGTCTTAATATGTTGTACTCCATCTGTTGCGATGATGTGGTCAAGCTAACTCAAGAATTGGAGAGAAGAGACCCTCTGAGGATTTGGATATTGTCAAGAACAAAAGACAGAAGGTCGATGAAGAAATTGTGA

Coding sequence (CDS)

ATGTTGAAGGGCTTATCAGTATGTCAGATGTTTCAGCAACATGTTCTTTATTATGTTATGAGGATTCTGATTTGCAAGTGGCAAGCATGCTTTGATTTTGCACGCATTGTTGGATTGGTGATAGATGACGTCGTTCTTTATCAGCCTTTGATCCAGTCAATATCTACTATATTAAGTGAGGACAAGCAGGGGCTTCTTGTATTTAGGAACGTATCATATGATTCTTCTATTGGAGGCTGTCTTAATATGTTGTACTCCATCTGTTGCGATGATGTGGTCAAGCTAACTCAAGAATTGGAGAGAAGAGACCCTCTGAGGATTTGGATATTGTCAAGAACAAAAGACAGAAGGTCGATGAAGAAATTGTGA

Protein sequence

MLKGLSVCQMFQQHVLYYVMRILICKWQACFDFARIVGLVIDDVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSICCDDVVKLTQELERRDPLRIWILSRTKDRRSMKKL
Homology
[Close]
BLAST of Lcy11g013070 vs. ExPASy Swiss-Prot
Match: Q9FKS4 (Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana OX=3702 GN=ATR PE=2 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 5.4e-09
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 29  ACFDFARIVGLVID-DVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSI 88
           ACF+FA +VG ++  +++ +  LIQSI  +LS D +GL V+RN  YDS+IG  L  +YS 
Sbjct: 252 ACFEFATLVGSILTFNILPHVALIQSIILLLSAD-EGLPVYRNTIYDSTIGRFLTAVYSS 311

Query: 89  CCDDVVKLTQE 99
           C D  VKLT E
Sbjct: 312 CSDAAVKLTAE 321

[Close]
BLAST of Lcy11g013070 vs. ExPASy Swiss-Prot
Match: A2YH41 (Serine/threonine-protein kinase ATR OS=Oryza sativa subsp. indica OX=39946 GN=OsI_023634 PE=3 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-08
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 28  QACFDFARIVGLVID-DVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYS 87
           + CFDFARIV  VI  +++  + +I+SI  ILS+D  GL   R+  YD S+G CL+ L+S
Sbjct: 253 KVCFDFARIVATVITVEILPVENIIRSIMCILSQDVNGLSDIRDADYDFSMGACLHALHS 312

Query: 88  ICCDDVVKLT 97
            C   +V +T
Sbjct: 313 SCPGYIVAIT 322

[Close]
BLAST of Lcy11g013070 vs. ExPASy Swiss-Prot
Match: Q5Z987 (Serine/threonine-protein kinase ATR OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0724700 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-08
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 28  QACFDFARIVGLVID-DVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYS 87
           + CFDFARIV  VI  +++  + +I+SI  ILS+D  GL   R+  YD S+G CL+ L+S
Sbjct: 253 KVCFDFARIVATVITVEILPVENIIRSIMCILSQDVNGLSDIRDADYDFSMGACLHALHS 312

Query: 88  ICCDDVVKLT 97
            C   +V +T
Sbjct: 313 SCPGYIVAIT 322

[Close]
BLAST of Lcy11g013070 vs. ExPASy TrEMBL
Match: A0A5A7TB70 (Serine/threonine-protein kinase ATR OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold460G00250 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.3e-25
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 29  ACFDFARIVGLVIDDVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSIC 88
           ACFDFARIVGLVIDD+V YQPLIQSISTILSEDKQGL VFRN+ YD+SIGGCLN+LYS C
Sbjct: 250 ACFDFARIVGLVIDDIVPYQPLIQSISTILSEDKQGLPVFRNIPYDTSIGGCLNVLYSSC 309

Query: 89  CDDVVKLT 97
           CDDVVKLT
Sbjct: 310 CDDVVKLT 317

[Close]
BLAST of Lcy11g013070 vs. ExPASy TrEMBL
Match: A0A5D3DIJ1 (Serine/threonine-protein kinase ATR OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004480 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.3e-25
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 29  ACFDFARIVGLVIDDVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSIC 88
           ACFDFARIVGLVIDD+V YQPLIQSISTILSEDKQGL VFRN+ YD+SIGGCLN+LYS C
Sbjct: 250 ACFDFARIVGLVIDDIVPYQPLIQSISTILSEDKQGLPVFRNIPYDTSIGGCLNVLYSSC 309

