Lcy11g012670 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGACACCGCTCCCGCCTCCCCCCGTGCAAAATCAAAACTCTGTTTATCGATTCTCTGTTTTTGGGTTTGATCAGAGACAGACTCAGAGCCACCATGTCTTTCTTCTCCACGAATTCATGCCTCCAATACTCTATCCGCACCACTGGAAACAGCAGCGGCAATCAAATTCTGAAACTCCGATTAGGGCATTGTAGCCGCCTGATTTCTGGATTTCCACACCAAATCTTGCAGCAAACTCCGTCGACTCTGATGGGGGAGGCTCTGTTTCCTCTCTGTTTGAGGGAGCGTGAAGAAGAAATGCGGTTCCTGGCCCACTTTCGCGTGGTTGAGTTTCTGTGTTCGTTCAACTTCCGTAGCTCCGTCGGCGACGTTATCTTTGAGAAGATTGCCTCCGTTGCGGCGGGCGGCTTCAGCGTAGAGGCGGACATCGACTACGTGATGATGTTTTGGATGGAGGGAGAGGGCATCGGAGAGGAGGAGATTCCGATGGTTGAAGAAGGTGGAAGAGGGGCGCCAGAGTGGGCGATTGAGAGACTGATGGAGCAGAAATTTGATGGGATTGGGATTGGGATTGGGAAGGAGGATAGTTGCAGTGTGTGCTATGATGAACTAGAGAGCGGGAACGGAGAGGAGATGACGAAGATGCCTTGTGGACACGTGTATCACAAACCCTGCATTTTGACCTGGCTTCAAAGGAGCAACTCCTGCCCTAATTGTCGAAGCAAATTACAATAA ATGAGACACCGCTCCCGCCTCCCCCCGTGCAAAATCAAAACTCTGTTTATCGATTCTCTGTTTTTGGGTTTGATCAGAGACAGACTCAGAGCCACCATGTCTTTCTTCTCCACGAATTCATGCCTCCAATACTCTATCCGCACCACTGGAAACAGCAGCGGCAATCAAATTCTGAAACTCCGATTAGGGCATTGTAGCCGCCTGATTTCTGGATTTCCACACCAAATCTTGCAGCAAACTCCGTCGACTCTGATGGGGGAGGCTCTGTTTCCTCTCTGTTTGAGGGAGCGTGAAGAAGAAATGCGGTTCCTGGCCCACTTTCGCGTGGTTGAGTTTCTGTGTTCGTTCAACTTCCGTAGCTCCGTCGGCGACGTTATCTTTGAGAAGATTGCCTCCGTTGCGGCGGGCGGCTTCAGCGTAGAGGCGGACATCGACTACGTGATGATGTTTTGGATGGAGGGAGAGGGCATCGGAGAGGAGGAGATTCCGATGGTTGAAGAAGGTGGAAGAGGGGCGCCAGAGTGGGCGATTGAGAGACTGATGGAGCAGAAATTTGATGGGATTGGGATTGGGATTGGGAAGGAGGATAGTTGCAGTGTGTGCTATGATGAACTAGAGAGCGGGAACGGAGAGGAGATGACGAAGATGCCTTGTGGACACGTGTATCACAAACCCTGCATTTTGACCTGGCTTCAAAGGAGCAACTCCTGCCCTAATTGTCGAAGCAAATTACAATAA ATGAGACACCGCTCCCGCCTCCCCCCGTGCAAAATCAAAACTCTGTTTATCGATTCTCTGTTTTTGGGTTTGATCAGAGACAGACTCAGAGCCACCATGTCTTTCTTCTCCACGAATTCATGCCTCCAATACTCTATCCGCACCACTGGAAACAGCAGCGGCAATCAAATTCTGAAACTCCGATTAGGGCATTGTAGCCGCCTGATTTCTGGATTTCCACACCAAATCTTGCAGCAAACTCCGTCGACTCTGATGGGGGAGGCTCTGTTTCCTCTCTGTTTGAGGGAGCGTGAAGAAGAAATGCGGTTCCTGGCCCACTTTCGCGTGGTTGAGTTTCTGTGTTCGTTCAACTTCCGTAGCTCCGTCGGCGACGTTATCTTTGAGAAGATTGCCTCCGTTGCGGCGGGCGGCTTCAGCGTAGAGGCGGACATCGACTACGTGATGATGTTTTGGATGGAGGGAGAGGGCATCGGAGAGGAGGAGATTCCGATGGTTGAAGAAGGTGGAAGAGGGGCGCCAGAGTGGGCGATTGAGAGACTGATGGAGCAGAAATTTGATGGGATTGGGATTGGGATTGGGAAGGAGGATAGTTGCAGTGTGTGCTATGATGAACTAGAGAGCGGGAACGGAGAGGAGATGACGAAGATGCCTTGTGGACACGTGTATCACAAACCCTGCATTTTGACCTGGCTTCAAAGGAGCAACTCCTGCCCTAATTGTCGAAGCAAATTACAATAA MRHRSRLPPCKIKTLFIDSLFLGLIRDRLRATMSFFSTNSCLQYSIRTTGNSSGNQILKLRLGHCSRLISGFPHQILQQTPSTLMGEALFPLCLREREEEMRFLAHFRVVEFLCSFNFRSSVGDVIFEKIASVAAGGFSVEADIDYVMMFWMEGEGIGEEEIPMVEEGGRGAPEWAIERLMEQKFDGIGIGIGKEDSCSVCYDELESGNGEEMTKMPCGHVYHKPCILTWLQRSNSCPNCRSKLQ Homology
BLAST of Lcy11g012670 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 3.7e-09 Identity = 25/49 (51.02%), Postives = 33/49 (67.35%), Query Frame = 0
BLAST of Lcy11g012670 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 6.3e-09 Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0
BLAST of Lcy11g012670 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 8.3e-09 Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 0
BLAST of Lcy11g012670 vs. ExPASy Swiss-Prot
Match: Q9Y7K6 (Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.04c PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.4e-08 Identity = 19/48 (39.58%), Postives = 33/48 (68.75%), Query Frame = 0
BLAST of Lcy11g012670 vs. ExPASy Swiss-Prot
