Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGAATGTTTCGATTTGCGAAACCCTTTTGGGGATTTGGTGAAATTTCGACATCTAATCGCCGATCCGAATGTGTTTTCGGCGATAATCAGTTTTGCCGGCGGCGGGATGGTGGCTGTAGGGCTATTGGGGTCGCCGGAGGATGATAAAAGCGTGAAGATATGGGAAATGGTGGTCCAATTTTCGAAATGGCGAGAAATTGGAGAAATGCTCAATTCGTTAGTTGAGAAATTGAGTGCAGAAATGGCGTCGATCGGCATGTCGTTGGCGGAAGATTTCATATTCCTTCACCCCGGTTCTGACCCGGTGGAGGTGATTCAGTGTGAGGTGGGTGGCGGCGGCGATGGCGGCTGTCGGTGGGCAATCGTGTCGAATACAATGGTGTTCACCAGCTCCAATGTCGGCGTCAGAGACTTGCAGAGGGCGTTGAGATCAAAAAGTCCACGAATCATGGTCAAGGTCAAGGATTTCGACAATGACTGA
mRNA sequence
ATGTTTGAATGTTTCGATTTGCGAAACCCTTTTGGGGATTTGGTGAAATTTCGACATCTAATCGCCGATCCGAATGTGTTTTCGGCGATAATCAGTTTTGCCGGCGGCGGGATGGTGGCTGTAGGGCTATTGGGGTCGCCGGAGGATGATAAAAGCGTGAAGATATGGGAAATGGTGGTCCAATTTTCGAAATGGCGAGAAATTGGAGAAATGCTCAATTCGTTAGTTGAGAAATTGAGTGCAGAAATGGCGTCGATCGGCATGTCGTTGGCGGAAGATTTCATATTCCTTCACCCCGGTTCTGACCCGGTGGAGGTGATTCAGTGTGAGGTGGGTGGCGGCGGCGATGGCGGCTGTCGGTGGGCAATCGTGTCGAATACAATGGTGTTCACCAGCTCCAATGTCGGCGTCAGAGACTTGCAGAGGGCGTTGAGATCAAAAAGTCCACGAATCATGGTCAAGGTCAAGGATTTCGACAATGACTGA
Coding sequence (CDS)
ATGTTTGAATGTTTCGATTTGCGAAACCCTTTTGGGGATTTGGTGAAATTTCGACATCTAATCGCCGATCCGAATGTGTTTTCGGCGATAATCAGTTTTGCCGGCGGCGGGATGGTGGCTGTAGGGCTATTGGGGTCGCCGGAGGATGATAAAAGCGTGAAGATATGGGAAATGGTGGTCCAATTTTCGAAATGGCGAGAAATTGGAGAAATGCTCAATTCGTTAGTTGAGAAATTGAGTGCAGAAATGGCGTCGATCGGCATGTCGTTGGCGGAAGATTTCATATTCCTTCACCCCGGTTCTGACCCGGTGGAGGTGATTCAGTGTGAGGTGGGTGGCGGCGGCGATGGCGGCTGTCGGTGGGCAATCGTGTCGAATACAATGGTGTTCACCAGCTCCAATGTCGGCGTCAGAGACTTGCAGAGGGCGTTGAGATCAAAAAGTCCACGAATCATGGTCAAGGTCAAGGATTTCGACAATGACTGA
Protein sequence
MFECFDLRNPFGDLVKFRHLIADPNVFSAIISFAGGGMVAVGLLGSPEDDKSVKIWEMVVQFSKWREIGEMLNSLVEKLSAEMASIGMSLAEDFIFLHPGSDPVEVIQCEVGGGGDGGCRWAIVSNTMVFTSSNVGVRDLQRALRSKSPRIMVKVKDFDND
Homology
BLAST of Lcy11g011720 vs. ExPASy TrEMBL
Match:
A0A6J1GXN4 (F-box/kelch-repeat protein At1g23390 OS=Cucurbita moschata OX=3662 GN=LOC111458448 PE=4 SV=1)
HSP 1 Score: 204.1 bits (518), Expect = 4.3e-49
Identity = 109/150 (72.67%), Postives = 120/150 (80.00%), Query Frame = 0
Query: 23 DPNVFSAIISFAGGGMVAVGLLGSPEDDKSVKIWEMVVQFSKWREIGEMLNSLVEKL--- 82
DP+VFS+II FAGGGMV VGLLGSPED KSVKI+E+VVQFS+WR+IGEM SLVEKL
Sbjct: 229 DPDVFSSIIGFAGGGMVIVGLLGSPEDVKSVKIYEVVVQFSEWRKIGEMPKSLVEKLQGE 288
Query: 83 SAEMASIGMSLAEDFIFLHPGSDPVEVIQCEVGGGGDGGCRWAIVSNT----------MV 142
SAEMASIGMS A DFIFLH GSDPVEVIQCEV GGDGGCRW IV NT +V
Sbjct: 289 SAEMASIGMSSAGDFIFLHHGSDPVEVIQCEVVSGGDGGCRWGIVPNTVVDDRTRLRRLV 348
Query: 143 FTSSNVGVRDLQRALRSKSPRIMVKVKDFD 160
FTSSNVGV DLQRALRS+SP+ + VK+ D
Sbjct: 349 FTSSNVGVEDLQRALRSESPQTTINVKESD 378
BLAST of Lcy11g011720 vs. ExPASy TrEMBL
Match:
A0A6J1K3T3 (F-box/kelch-repeat protein At1g23390 OS=Cucurbita maxima OX=3661 GN=LOC111490395 PE=4 SV=1)
HSP 1 Score: 181.8 bits (460), Expect = 2.3e-42
Identity = 100/150 (66.67%), Postives = 114/150 (76.00%), Query Frame = 0
Query: 23 DPNVFSAIISFAGGGMVAVGLLGSPEDDKSVKIWEMVVQFSKWREIGEMLNSLVEKL--- 82
+P+VFS+II FAG GMV VGL GSPED KSVKI+E+VVQFS++R+IGEM S +EKL
Sbjct: 229 NPDVFSSIIGFAGDGMVIVGLSGSPEDVKSVKIYEVVVQFSEYRKIGEMPKSFIEKLQGE 288
Query: 83 SAEMASIGMSLAEDFIFLHPGSDPVEVIQCEVGGGGDGGCRWAIVSNTM----------V 142
SAEMASIGMS A DFIFLH GSDPVEVIQCEV G D GCRW IV NT+ V
Sbjct: 289 SAEMASIGMSSAGDFIFLHHGSDPVEVIQCEVVRGSDYGCRWGIVPNTVVDDRTRLRRFV 348
Query: 143 FTSSNVGVRDLQRALRSKSPRIMVKVKDFD 160
FTSSNV V LQRALRS+SP+ +KVK+ D
Sbjct: 349 FTSSNVSVEHLQRALRSESPQTTIKVKESD 378
BLAST of Lcy11g011720 vs. ExPASy TrEMBL
Match:
A0A0A0KQ77 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G600900 PE=4 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 5.6e-41
Identity = 94/152 (61.84%), Postives = 114/152 (75.00%), Query Frame = 0
Query: 23 DPNVFSAIISFAGGGMVAVGLLGSPEDDKSVKIWEMVVQFSKWREIGEMLNSLVEKL--- 82
DP++FS+I+ FAGGGMV VGL+GSPED KSVKI+ + +FS+W EIGEM SLVEKL
Sbjct: 228 DPDLFSSILGFAGGGMVVVGLVGSPEDVKSVKIYGVTAEFSEWGEIGEMPKSLVEKLQGE 287
Query: 83 SAEMASIGMSLAEDFIFLHPGSDPVEVIQCEVGGGGDGGCRWAIVSNT----------MV 142
SAEMASIGMS A DF+F+H GSDPVE+IQCEV G GGC W IV NT +V
Sbjct: 288 SAEMASIGMSWAGDFLFIHHGSDPVEMIQCEVVG---GGCWWGIVPNTVVDDRIRLRGLV 347
Query: 143 FTSSNVGVRDLQRALRSKSPRIMVKVKDFDND 162
FTSSNVG+ +L++ALRS+ PRI +K+KD D
Sbjct: 348 FTSSNVGIEELKKALRSERPRISIKIKDRGRD 376
BLAST of Lcy11g011720 vs. ExPASy TrEMBL
Match:
A0A5D3CZK9 (F-box/kelch-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001160 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 1.2e-38
Identity = 93/153 (60.78%), Postives = 112/153 (73.20%), Query Frame = 0
Query: 23 DPNVFSAIISFAGGGMVAVGLLGSPEDDKSVKIWEM-VVQFSKWREIGEMLNSLVEKL-- 82
DPN+FS+II FAGG MV VGL GSPED +SVKI+ + +FS+WREIGEM SLVEKL
Sbjct: 228 DPNLFSSIIGFAGGEMVVVGLTGSPEDVQSVKIYGVTAAEFSEWREIGEMPKSLVEKLQG 287
Query: 83 -SAEMASIGMSLAEDFIFLHPGSDPVEVIQCEVGGGGDGGCRWAIVSNT----------M 142
SAEMASIGMS A DF+F+H GSDPVE+IQCEV G GGCRW V NT +
Sbjct: 288 ESAEMASIGMSWAGDFLFIHHGSDPVEMIQCEVVG---GGCRWGSVPNTVVDDRIRLRGL 347
Query: 143 VFTSSNVGVRDLQRALRSKSPRIMVKVKDFDND 162
V TSSN+G+ +L++ALRS+ PRI +K+KD D
Sbjct: 348 VLTSSNMGIEELKKALRSERPRITIKIKDCVGD 377
BLAST of Lcy11g011720 vs. ExPASy TrEMBL
Match:
E5GBI1 (F-box/kelch protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 1.2e-38
Identity = 93/153 (60.78%), Postives = 112/153 (73.20%), Query Frame = 0
Query: 23 DPNVFSAIISFAGGGMVAVGLLGSPEDDKSVKIWEM-VVQFSKWREIGEMLNSLVEKL-- 82
DPN+FS+II FAGG MV VGL GSPED +SVKI+ + +FS+WREIGEM SLVEKL
Sbjct: 228 DPNLFSSIIGFAGGEMVVVGLTGSPEDVQSVKIYGVTAAEFSEWREIGEMPKSLVEKLQG 287
Query: 83 -SAEMASIGMSLAEDFIFLHPGSDPVEVIQCEVGGGGDGGCRWAIVSNT----------M 142
SAEMASIGMS A DF+F+H GSDPVE+IQCEV G GGCRW V NT +
Sbjct: 288 ESAEMASIGMSWAGDFLFIHHGSDPVEMIQCEVVG---GGCRWGSVPNTVVDDRIRLRGL 347
Query: 143 VFTSSNVGVRDLQRALRSKSPRIMVKVKDFDND 162
V TSSN+G+ +L++ALRS+ PRI +K+KD D
Sbjct: 348 VLTSSNMGIEELKKALRSERPRITIKIKDCVGD 377
BLAST of Lcy11g011720 vs. NCBI nr
Match:
XP_022956902.1 (F-box/kelch-repeat protein At1g23390 [Cucurbita moschata])
HSP 1 Score: 204.1 bits (518), Expect = 8.8e-49
Identity = 109/150 (72.67%), Postives = 120/150 (80.00%), Query Frame = 0
Query: 23 DPNVFSAIISFAGGGMVAVGLLGSPEDDKSVKIWEMVVQFSKWREIGEMLNSLVEKL--- 82
DP+VFS+II FAGGGMV VGLLGSPED KSVKI+E+VVQFS+WR+IGEM SLVEKL
Sbjct: 229 DPDVFSSIIGFAGGGMVIVGLLGSPEDVKSVKIYEVVVQFSEWRKIGEMPKSLVEKLQGE 288
Query: 83 SAEMASIGMSLAEDFIFLHPGSDPVEVIQCEVGGGGDGGCRWAIVSNT----------MV 142
SAEMASIGMS A DFIFLH GSDPVEVIQCEV GGDGGCRW IV NT +V
Sbjct: 289 SAEMASIGMSSAGDFIFLHHGSDPVEVIQCEVVSGGDGGCRWGIVPNTVVDDRTRLRRLV 348
Query: 143 FTSSNVGVRDLQRALRSKSPRIMVKVKDFD 160
FTSSNVGV DLQRALRS+SP+ + VK+ D
Sbjct: 349 FTSSNVGVEDLQRALRSESPQTTINVKESD 378
BLAST of Lcy11g011720 vs. NCBI nr
Match:
KAG6601515.1 (F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032295.1 F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 199.5 bits (506), Expect = 2.2e-47
Identity = 108/150 (72.00%), Postives = 119/150 (79.33%), Query Frame = 0
Query: 23 DPNVFSAIISFAGGGMVAVGLLGSPEDDKSVKIWEMVVQFSKWREIGEMLNSLVEKL--- 82
DP+VFS+II FAGGGMV VGLLGSPED KSVKI+E+VVQFS+ R+IGEM S VEKL
Sbjct: 229 DPDVFSSIIGFAGGGMVIVGLLGSPEDVKSVKIYEVVVQFSECRKIGEMPKSFVEKLQGE 288
Query: 83 SAEMASIGMSLAEDFIFLHPGSDPVEVIQCEVGGGGDGGCRWAIVSNT----------MV 142
SAEMASIGMS A DFIFLH GSDPVEVIQCEV GGDGGCRW IV NT +V
Sbjct: 289 SAEMASIGMSSAGDFIFLHHGSDPVEVIQCEVVSGGDGGCRWGIVPNTVVDDRTRLRRLV 348
Query: 143 FTSSNVGVRDLQRALRSKSPRIMVKVKDFD 160
FTSSNVGV DLQRALRS+SP+ +KVK+ D
Sbjct: 349 FTSSNVGVEDLQRALRSESPQTTIKVKESD 378
BLAST of Lcy11g011720 vs. NCBI nr
Match:
XP_023552273.1 (F-box/kelch-repeat protein At1g23390 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 194.1 bits (492), Expect = 9.1e-46
Identity = 104/150 (69.33%), Postives = 118/150 (78.67%), Query Frame = 0
Query: 23 DPNVFSAIISFAGGGMVAVGLLGSPEDDKSVKIWEMVVQFSKWREIGEMLNSLVEKL--- 82
DP++F++II FAGGGMV VGLLGSPED KSVKI+++VVQF + R+IGEM S VEKL
Sbjct: 229 DPDIFTSIIGFAGGGMVIVGLLGSPEDVKSVKIYKVVVQFFQCRKIGEMPKSFVEKLQGE 288
Query: 83 SAEMASIGMSLAEDFIFLHPGSDPVEVIQCEVGGGGDGGCRWAIVSNT----------MV 142
SAEMASIGMS A DFIFLH GSDPVEVIQCEV GGDGGCRW IV NT +V
Sbjct: 289 SAEMASIGMSSAGDFIFLHHGSDPVEVIQCEVVSGGDGGCRWGIVPNTVVDDRTRLRRLV 348
Query: 143 FTSSNVGVRDLQRALRSKSPRIMVKVKDFD 160
FTSSNVGV DLQRALRS+SP+ +KVK+ D
Sbjct: 349 FTSSNVGVEDLQRALRSESPQTTIKVKESD 378
BLAST of Lcy11g011720 vs. NCBI nr
Match:
XP_022994769.1 (F-box/kelch-repeat protein At1g23390 [Cucurbita maxima])
HSP 1 Score: 181.8 bits (460), Expect = 4.7e-42
Identity = 100/150 (66.67%), Postives = 114/150 (76.00%), Query Frame = 0
Query: 23 DPNVFSAIISFAGGGMVAVGLLGSPEDDKSVKIWEMVVQFSKWREIGEMLNSLVEKL--- 82
+P+VFS+II FAG GMV VGL GSPED KSVKI+E+VVQFS++R+IGEM S +EKL
Sbjct: 229 NPDVFSSIIGFAGDGMVIVGLSGSPEDVKSVKIYEVVVQFSEYRKIGEMPKSFIEKLQGE 288
Query: 83 SAEMASIGMSLAEDFIFLHPGSDPVEVIQCEVGGGGDGGCRWAIVSNTM----------V 142
SAEMASIGMS A DFIFLH GSDPVEVIQCEV G D GCRW IV NT+ V
Sbjct: 289 SAEMASIGMSSAGDFIFLHHGSDPVEVIQCEVVRGSDYGCRWGIVPNTVVDDRTRLRRFV 348
Query: 143 FTSSNVGVRDLQRALRSKSPRIMVKVKDFD 160
FTSSNV V LQRALRS+SP+ +KVK+ D
Sbjct: 349 FTSSNVSVEHLQRALRSESPQTTIKVKESD 378
BLAST of Lcy11g011720 vs. NCBI nr
Match:
XP_004135258.1 (F-box/kelch-repeat protein At1g23390 [Cucumis sativus] >KGN51788.1 hypothetical protein Csa_009371 [Cucumis sativus])
HSP 1 Score: 177.2 bits (448), Expect = 1.2e-40
Identity = 94/152 (61.84%), Postives = 114/152 (75.00%), Query Frame = 0
Query: 23 DPNVFSAIISFAGGGMVAVGLLGSPEDDKSVKIWEMVVQFSKWREIGEMLNSLVEKL--- 82
DP++FS+I+ FAGGGMV VGL+GSPED KSVKI+ + +FS+W EIGEM SLVEKL
Sbjct: 228 DPDLFSSILGFAGGGMVVVGLVGSPEDVKSVKIYGVTAEFSEWGEIGEMPKSLVEKLQGE 287
Query: 83 SAEMASIGMSLAEDFIFLHPGSDPVEVIQCEVGGGGDGGCRWAIVSNT----------MV 142
SAEMASIGMS A DF+F+H GSDPVE+IQCEV G GGC W IV NT +V
Sbjct: 288 SAEMASIGMSWAGDFLFIHHGSDPVEMIQCEVVG---GGCWWGIVPNTVVDDRIRLRGLV 347
Query: 143 FTSSNVGVRDLQRALRSKSPRIMVKVKDFDND 162
FTSSNVG+ +L++ALRS+ PRI +K+KD D
Sbjct: 348 FTSSNVGIEELKKALRSERPRISIKIKDRGRD 376
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1GXN4 | 4.3e-49 | 72.67 | F-box/kelch-repeat protein At1g23390 OS=Cucurbita moschata OX=3662 GN=LOC1114584... | [more] |
| A0A6J1K3T3 | 2.3e-42 | 66.67 | F-box/kelch-repeat protein At1g23390 OS=Cucurbita maxima OX=3661 GN=LOC111490395... | [more] |
| A0A0A0KQ77 | 5.6e-41 | 61.84 | F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G600900 PE=4 ... | [more] |
| A0A5D3CZK9 | 1.2e-38 | 60.78 | F-box/kelch-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
| E5GBI1 | 1.2e-38 | 60.78 | F-box/kelch protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_022956902.1 | 8.8e-49 | 72.67 | F-box/kelch-repeat protein At1g23390 [Cucurbita moschata] | [more] |
| KAG6601515.1 | 2.2e-47 | 72.00 | F-box/kelch-repeat protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG... | [more] |
| XP_023552273.1 | 9.1e-46 | 69.33 | F-box/kelch-repeat protein At1g23390 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022994769.1 | 4.7e-42 | 66.67 | F-box/kelch-repeat protein At1g23390 [Cucurbita maxima] | [more] |
| XP_004135258.1 | 1.2e-40 | 61.84 | F-box/kelch-repeat protein At1g23390 [Cucumis sativus] >KGN51788.1 hypothetical ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