Query: 89  CDDVVKLT 97
           CDDVVKLT
Sbjct: 310 CDDVVKLT 317

[Close]
BLAST of Lcy11g013070 vs. ExPASy TrEMBL
Match: A0A0A0K2M3 (Non-specific serine/threonine protein kinase OS=Cucumis sativus OX=3659 GN=Csa_7G017130 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.3e-25
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 29  ACFDFARIVGLVIDDVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSIC 88
           ACFDFARIVGLVIDD+V YQPLIQSISTILSEDKQGL VFRN+ YD+SIGGCLN+LYS C
Sbjct: 250 ACFDFARIVGLVIDDIVPYQPLIQSISTILSEDKQGLPVFRNIPYDNSIGGCLNVLYSNC 309

Query: 89  CDDVVKLT 97
           CDDVVKLT
Sbjct: 310 CDDVVKLT 317

[Close]
BLAST of Lcy11g013070 vs. ExPASy TrEMBL
Match: A0A6J1C607 (Non-specific serine/threonine protein kinase OS=Momordica charantia OX=3673 GN=LOC111007695 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.3e-25
Identity = 67/87 (77.01%), Postives = 73/87 (83.91%), Query Frame = 0 

Query: 29  ACFDFARIVGLVIDDVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSIC 88
           ACFDFARIV LVIDDVV +QPLIQSISTILSEDKQGL VFRNVSYD+SIGGCLN+LYS C
Sbjct: 251 ACFDFARIVALVIDDVVPHQPLIQSISTILSEDKQGLPVFRNVSYDNSIGGCLNVLYSNC 310

Query: 89  CDDVVKLT-QELERRDPLRIWILSRTK 115
           CDDVVKLT  ++    PL +W   RTK
Sbjct: 311 CDDVVKLTAADMVGVFPLSLW---RTK 334

[Close]
BLAST of Lcy11g013070 vs. ExPASy TrEMBL
Match: A0A6J1C3X0 (Non-specific serine/threonine protein kinase OS=Momordica charantia OX=3673 GN=LOC111007695 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.3e-25
Identity = 67/87 (77.01%), Postives = 73/87 (83.91%), Query Frame = 0 

Query: 29  ACFDFARIVGLVIDDVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSIC 88
           ACFDFARIV LVIDDVV +QPLIQSISTILSEDKQGL VFRNVSYD+SIGGCLN+LYS C
Sbjct: 251 ACFDFARIVALVIDDVVPHQPLIQSISTILSEDKQGLPVFRNVSYDNSIGGCLNVLYSNC 310

Query: 89  CDDVVKLT-QELERRDPLRIWILSRTK 115
           CDDVVKLT  ++    PL +W   RTK
Sbjct: 311 CDDVVKLTAADMVGVFPLSLW---RTK 334

[Close]
BLAST of Lcy11g013070 vs. NCBI nr
Match: KAA0040323.1 (serine/threonine-protein kinase ATR [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-25
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 29  ACFDFARIVGLVIDDVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSIC 88
           ACFDFARIVGLVIDD+V YQPLIQSISTILSEDKQGL VFRN+ YD+SIGGCLN+LYS C
Sbjct: 250 ACFDFARIVGLVIDDIVPYQPLIQSISTILSEDKQGLPVFRNIPYDTSIGGCLNVLYSSC 309

Query: 89  CDDVVKLT 97
           CDDVVKLT
Sbjct: 310 CDDVVKLT 317

[Close]
BLAST of Lcy11g013070 vs. NCBI nr
Match: TYK23382.1 (serine/threonine-protein kinase ATR [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 6.7e-25
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 29  ACFDFARIVGLVIDDVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSIC 88
           ACFDFARIVGLVIDD+V YQPLIQSISTILSEDKQGL VFRN+ YD+SIGGCLN+LYS C
Sbjct: 250 ACFDFARIVGLVIDDIVPYQPLIQSISTILSEDKQGLPVFRNIPYDTSIGGCLNVLYSSC 309

Query: 89  CDDVVKLT 97
           CDDVVKLT
Sbjct: 310 CDDVVKLT 317

[Close]
BLAST of Lcy11g013070 vs. NCBI nr
Match: XP_022135843.1 (serine/threonine-protein kinase ATR isoform X2 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 8.8e-25
Identity = 67/87 (77.01%), Postives = 73/87 (83.91%), Query Frame = 0 

Query: 29  ACFDFARIVGLVIDDVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSIC 88
           ACFDFARIV LVIDDVV +QPLIQSISTILSEDKQGL VFRNVSYD+SIGGCLN+LYS C
Sbjct: 251 ACFDFARIVALVIDDVVPHQPLIQSISTILSEDKQGLPVFRNVSYDNSIGGCLNVLYSNC 310

Query: 89  CDDVVKLT-QELERRDPLRIWILSRTK 115
           CDDVVKLT  ++    PL +W   RTK
Sbjct: 311 CDDVVKLTAADMVGVFPLSLW---RTK 334

[Close]
BLAST of Lcy11g013070 vs. NCBI nr
Match: XP_011658607.1 (serine/threonine-protein kinase ATR isoform X1 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 8.8e-25
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 29  ACFDFARIVGLVIDDVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSIC 88
           ACFDFARIVGLVIDD+V YQPLIQSISTILSEDKQGL VFRN+ YD+SIGGCLN+LYS C
Sbjct: 250 ACFDFARIVGLVIDDIVPYQPLIQSISTILSEDKQGLPVFRNIPYDNSIGGCLNVLYSNC 309

Query: 89  CDDVVKLT 97
           CDDVVKLT
Sbjct: 310 CDDVVKLT 317

[Close]
BLAST of Lcy11g013070 vs. NCBI nr
Match: KAE8645676.1 (hypothetical protein Csa_020374 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 8.8e-25
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 29  ACFDFARIVGLVIDDVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSIC 88
           ACFDFARIVGLVIDD+V YQPLIQSISTILSEDKQGL VFRN+ YD+SIGGCLN+LYS C
Sbjct: 250 ACFDFARIVGLVIDDIVPYQPLIQSISTILSEDKQGLPVFRNIPYDNSIGGCLNVLYSNC 309

Query: 89  CDDVVKLT 97
           CDDVVKLT
Sbjct: 310 CDDVVKLT 317

[Close]
BLAST of Lcy11g013070 vs. TAIR 10
Match: AT5G40820.1 (Ataxia telangiectasia-mutated and RAD3-related )

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-10
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 29  ACFDFARIVGLVID-DVVLYQPLIQSISTILSEDKQGLLVFRNVSYDSSIGGCLNMLYSI 88
           ACF+FA +VG ++  +++ +  LIQSI  +LS D +GL V+RN  YDS+IG  L  +YS 
Sbjct: 252 ACFEFATLVGSILTFNILPHVALIQSIILLLSAD-EGLPVYRNTIYDSTIGRFLTAVYSS 311

Query: 89  CCDDVVKLTQE 99
           C D  VKLT E
Sbjct: 312 CSDAAVKLTAE 321

The following BLAST results are available for this feature:
BLAST of Lcy11g013070 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FKS45.4e-0949.30Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana OX=3702 GN=ATR PE=2 ... [more]
A2YH416.0e-0844.29Serine/threonine-protein kinase ATR OS=Oryza sativa subsp. indica OX=39946 GN=Os... [more]
Q5Z9876.0e-0844.29Serine/threonine-protein kinase ATR OS=Oryza sativa subsp. japonica OX=39947 GN=... [more]
BLAST of Lcy11g013070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TB703.3e-2588.24Serine/threonine-protein kinase ATR OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3DIJ13.3e-2588.24Serine/threonine-protein kinase ATR OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A0A0K2M34.3e-2588.24Non-specific serine/threonine protein kinase OS=Cucumis sativus OX=3659 GN=Csa_7... [more]
A0A6J1C6074.3e-2577.01Non-specific serine/threonine protein kinase OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1C3X04.3e-2577.01Non-specific serine/threonine protein kinase OS=Momordica charantia OX=3673 GN=L... [more]
BLAST of Lcy11g013070 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040323.16.7e-2588.24serine/threonine-protein kinase ATR [Cucumis melo var. makuwa][more]
TYK23382.16.7e-2588.24serine/threonine-protein kinase ATR [Cucumis melo var. makuwa][more]
XP_022135843.18.8e-2577.01serine/threonine-protein kinase ATR isoform X2 [Momordica charantia][more]
XP_011658607.18.8e-2588.24serine/threonine-protein kinase ATR isoform X1 [Cucumis sativus][more]
KAE8645676.18.8e-2588.24hypothetical protein Csa_020374 [Cucumis sativus][more]
BLAST of Lcy11g013070 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G40820.13.8e-1049.30Ataxia telangiectasia-mutated and RAD3-related [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g013070.1Lcy11g013070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000077 DNA damage checkpoint signaling
biological_process GO:0006281 DNA repair
biological_process GO:0006468 protein phosphorylation
biological_process GO:0000723 telomere maintenance
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0106310 protein serine kinase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0004712 protein serine/threonine/tyrosine kinase activity