Lcy11g012870 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g012870
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNA-dependent RNA polymerase
Location	Chr11: 19190817 .. 19191478 (-)
RNA-Seq Expression	Lcy11g012870
Synteny	Lcy11g012870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTGAGCGGGTTCTTGCTATGTACACCAAGCCTCGGGGTCACAATGACGAGACATTAGAATTGTGGCTTGGTAGAGTGAGCTTTCGCTTCCTTATCTTCGAGGTTTCATTATCTCCTTCCTTCAACAAGAGATGAAACCTTCGGATTTAAAGGTGGCTCCTGATTAATTATTGGATTTCCAACAGAAAGAGTCCGGGACTTCCTTGAGTGGTCTTTGCTCAGGAACTGGATGAAGGATTGGCTTCGGTACGTCCATTGATTGGTACTGGAATGTCGCGAATTCACCGGATCTTTCCTTAAATGACTGATTTTCAGCATCAGTCTATGATAAAGAATGGAGGATCAGACGCGAATCGAGTGAGCTCATTCGCTTTGGTCTTCTCTGGAAGATCTATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACACCTCCCTGGATTTCGGGGATGGTTACTAGAAGGAGTCTCCGGCATTGATTTCTTAGTCGAGCCTGATGGTTTAACCGGCTTTGAAAGGGATCATCATAAGACTTTAGGCGCACCTGGGGGAAGGACTACCCTTTTTTTGAATATATGCAATTAA

mRNA sequence

ATGATAGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTGAGCGGGTTCTTGCTATGTACACCAAGCCTCGGGGTCACAATGACGAGACATTAGAATTGTGGCTTGGTAGAGTGAGCTTTCGCTTCCTTATCTTCGAGGAACTGGATGAAGGATTGGCTTCGGTACGTCCATTGATTGCATCAGTCTATGATAAAGAATGGAGGATCAGACGCGAATCGAGTGAGCTCATTCGCTTTGGTCTTCTCTGGAAGATCTATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACACCTCCCTGGATTTCGGGGATGGTTACTAGAAGGAGTCTCCGGCATTGATTTCTTAGTCGAGCCTGATGGTTTAACCGGCTTTGAAAGGGATCATCATAAGACTTTAGGCGCACCTGGGGGAAGGACTACCCTTTTTTTGAATATATGCAATTAA

Coding sequence (CDS)

ATGATAGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTGAGCGGGTTCTTGCTATGTACACCAAGCCTCGGGGTCACAATGACGAGACATTAGAATTGTGGCTTGGTAGAGTGAGCTTTCGCTTCCTTATCTTCGAGGAACTGGATGAAGGATTGGCTTCGGTACGTCCATTGATTGCATCAGTCTATGATAAAGAATGGAGGATCAGACGCGAATCGAGTGAGCTCATTCGCTTTGGTCTTCTCTGGAAGATCTATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACACCTCCCTGGATTTCGGGGATGGTTACTAGAAGGAGTCTCCGGCATTGATTTCTTAGTCGAGCCTGATGGTTTAACCGGCTTTGAAAGGGATCATCATAAGACTTTAGGCGCACCTGGGGGAAGGACTACCCTTTTTTTGAATATATGCAATTAA

Protein sequence

MIGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLGRVSFRFLIFEELDEGLASVRPLIASVYDKEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGLTGFERDHHKTLGAPGGRTTLFLNICN

Homology

[Close]

BLAST of Lcy11g012870 vs. ExPASy TrEMBL
Match: A0A5N6L0Z4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025340 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-18
Identity = 70/192 (36.46%), Postives = 91/192 (47.40%), Query Frame = 0


Query: 2   IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLGRVS-----FRFLIFEEL 61
           +GG GYRVLA+L H R+RH  RV AMYTKP      TLE WLGR +      R  I   L
Sbjct: 152 VGGAGYRVLARLDHYRNRHDSRVYAMYTKPLA--GPTLEWWLGRGAPLNPYLRAYIIHFL 211

Query: 62  DEGL-------------------------------------------ASVRP--LIASVY 121
            E +                                            +++P   I+S +
Sbjct: 212 REEMRPKELRLIPDDLFATEKVKDFLEWSILRSWMKEWLAYSHRYYGTAMQPDVQISSFF 271

Query: 122 D-----KEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVS 138
           D     + WRI R+ + L RFGLLW++YDLVA KGV++  P L+ HL    G WLL G+S
Sbjct: 272 DTAVLMRSWRIERKDANLTRFGLLWRVYDLVAVKGVSFRIPILEGHLVLSNGPWLLGGIS 331

[Close]

