Lcy11g011270 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g011270
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr11: 13375810 .. 13376070 (+)
RNA-Seq ExpressionLcy11g011270
SyntenyLcy11g011270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGATTGATGCTTCGTGGAATGAAGACTTGAAGATTGGAGGTGTTGGCTGGGTAGTTCGTGATTCCTCAGGATCTCTAGTAGAAACGGGCTGTAAACAAATCGGTCGTAGAAGGCAAATCAAATCCGAAGCTCTAGCGATTAAAGAAGGCCTGAAGGCCTATATTTTGAGTGATCGAGGAAGTAATGTACCTTTGATGGTCGAGACAGATGCTTTGGAGGTCATTAAATCGCTAAATTTTGAAAATGCAGACATCTAA

mRNA sequence

ATGACGATTGATGCTTCGTGGAATGAAGACTTGAAGATTGGAGGTGTTGGCTGGGTAGTTCGTGATTCCTCAGGATCTCTAGTAGAAACGGGCTGTAAACAAATCGGTCGTAGAAGGCAAATCAAATCCGAAGCTCTAGCGATTAAAGAAGGCCTGAAGGCCTATATTTTGAGTGATCGAGGAAGTAATGTACCTTTGATGGTCGAGACAGATGCTTTGGAGGTCATTAAATCGCTAAATTTTGAAAATGCAGACATCTAA

Coding sequence (CDS)

ATGACGATTGATGCTTCGTGGAATGAAGACTTGAAGATTGGAGGTGTTGGCTGGGTAGTTCGTGATTCCTCAGGATCTCTAGTAGAAACGGGCTGTAAACAAATCGGTCGTAGAAGGCAAATCAAATCCGAAGCTCTAGCGATTAAAGAAGGCCTGAAGGCCTATATTTTGAGTGATCGAGGAAGTAATGTACCTTTGATGGTCGAGACAGATGCTTTGGAGGTCATTAAATCGCTAAATTTTGAAAATGCAGACATCTAA

Protein sequence

MTIDASWNEDLKIGGVGWVVRDSSGSLVETGCKQIGRRRQIKSEALAIKEGLKAYILSDRGSNVPLMVETDALEVIKSLNFENADI
Homology
BLAST of Lcy11g011270 vs. ExPASy TrEMBL
Match: A0A6J5UV01 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32434 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-05
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 4    DASWNEDLKIGGVGWVVRDSSGSLVETGCK-QIGRRRQIKSEALAIKEGLKAYILSDRGS 63
            DA+W    ++GGVGWVVRDS G +V+ GCK  +     +  EA AI+E L A + S    
Sbjct: 1072 DAAWVSQTQMGGVGWVVRDSYGWMVQAGCKGDMRGGSALAMEAKAIREALLACVQSGLSK 1131

Query: 64   NVPLMVETDALEVIKSLNFE-NADI 87
               L VE+D+L++I+ L  E N DI
Sbjct: 1132 ---LEVESDSLQLIRMLGGEWNIDI 1153

BLAST of Lcy11g011270 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 28/87 (32.18%), Postives = 54/87 (62.07%), Query Frame = 0

Query: 1   MTIDASWNEDLKIGGVGWVVRDSSGSLVETGCKQIGRRRQIKS-EALAIKEGLKAYILSD 60
           +  DASW+E+ ++GG+GW++ D  G +V  G  +I  +++I + E + I  GL+   +  
Sbjct: 115 LNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQS 174

Query: 61  RGSNVPLMVETDALEVIKSLNFENADI 87
           R    P+ +E+D++EVI+ +  E+ D+
Sbjct: 175 RS---PIYLESDSVEVIRLMKKEDVDL 198

BLAST of Lcy11g011270 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-05
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 1   MTIDASWNEDLKIGGVGWVVRDSSGSLVETGCKQIGRRRQIK-SEALAIKEGLKAYILSD 60
           +  DA+W  D    G+GW++RD  G +++TGC+ I   R I   E +AI EGL+A     
Sbjct: 265 LNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAI---R 324

Query: 61  RGSNVPLMVETDALEVIKSLN 81
           +    P+ +E+D+LE I  L+
Sbjct: 325 QEHCRPIHLESDSLEAIHLLH 342

BLAST of Lcy11g011270 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-05
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 1   MTIDASWNEDLKIGGVGWVVRDSSGSLVETGCKQIGRRRQIK-SEALAIKEGLKAYILSD 60
           +  DA+W  D    G+GW++RD  G +++TGC+ I   R I   E +AI EGL+A     
Sbjct: 230 LNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAI---R 289

Query: 61  RGSNVPLMVETDALEVIKSLN 81
           +    P+ +E+D+LE I  L+
Sbjct: 290 QEHCRPIHLESDSLEAIHLLH 307

BLAST of Lcy11g011270 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 32/87 (36.78%), Postives = 49/87 (56.32%), Query Frame = 0

