Lcy11g012520 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g012520
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr11: 17844355 .. 17844756 (-)
RNA-Seq ExpressionLcy11g012520
SyntenyLcy11g012520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCTATTCTAGAAGGGCTGATTAGTTTACCTGCTCTGCGAACAGTCCAAGCCGATTTGAAATTCCCTTCGAATATAGTGGAATCAGATGCCGTCGGTGTGATTAATCTCCTCAACAGCGAACAAGAGGATCTTTCCAAAGTGTCGTTCTTAGCTGTTGAGATCTCTCTTGCGAAATCCTTATTCGAGGATCTCCGTTTTGTTCATGCTCCTCGTGGATGTAATTTCTTTGCTCATAATTTGGCACGCATTGTGTACTGTAATTTCCCTAGAACGAACGTTTTTTTGGAATCCTCTTCTTCTTCAGAAGACGGATCGTGTTTTTGGTTTGGGGCCCCACCTCCTCAGGTTGTTGGGCTCATTAATTCTGTTGGTGTGGTTGCCCGTTTGGGCTTTTAA

mRNA sequence

ATGAAGGCTATTCTAGAAGGGCTGATTAGTTTACCTGCTCTGCGAACAGTCCAAGCCGATTTGAAATTCCCTTCGAATATAGTGGAATCAGATGCCGTCGGTGTGATTAATCTCCTCAACAGCGAACAAGAGGATCTTTCCAAAGTGTCGTTCTTAGCTGTTGAGATCTCTCTTGCGAAATCCTTATTCGAGGATCTCCGTTTTGTTCATGCTCCTCGTGGATGTAATTTCTTTGCTCATAATTTGGCACGCATTGTGTACTGTAATTTCCCTAGAACGAACGTTTTTTTGGAATCCTCTTCTTCTTCAGAAGACGGATCGTGTTTTTGGTTTGGGGCCCCACCTCCTCAGGTTGTTGGGCTCATTAATTCTGTTGGTGTGGTTGCCCGTTTGGGCTTTTAA

Coding sequence (CDS)

ATGAAGGCTATTCTAGAAGGGCTGATTAGTTTACCTGCTCTGCGAACAGTCCAAGCCGATTTGAAATTCCCTTCGAATATAGTGGAATCAGATGCCGTCGGTGTGATTAATCTCCTCAACAGCGAACAAGAGGATCTTTCCAAAGTGTCGTTCTTAGCTGTTGAGATCTCTCTTGCGAAATCCTTATTCGAGGATCTCCGTTTTGTTCATGCTCCTCGTGGATGTAATTTCTTTGCTCATAATTTGGCACGCATTGTGTACTGTAATTTCCCTAGAACGAACGTTTTTTTGGAATCCTCTTCTTCTTCAGAAGACGGATCGTGTTTTTGGTTTGGGGCCCCACCTCCTCAGGTTGTTGGGCTCATTAATTCTGTTGGTGTGGTTGCCCGTTTGGGCTTTTAA

Protein sequence

MKAILEGLISLPALRTVQADLKFPSNIVESDAVGVINLLNSEQEDLSKVSFLAVEISLAKSLFEDLRFVHAPRGCNFFAHNLARIVYCNFPRTNVFLESSSSSEDGSCFWFGAPPPQVVGLINSVGVVARLGF
Homology
The following BLAST results are available for this feature:
BLAST of Lcy11g012520 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy11g012520 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy11g012520 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy11g012520 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 19..84
e-value: 2.6E-7
score: 30.5
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 27..84
e-value: 1.30839E-10
score: 53.0868

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g012520.1Lcy11g012520.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity