Lcy11g011980 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g011980
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
LocationChr11: 15016836 .. 15017225 (-)
RNA-Seq ExpressionLcy11g011980
SyntenyLcy11g011980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAGAGTGGACTTCAAGGAGCCGGTCTGGTTCAAGGCCGGCGCCCAAATCTTCTCAGAAGGAGGGCTCGACTACCTGGGCAACCCGAACCTGGTCCACGCCCAGAGCATCCTGGCCGTGTTGGGCTTCCAAGTGGTCCTAATGGGCCTGGTCGAAGGCTTCCGCATCAACGGCCTGGACGGCGTCGGCGAGGGCAACGACCTGTACCCGGGCGGCCAGTACTTCGACCCACTCGGACTGGCCGACGACCCAGTCACCTTCGCCGAGCTCAAGGTCAAGGAGATCAAGAACGGCCGCCTCGCCATGTTCTCCATGTTCGGGTTCTTCGTTCAGGCCATCGTCACCGGGAAAGGCCCGCTCGAGAACCTACTCGACCATCTCGATAA

mRNA sequence

ATGGTTGAGAGTGGACTTCAAGGAGCCGGTCTGGTTCAAGGCCGGCGCCCAAATCTTCTCAGAAGGAGGGCTCGACTACCTGGGCAACCCGAACCTGGTCCACGCCCAGAGCATCCTGGCCGTGTTGGGCTTCCAAGTGGTCCTAATGGGCCTGGTCGAAGGCTTCCGCATCAACGGCCTGGACGGCGTCGGCGAGGGCAACGACCTGTACCCGGGCGGCCAGTACTTCGACCCACTCGGACTGGCCGACGACCCAGTCACCTTCGCCGAGCTCAAGGTCAAGGAGATCAAGAACGGCCGCCTCGCCATGTTCTCCATGTTCGGGTTCTTCGTTCAGGCCATCGTCACCGGGAAAGGCCCGCTCGAGAACCTACTCGACCATCTCGATAA

Coding sequence (CDS)

ATGGTTGAGAGTGGACTTCAAGGAGCCGGTCTGGTTCAAGGCCGGCGCCCAAATCTTCTCAGAAGGAGGGCTCGACTACCTGGGCAACCCGAACCTGGTCCACGCCCAGAGCATCCTGGCCGTGTTGGGCTTCCAAGTGGTCCTAATGGGCCTGGTCGAAGGCTTCCGCATCAACGGCCTGGACGGCGTCGGCGAGGGCAACGACCTGTACCCGGGCGGCCAGTACTTCGACCCACTCGGACTGGCCGACGACCCAGTCACCTTCGCCGAGCTCAAGGTCAAGGAGATCAAGAACGGCCGCCTCGCCATGTTCTCCATGTTCGGGTTCTTCGTTCAGGCCATCGTCACCGGGAAAGGCCCGCTCGAGAACCTACTCGACCATCTCGATAA

Protein sequence

MVESGLQGAGLVQGRRPNLLRRRARLPGQPEPGPRPEHPGRVGLPSGPNGPGRRLPHQRPGRRRRGQRPVPGRPVLRPTRTGRRPSHLRRAQGQGDQERPPRHVLHVRVLRSGHRHRERPAREPTRPSR
Homology
[Close]
BLAST of Lcy11g011980 vs. ExPASy TrEMBL
Match: A0A446TC85 (Chlorophyll a-b binding protein, chloroplastic OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_5Av1G191510 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 67/114 (58.77%), Postives = 76/114 (66.67%), Query Frame = 0 

Query: 17  PNLLRRRARLPGQPEPGPRPEHPGRVGLPSGPNGPGRRLP-HQRPGRRRRGQRPVPGRPV 76
           P+L R R RLP QP+PG R EHP  +GLP G +G    LP  +RP  R RG  P   R  
Sbjct: 96  PDLQRGRPRLPRQPQPGARAEHPRHLGLPGGAHGRRGGLPRRRRPAGRDRG--PALPRRQ 155

Query: 77  LRPTRTGRRPSHLRRAQGQGDQERPPRHVLHVRVLRSGHRHRERPAREPTRPSR 130
           LRP    R P  LR AQG+GDQERPPRHVLHVR+LR+GHRHR+ P REP RP R
Sbjct: 156 LRPPGPRRGPRGLRGAQGEGDQERPPRHVLHVRLLRAGHRHRQGPPREPRRPPR 207

[Close]
BLAST of Lcy11g011980 vs. ExPASy TrEMBL
Match: A0A446UHG3 (Chlorophyll a-b binding protein, chloroplastic OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_5Bv1G172390 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10
Identity = 50/83 (60.24%), Postives = 56/83 (67.47%), Query Frame = 0 

Query: 37  EHPGRVGLPSGPNGPGRRLPH-QRPGRRRRGQRPVPGRPVLRPTRTGRRPSHLRRAQGQG 96
           EHPG +G   G +G  R LP   RP   RRG R    R  LRPT   RRP H RRAQG+G
Sbjct: 132 EHPGHLGGSGGAHGLHRGLPRWWRP--PRRGPRHHLPRRRLRPTWPRRRPRHRRRAQGEG 191

Query: 97  DQERPPRHVLHVRVLRSGHRHRE 119
            QERPPRHVLHVR+LR+GHRHR+
Sbjct: 192 AQERPPRHVLHVRLLRAGHRHRK 212

[Close]
BLAST of Lcy11g011980 vs. ExPASy TrEMBL
Match: A0A446TAF4 (Chlorophyll a-b binding protein, chloroplastic OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_5Av1G183260 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-10
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 0 

Query: 37  EHPGRVGLPSGPNGPGRRLPHQRPGRRRRGQRPVPGRPVLRPTRTGRRPSHLRRAQGQGD 96
           EHP  +G   G +G  R LP      RR  +  +PGR  LRPT   RRP H RRAQG+G 
Sbjct: 132 EHPRHLGGAGGAHGLHRGLPCWWRAPRRGPRHHLPGRR-LRPTWPRRRPRHRRRAQGEGA 191

Query: 97  QERPPRHVLHVRVLRSGHRHRE 119
           QERPPRHVLHVR+LR+GHRHRE
Sbjct: 192 QERPPRHVLHVRLLRAGHRHRE 212

[Close]
BLAST of Lcy11g011980 vs. ExPASy TrEMBL
Match: M8B3C6 (Chlorophyll a-b binding protein, chloroplastic OS=Aegilops tauschii OX=37682 GN=F775_26158 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 91  AQGQGDQERPPRHVLHVRVLRSGHRHRERPAREPTRP 128
           AQG+GDQERPPRHVLHVR+LR+GHRHR+ P REP RP
Sbjct: 234 AQGEGDQERPPRHVLHVRLLRAGHRHRQGPPREPRRP 270

[Close]
BLAST of Lcy11g011980 vs. ExPASy TrEMBL
Match: A0A446UJ52 (Chlorophyll a-b binding protein, chloroplastic OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_5Bv1G183550 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 88  LRRAQGQGDQERPPRHVLHVRVLRSGHRHRERPAREPTRPSR 130
           +R AQG+GDQERPPRHVLHVR+LR+GHRHR+    EP RP R
Sbjct: 189 VRGAQGEGDQERPPRHVLHVRLLRAGHRHRQGAPGEPRRPPR 230

[Close]
BLAST of Lcy11g011980 vs. NCBI nr
Match: KAB8083260.1 (hypothetical protein EE612_005395 [Oryza sativa])

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 70/117 (59.83%), Postives = 81/117 (69.23%), Query Frame = 0 

Query: 11  LVQGRRPNLLRRRARLPGQPEPGPRPEHPGRVGLPSGPNGPGRRLPHQRPGRRRRGQRPV 70
           +VQG  P+L R  ARLP QP+P PR EHPG +GLP   +G  R +P +R    RRG+RP 
Sbjct: 130 VVQGGVPDLQRGGARLPRQPQPDPRAEHPGDLGLPGRAHGRRRGVPRRR-RPARRGRRPA 189

Query: 71  PGRPVLRPTRTGRRPSHLRRAQGQGDQERPPRHVLHVRVLRSGHRHRERPAREPTRP 128
             R  LRP R  RRP  +RRAQG+GDQERPPRHVLHVRVLR GHRHR+    EP RP
Sbjct: 190 LPRRQLRPARPRRRPRGVRRAQGEGDQERPPRHVLHVRVLRPGHRHRQGATGEPGRP 245

[Close]
BLAST of Lcy11g011980 vs. NCBI nr
Match: VAI20878.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 105.5 bits (262), Expect = 3.4e-19
Identity = 67/114 (58.77%), Postives = 76/114 (66.67%), Query Frame = 0 

Query: 17  PNLLRRRARLPGQPEPGPRPEHPGRVGLPSGPNGPGRRLP-HQRPGRRRRGQRPVPGRPV 76
           P+L R R RLP QP+PG R EHP  +GLP G +G    LP  +RP  R RG  P   R  
Sbjct: 96  PDLQRGRPRLPRQPQPGARAEHPRHLGLPGGAHGRRGGLPRRRRPAGRDRG--PALPRRQ 155