Match: Q8NG27 (E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens OX=9606 GN=PJA1 PE=1 SV=2) HSP 1 Score: 60.5 bits (145), Expect = 3.1e-08 Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0
BLAST of Lcy11g012670 vs. ExPASy TrEMBL
Match: A0A6J1G7L1 (NEP1-interacting protein-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111451601 PE=4 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 7.5e-37 Identity = 103/230 (44.78%), Postives = 132/230 (57.39%), Query Frame = 0
BLAST of Lcy11g012670 vs. ExPASy TrEMBL
Match: A0A6J1L387 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 1.6e-34 Identity = 97/224 (43.30%), Postives = 132/224 (58.93%), Query Frame = 0
BLAST of Lcy11g012670 vs. ExPASy TrEMBL
Match: A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 1.6e-34 Identity = 99/217 (45.62%), Postives = 136/217 (62.67%), Query Frame = 0
BLAST of Lcy11g012670 vs. ExPASy TrEMBL
Match: A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 7.7e-34 Identity = 95/217 (43.78%), Postives = 135/217 (62.21%), Query Frame = 0
BLAST of Lcy11g012670 vs. ExPASy TrEMBL
Match: A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33 Identity = 100/226 (44.25%), Postives = 132/226 (58.41%), Query Frame = 0
BLAST of Lcy11g012670 vs. NCBI nr
Match: XP_023539480.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 176.4 bits (446), Expect = 3.0e-40 Identity = 99/214 (46.26%), Postives = 139/214 (64.95%), Query Frame = 0
BLAST of Lcy11g012670 vs. NCBI nr
Match: XP_023539471.1 (uncharacterized protein LOC111800118 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 167.5 bits (423), Expect = 1.4e-37 Identity = 97/226 (42.92%), Postives = 138/226 (61.06%), Query Frame = 0
BLAST of Lcy11g012670 vs. NCBI nr
Match: XP_022947841.1 (NEP1-interacting protein-like 1 [Cucurbita moschata]) HSP 1 Score: 164.1 bits (414), Expect = 1.5e-36 Identity = 103/230 (44.78%), Postives = 132/230 (57.39%), Query Frame = 0
BLAST of Lcy11g012670 vs. NCBI nr
Match: KAG6605222.1 (E3 ubiquitin-protein ligase AMFR, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 164.1 bits (414), Expect = 1.5e-36 Identity = 103/230 (44.78%), Postives = 132/230 (57.39%), Query Frame = 0
BLAST of Lcy11g012670 vs. NCBI nr
Match: XP_038876917.1 (E3 ubiquitin-protein ligase DZIP3-like [Benincasa hispida] >XP_038876930.1 E3 ubiquitin-protein ligase DZIP3-like [Benincasa hispida]) HSP 1 Score: 160.6 bits (405), Expect = 1.7e-35 Identity = 109/240 (45.42%), Postives = 137/240 (57.08%), Query Frame = 0
BLAST of Lcy11g012670 vs. TAIR 10
Match: AT4G12210.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.5 bits (158), Expect = 6.9e-11 Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Lcy11g012670 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A ) HSP 1 Score: 62.8 bits (151), Expect = 4.5e-10 Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0
BLAST of Lcy11g012670 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A ) HSP 1 Score: 62.8 bits (151), Expect = 4.5e-10 Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0
BLAST of Lcy11g012670 vs. TAIR 10
Match: AT2G40830.3 (RING-H2 finger C1A ) HSP 1 Score: 62.8 bits (151), Expect = 4.5e-10 Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 0
BLAST of Lcy11g012670 vs. TAIR 10
Match: AT3G10815.1 (RING/U-box superfamily protein ) HSP 1 Score: 62.8 bits (151), Expect = 4.5e-10 Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
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