BLAST of Lcy11g012870 vs. ExPASy TrEMBL
Match: A0A6A1UKL6 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G017069 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-10
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 42  WLGRVSFRFLIFEELDEGLASVRPLIASVYDKEWRIRRESSELIRFGLLWKIYDLVAEKG 101
           WL  V + + +    D  L+      ASVY+K WRIRRESSELIRFGLLWKIYDLVAEKG
Sbjct: 35  WLRYVHWYWSVANSPDVSLSDF--FSASVYEKLWRIRRESSELIRFGLLWKIYDLVAEKG 94

Query: 102 VAWSP 107
           V+  P
Sbjct: 95  VSLEP 97

[Close]

BLAST of Lcy11g012870 vs. ExPASy TrEMBL
Match: A0A2Z6JSN1 (RNA-dependent RNA polymerase OS=Beta vulgaris mitovirus 1 OX=2080450 GN=RdRp PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-09
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 75  WRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPD 134
           W +R+ + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG DF+V   
Sbjct: 682 WNVRQTNEELVRFGVLWKCYDKVANLGLDWCPGALPESAGSLCGWILGGYSGSDFIVSSC 741

Query: 135 GL 137
           GL
Sbjct: 742 GL 743

[Close]

BLAST of Lcy11g012870 vs. ExPASy TrEMBL
Match: A0A482F2N2 (RNA-dependent RNA polymerase OS=Beta vulgaris mitovirus 1 OX=2080450 GN=RdRp PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-09
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 75  WRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPD 134
           W +R+ + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG DF+V   
Sbjct: 682 WNVRQTNEELVRFGVLWKCYDKVANLGLDWCPGALPESAGSLCGWILGGYSGSDFIVSSC 741

Query: 135 GL 137
           GL
Sbjct: 742 GL 743

[Close]

BLAST of Lcy11g012870 vs. ExPASy TrEMBL
Match: A0A2Z6JJR3 (RNA-dependent RNA polymerase OS=Beta vulgaris mitovirus 1 OX=2080450 GN=RdRp PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.5e-09
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 75  WRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPD 134
           W +R+ + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG DF+V   
Sbjct: 682 WNVRQTNEELVRFGVLWKCYDKVANLGLDWCPGALPESAGSLCGWILGGYSGSDFIVSSC 741

Query: 135 GL 137
           GL
Sbjct: 742 GL 743

[Close]

BLAST of Lcy11g012870 vs. NCBI nr
Match: KAF3452148.1 (hypothetical protein FNV43_RR08246 [Rhamnella rubrinervis] >KAF3452200.1 hypothetical protein FNV43_RR08298 [Rhamnella rubrinervis])

HSP 1 Score: 216.9 bits (551), Expect = 1.3e-52
Identity = 113/159 (71.07%), Postives = 118/159 (74.21%), Query Frame = 0


Query: 8   RVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLGRVSFRFLIFEE------------ 67
           RVLAKLSHTRSRHFERVLAMYTKPRGHND  LELWLGRVSFRFLIFE             
Sbjct: 148 RVLAKLSHTRSRHFERVLAMYTKPRGHNDYPLELWLGRVSFRFLIFESPGLPFLEWSLLR 207

Query: 68  --LDEGLASVR--------PLI-------ASVYDKEWRIRRESSELIRFGLLWKIYDLVA 127
             + + L  V         P +       ASVY+KEWRIRRESSELIRF LLWKIYDLVA
Sbjct: 208 NWMKDWLRYVHWYWSVANSPDVSLSDFFSASVYEKEWRIRRESSELIRFCLLWKIYDLVA 267

Query: 128 EKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPDGLT 138
           EKGVAWSPPCLQEHLPGFRGWLL GVSG+DFLVEPDG T
Sbjct: 268 EKGVAWSPPCLQEHLPGFRGWLLGGVSGMDFLVEPDGFT 306

[Close]

BLAST of Lcy11g012870 vs. NCBI nr
Match: KAB8477474.1 (hypothetical protein FH972_025340 [Carpinus fangiana])

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-18
Identity = 70/192 (36.46%), Postives = 91/192 (47.40%), Query Frame = 0


Query: 2   IGGGGYRVLAKLSHTRSRHFERVLAMYTKPRGHNDETLELWLGRVS-----FRFLIFEEL 61
           +GG GYRVLA+L H R+RH  RV AMYTKP      TLE WLGR +      R  I   L
Sbjct: 152 VGGAGYRVLARLDHYRNRHDSRVYAMYTKPLA--GPTLEWWLGRGAPLNPYLRAYIIHFL 211

Query: 62  DEGL-------------------------------------------ASVRP--LIASVY 121
            E +                                            +++P   I+S +
Sbjct: 212 REEMRPKELRLIPDDLFATEKVKDFLEWSILRSWMKEWLAYSHRYYGTAMQPDVQISSFF 271

Query: 122 D-----KEWRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRG-WLLEGVS 138
           D     + WRI R+ + L RFGLLW++YDLVA KGV++  P L+ HL    G WLL G+S
Sbjct: 272 DTAVLMRSWRIERKDANLTRFGLLWRVYDLVAVKGVSFRIPILEGHLVLSNGPWLLGGIS 331

[Close]

BLAST of Lcy11g012870 vs. NCBI nr
Match: KAF9618544.1 (hypothetical protein IFM89_002239 [Coptis chinensis])

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-15
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 2  IGGGGYRVLAKLSHTRSRHFERVLAMYTKPR-GHNDETLELWLGRVSFRF 51
          IGGGGYRVLAKL HTRSRHFERVLAMYTKPR GHND  LELWLG+VSFRF
Sbjct: 34 IGGGGYRVLAKLGHTRSRHFERVLAMYTKPRSGHNDYPLELWLGKVSFRF 83

[Close]

BLAST of Lcy11g012870 vs. NCBI nr
Match: KAB1199680.1 (hypothetical protein CJ030_MR0G017069 [Morella rubra] >KAB1205581.1 hypothetical protein CJ030_MR7G017753 [Morella rubra] >KAB1227960.1 hypothetical protein CJ030_MR1G013840 [Morella rubra] >KAB1227961.1 hypothetical protein CJ030_MR1G013841 [Morella rubra])

HSP 1 Score: 75.5 bits (184), Expect = 4.8e-10
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 42  WLGRVSFRFLIFEELDEGLASVRPLIASVYDKEWRIRRESSELIRFGLLWKIYDLVAEKG 101
           WL  V + + +    D  L+      ASVY+K WRIRRESSELIRFGLLWKIYDLVAEKG
Sbjct: 35  WLRYVHWYWSVANSPDVSLSDF--FSASVYEKLWRIRRESSELIRFGLLWKIYDLVAEKG 94

Query: 102 VAWSP 107
           V+  P
Sbjct: 95  VSLEP 97

[Close]

BLAST of Lcy11g012870 vs. NCBI nr
Match: DAB41758.1 (TPA_inf: RNA-dependent RNA polymerase [Beta vulgaris mitovirus 1])

HSP 1 Score: 72.0 bits (175), Expect = 5.3e-09
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 75  WRIRRESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPGFRGWLLEGVSGIDFLVEPD 134
           W +R+ + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG DF+V   
Sbjct: 682 WNVRQTNEELVRFGVLWKCYDKVANLGLDWCPGALPESAGSLCGWILGGYSGSDFIVSSC 741

Query: 135 GL 137
           GL
Sbjct: 742 GL 743

The following BLAST results are available for this feature:

BLAST of Lcy11g012870 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g012870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6L0Z4	1.3e-18	36.46	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025340 PE=4 SV=1	[more]
A0A6A1UKL6	2.3e-10	60.00	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G017069 PE=4 SV=1	[more]
A0A2Z6JSN1	2.5e-09	48.39	RNA-dependent RNA polymerase OS=Beta vulgaris mitovirus 1 OX=2080450 GN=RdRp PE=...	[more]
A0A482F2N2	2.5e-09	48.39	RNA-dependent RNA polymerase OS=Beta vulgaris mitovirus 1 OX=2080450 GN=RdRp PE=...	[more]
A0A2Z6JJR3	2.5e-09	48.39	RNA-dependent RNA polymerase OS=Beta vulgaris mitovirus 1 OX=2080450 GN=RdRp PE=...	[more]

BLAST of Lcy11g012870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3452148.1	1.3e-52	71.07	hypothetical protein FNV43_RR08246 [Rhamnella rubrinervis] >KAF3452200.1 hypothe...	[more]
KAB8477474.1	2.8e-18	36.46	hypothetical protein FH972_025340 [Carpinus fangiana]	[more]
KAF9618544.1	1.3e-15	90.00	hypothetical protein IFM89_002239 [Coptis chinensis]	[more]
KAB1199680.1	4.8e-10	60.00	hypothetical protein CJ030_MR0G017069 [Morella rubra] >KAB1205581.1 hypothetical...	[more]
DAB41758.1	5.3e-09	48.39	TPA_inf: RNA-dependent RNA polymerase [Beta vulgaris mitovirus 1]	[more]

BLAST of Lcy11g012870 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g012870.1	Lcy11g012870.1	mRNA