Query: 77  LRPTRTGRRPSHLRRAQGQGDQERPPRHVLHVRVLRSGHRHRERPAREPTRPSR 130
           LRP    R P  LR AQG+GDQERPPRHVLHVR+LR+GHRHR+ P REP RP R
Sbjct: 156 LRPPGPRRGPRGLRGAQGEGDQERPPRHVLHVRLLRAGHRHRQGPPREPRRPPR 207

[Close]
BLAST of Lcy11g011980 vs. NCBI nr
Match: KAG2547613.1 (hypothetical protein PVAP13_9KG113833 [Panicum virgatum])

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-11
Identity = 46/75 (61.33%), Postives = 53/75 (70.67%), Query Frame = 0 

Query: 55  LPHQRPGRRRRGQRPVPGRPVLRPTRTGRRPSHLRRAQGQGDQERPPRHVLHVRVLRSGH 114
           LP +R   R   ++ VPGR  LRP    RRP H R AQG+G QERPPRHVLHVR+LR+GH
Sbjct: 145 LPRRRRAARGGARQGVPGRR-LRPAGARRRPGHRRGAQGEGAQERPPRHVLHVRILRAGH 204

Query: 115 RHRERPAREPTRPSR 130
           RHR+ P REP RP R
Sbjct: 205 RHRQGPHREPLRPRR 218

[Close]
BLAST of Lcy11g011980 vs. NCBI nr
Match: VAI35054.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 75.5 bits (184), Expect = 3.8e-10
Identity = 50/83 (60.24%), Postives = 56/83 (67.47%), Query Frame = 0 

Query: 37  EHPGRVGLPSGPNGPGRRLPH-QRPGRRRRGQRPVPGRPVLRPTRTGRRPSHLRRAQGQG 96
           EHPG +G   G +G  R LP   RP   RRG R    R  LRPT   RRP H RRAQG+G
Sbjct: 132 EHPGHLGGSGGAHGLHRGLPRWWRP--PRRGPRHHLPRRRLRPTWPRRRPRHRRRAQGEG 191

Query: 97  DQERPPRHVLHVRVLRSGHRHRE 119
            QERPPRHVLHVR+LR+GHRHR+
Sbjct: 192 AQERPPRHVLHVRLLRAGHRHRK 212

[Close]
BLAST of Lcy11g011980 vs. NCBI nr
Match: VAI20351.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 75.1 bits (183), Expect = 5.0e-10
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 0 

Query: 37  EHPGRVGLPSGPNGPGRRLPHQRPGRRRRGQRPVPGRPVLRPTRTGRRPSHLRRAQGQGD 96
           EHP  +G   G +G  R LP      RR  +  +PGR  LRPT   RRP H RRAQG+G 
Sbjct: 132 EHPRHLGGAGGAHGLHRGLPCWWRAPRRGPRHHLPGRR-LRPTWPRRRPRHRRRAQGEGA 191

Query: 97  QERPPRHVLHVRVLRSGHRHRE 119
           QERPPRHVLHVR+LR+GHRHRE
Sbjct: 192 QERPPRHVLHVRLLRAGHRHRE 212

The following BLAST results are available for this feature:
BLAST of Lcy11g011980 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy11g011980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A446TC851.7e-1958.77Chlorophyll a-b binding protein, chloroplastic OS=Triticum turgidum subsp. durum... [more]
A0A446UHG31.8e-1060.24Chlorophyll a-b binding protein, chloroplastic OS=Triticum turgidum subsp. durum... [more]
A0A446TAF42.4e-1058.54Chlorophyll a-b binding protein, chloroplastic OS=Triticum turgidum subsp. durum... [more]
M8B3C61.5e-0781.08Chlorophyll a-b binding protein, chloroplastic OS=Aegilops tauschii OX=37682 GN=... [more]
A0A446UJ521.6e-0671.43Chlorophyll a-b binding protein, chloroplastic OS=Triticum turgidum subsp. durum... [more]
BLAST of Lcy11g011980 vs. NCBI nr
Match NameE-valueIdentityDescription
KAB8083260.15.6e-2259.83hypothetical protein EE612_005395 [Oryza sativa][more]
VAI20878.13.4e-1958.77unnamed protein product [Triticum turgidum subsp. durum][more]
KAG2547613.12.0e-1161.33hypothetical protein PVAP13_9KG113833 [Panicum virgatum][more]
VAI35054.13.8e-1060.24unnamed protein product [Triticum turgidum subsp. durum][more]
VAI20351.15.0e-1058.54unnamed protein product [Triticum turgidum subsp. durum][more]
BLAST of Lcy11g011980 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g011980.1Lcy11g011980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009523 photosystem II
molecular_function GO:0016168 chlorophyll binding