Query: 1   MTIDASWNEDLKIGGVGWVVRDSSGSLVETGCKQIGRRRQIK-SEALAIKEGLKAYILSD 60
           +  DASW++    GG+GW++R   G +V  G + +     +K  EA AI EGL+   L++
Sbjct: 81  LNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRN--LTN 140

Query: 61  RGSNVPLMVETDALEVIKSLNFENADI 87
            G   PL +ETD+ EV   LN +  D+
Sbjct: 141 LGVLRPLHIETDSAEVESLLNRKREDL 165

BLAST of Lcy11g011270 vs. NCBI nr
Match: CAB4279811.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-05
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 4    DASWNEDLKIGGVGWVVRDSSGSLVETGCK-QIGRRRQIKSEALAIKEGLKAYILSDRGS 63
            DA+W    ++GGVGWVVRDS G +V+ GCK  +     +  EA AI+E L A + S    
Sbjct: 1072 DAAWVSQTQMGGVGWVVRDSYGWMVQAGCKGDMRGGSALAMEAKAIREALLACVQSGLSK 1131

Query: 64   NVPLMVETDALEVIKSLNFE-NADI 87
               L VE+D+L++I+ L  E N DI
Sbjct: 1132 ---LEVESDSLQLIRMLGGEWNIDI 1153

BLAST of Lcy11g011270 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-05
Identity = 28/87 (32.18%), Postives = 54/87 (62.07%), Query Frame = 0

Query: 1   MTIDASWNEDLKIGGVGWVVRDSSGSLVETGCKQIGRRRQIKS-EALAIKEGLKAYILSD 60
           +  DASW+E+ ++GG+GW++ D  G +V  G  +I  +++I + E + I  GL+   +  
Sbjct: 115 LNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQS 174

Query: 61  RGSNVPLMVETDALEVIKSLNFENADI 87
           R    P+ +E+D++EVI+ +  E+ D+
Sbjct: 175 RS---PIYLESDSVEVIRLMKKEDVDL 198

BLAST of Lcy11g011270 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 9.3e-05
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 1   MTIDASWNEDLKIGGVGWVVRDSSGSLVETGCKQIGRRRQIK-SEALAIKEGLKAYILSD 60
           +  DA+W  D    G+GW++RD  G +++TGC+ I   R I   E +AI EGL+A     
Sbjct: 265 LNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAI---R 324

Query: 61  RGSNVPLMVETDALEVIKSLN 81
           +    P+ +E+D+LE I  L+
Sbjct: 325 QEHCRPIHLESDSLEAIHLLH 342

BLAST of Lcy11g011270 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 9.3e-05
Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 1   MTIDASWNEDLKIGGVGWVVRDSSGSLVETGCKQIGRRRQIK-SEALAIKEGLKAYILSD 60
           +  DA+W  D    G+GW++RD  G +++TGC+ I   R I   E +AI EGL+A     
Sbjct: 230 LNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAI---R 289

Query: 61  RGSNVPLMVETDALEVIKSLN 81
           +    P+ +E+D+LE I  L+
Sbjct: 290 QEHCRPIHLESDSLEAIHLLH 307

BLAST of Lcy11g011270 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 3.5e-04
Identity = 32/87 (36.78%), Postives = 49/87 (56.32%), Query Frame = 0

Query: 1   MTIDASWNEDLKIGGVGWVVRDSSGSLVETGCKQIGRRRQIK-SEALAIKEGLKAYILSD 60
           +  DASW++    GG+GW++R   G +V  G + +     +K  EA AI EGL+   L++
Sbjct: 81  LNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRN--LTN 140

Query: 61  RGSNVPLMVETDALEVIKSLNFENADI 87
            G   PL +ETD+ EV   LN +  D+
Sbjct: 141 LGVLRPLHIETDSAEVESLLNRKREDL 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J5UV011.5e-0543.53Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=... [more]
A0A6J1CQG02.0e-0532.18uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DL644.5e-0537.04uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DQC94.5e-0537.04uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DNV91.7e-0436.78uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
Match NameE-valueIdentityDescription
CAB4279811.13.2e-0543.53unnamed protein product [Prunus armeniaca][more]
XP_022143317.14.2e-0532.18uncharacterized protein LOC111013216 [Momordica charantia][more]
XP_022154990.19.3e-0537.04uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
XP_022154991.19.3e-0537.04uncharacterized protein LOC111022134 isoform X2 [Momordica charantia][more]
XP_022155262.13.5e-0436.78uncharacterized protein LOC111022403 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..85
e-value: 2.0E-6
score: 29.8
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 3..81
e-value: 3.1E-9
score: 36.7
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 3..80
e-value: 8.62716E-10
score: 49.2348
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g011270.1Lcy11g011270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity