Lcy11g010900 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g010900
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Girdin-like
Location	Chr11: 12666959 .. 12668426 (+)
RNA-Seq Expression	Lcy11g010900
Synteny	Lcy11g010900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTGGATTAGATGTGGACGTGGTAATTCTAATTCTCCATCTGTTGCTACTACTGGTCGGTTGATTTGCAAAATGGCATCTTCTTGTAGGGTTGTACGTAGGTGAAGGTCAATTGGACTTGACAGTGGAACTCTCCTCTTGTAGTCTGAACAACTGCGCTGGTAGATCCTCCCTATATATGTTAATTTTTTTTTCTTTTGTGCGTTTATTTTAATTTAATCACACTTAAAAAAAAGCTTTTATATGTAATAGTTTTACTTTTGTTTTAAATGCTCGGTTAACACTACAGTTTGGTTAATAACCATGTACATTTTTTTAAGGGAAAAACACACTTTTGGTCCTTGAGGTTTGGGTTAAAATACACTTTGGTCCCTAAGTTTTAAAACTCAACAAAATTACCCCTGAGGTTTGGATTTCGTTACACTTTTGGTCCCTCTGTCCAATTTTCTGTTAAACCCTAACAGATTGTTGACATGGCACCATTATTTTAATAAAAAAATCATTTTTAAAATTTTCTAAATAAAAATATATTAAAATAATATAAACATTATTATTTTATTATTTTTTTAATTCTTTCTCCCCCTTTCCTTTATTCTTCTTCTTCATCCTCTTCCTTTCAACTCAGTTAGCACTTGTAATAATGTTGGAGAATCATCTAATAGAGCAGTAGACAAACTTGACCAGCTAGCAACAAAGCGGAAAGAGTTAGTGGGAAGAAATCAAACATTGAAGCTAGAAAATGAAAAATTACAGCAAGAGGTCAAACGTTTCATGAACCAGGTAACTCAAGCTAATGGCAAACTCGAAGAAGTAAACTGTCAAAAAAACGAGCCAAGCGAGAATGAGAGTATGACGTGCAGGACGAGGAGAATATAAGGTTAACTAAAGAGAATCATGCTCTGAGGAATGAGAATACTGCACTACAAAGAGCAACTCGTTCACAAGAGGACAGGATCAAAGACGTTTCAAGAGGCAAAGAAACTCACTTAGAGTTAGTTGCAGAATTAAACGAGACCATCAACAAGCAGAAAACGCAACTTATTGAGTTTGAAGAAGCCAATACTGGCCTACGTCGAACGCTGGACAATCTACACGTGATTATGTAGGCTCAATCAGAAGAGTCTGAAGCTTTAAAAAGTTACGCAAGCTCGTTAGAACGTCAGCTCCAAGCATTTCAAAGAGCAAGCGAACAGTTGTCGCTAGAGAGAGGACAACTAGAAGAGAAATACTCTTCACTCAGGAGAGATTATGCCAATTTGAGAGATGACATGCAAATAGTTCTTGGGAAAGTAAACAGAACTATGAACACTATCAAGATCATGGTTAGGAGAGCCGGAGGATTTTCTGAATGGGCAAGGGATCTACGAGAGAGTACTTCACCTATGGCTTCTAATGCAGAGGAGTTGTTTGAGTTTTTAGGAATGATTCGTAGAGACCTTGGGTACTTTGGTCATTTTCATTAA

mRNA sequence

ATGTCGGTTGGATTAGATGTGGACGTGGCTCAATCAGAAGAGTCTGAAGCTTTAAAAAGTTACGCAAGCTCGTTAGAACGTCAGCTCCAAGCATTTCAAAGAGCAAGCGAACAGTTGTCGCTAGAGAGAGGACAACTAGAAGAGAAATACTCTTCACTCAGGAGAGATTATGCCAATTTGAGAGATGACATGCAAATAGTTCTTGGGAAAGTAAACAGAACTATGAACACTATCAAGATCATGGTTAGGAGAGCCGGAGGATTTTCTGAATGGGCAAGGGATCTACGAGAGAGTACTTCACCTATGGCTTCTAATGCAGAGGAGTTGTTTGAGTTTTTAGGAATGATTCGTAGAGACCTTGGGTACTTTGGTCATTTTCATTAA

Coding sequence (CDS)

ATGTCGGTTGGATTAGATGTGGACGTGGCTCAATCAGAAGAGTCTGAAGCTTTAAAAAGTTACGCAAGCTCGTTAGAACGTCAGCTCCAAGCATTTCAAAGAGCAAGCGAACAGTTGTCGCTAGAGAGAGGACAACTAGAAGAGAAATACTCTTCACTCAGGAGAGATTATGCCAATTTGAGAGATGACATGCAAATAGTTCTTGGGAAAGTAAACAGAACTATGAACACTATCAAGATCATGGTTAGGAGAGCCGGAGGATTTTCTGAATGGGCAAGGGATCTACGAGAGAGTACTTCACCTATGGCTTCTAATGCAGAGGAGTTGTTTGAGTTTTTAGGAATGATTCGTAGAGACCTTGGGTACTTTGGTCATTTTCATTAA

Protein sequence

MSVGLDVDVAQSEESEALKSYASSLERQLQAFQRASEQLSLERGQLEEKYSSLRRDYANLRDDMQIVLGKVNRTMNTIKIMVRRAGGFSEWARDLRESTSPMASNAEELFEFLGMIRRDLGYFGHFH

Homology

[Close]

BLAST of Lcy11g010900 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 8.4e-16
Identity = 53/127 (41.73%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 2   SVGLDVDVAQ-SEESEALKSYASSLERQLQAFQRASEQLSLERGQLEEKYSSLRRDYANL 61
           +VGL + +A+ SEE E LK+YA SL  QL A Q +S++++ E   L   Y  ++ DY   
Sbjct: 503 TVGLHLKMAERSEEYEILKNYADSLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDLH 562

Query: 62  RDDMQIVLGKVNRTMNTIKIMVRRAGGFSEWARDLRESTSPMASNAEELFEFLGMIRRDL 121
             D Q+++ +V++T+  ++++ +RA GF+EWA DLR +   M  +A++L  FL MI R+L
Sbjct: 563 TRDFQVLVERVDQTIEFLRMVSKRADGFAEWAVDLRVNFFSMQPHADDLNRFLKMICREL 622

Query: 122 GYFGHFH 128
           G+FGHFH
Sbjct: 623 GHFGHFH 629

[Close]

BLAST of Lcy11g010900 vs. ExPASy TrEMBL
Match: A0A5D3D533 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 48/117 (41.03%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 11  QSEESEALKSYASSLERQLQAFQRASEQLSLERGQLEEKYSSLRRDYANLRDDMQIVLGK 70
           +SEE E LK+Y  SL  QL A Q +S++++ E   L   Y  ++ DY     D Q+++ +
Sbjct: 257 RSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVER 316

Query: 71  VNRTMNTIKIMVRRAGGFSEWARDLRESTSPMASNAEELFEFLGMIRRDLGYFGHFH 128
           V++T+  +++M +RA GF+EWA DLR     M  +A++L +FL MI R+LG+FG FH
Sbjct: 317 VDQTIEFLRMMSKRANGFAEWAADLRVKFFSMHPHADDLNKFLKMICRELGHFGRFH 373

[Close]

BLAST of Lcy11g010900 vs. ExPASy TrEMBL
Match: A0A5A7V9X6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.1e-14
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 12  SEESEALKSYASSLERQLQAFQRASEQLSLERGQLEEKYSSLRRDYANLRDDMQIVLGKV 71
           SEE E LK+Y  SL  QL A Q +S +++ E   L   Y  ++ DY     D Q+++ +V
Sbjct: 233 SEEYEILKNYVESLHYQLTALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERV 292

Query: 72  NRTMNTIKIMVRRAGGFSEWARDLRESTSPMASNAEELFEFLGMIRRDLGYFGHFH 128
           ++T+  ++++ +RA GF+EWA DLR +   +  +A++L  FL MI R+LG+FGHFH
Sbjct: 293 DQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHADDLNRFLKMICRELGHFGHFH 348

[Close]

BLAST of Lcy11g010900 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 46/117 (39.32%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 11  QSEESEALKSYASSLERQLQAFQRASEQLSLERGQLEEKYSSLRRDYANLRDDMQIVLGK 70
           +SEE E LK+Y  SL  QL A Q +S++++ E   L   Y  ++ DY     D Q+++ +
Sbjct: 209 RSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVER 268

Query: 71  VNRTMNTIKIMVRRAGGFSEWARDLRESTSPMASNAEELFEFLGMIRRDLGYFGHFH 128
           V++T+  ++++ +RA GF+EWA DLR +   +  +A++L  FL MI R+LG+FG FH
Sbjct: 269 VDQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHADDLNRFLKMICRELGHFGRFH 325

[Close]

BLAST of Lcy11g010900 vs. ExPASy TrEMBL
Match: A0A5D3DK34 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 46/119 (38.66%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 9   VAQSEESEALKSYASSLERQLQAFQRASEQLSLERGQLEEKYSSLRRDYANLRDDMQIVL 68
           V +SEE E LK+Y  SL  QL AFQ +S++++ E   L+  Y  ++ DY     D Q+++
Sbjct: 338 VERSEEYEILKNYPDSLHYQLIAFQNSSKRITQEYESLKTDYVQMKVDYDLQTRDFQVLV 397

Query: 69  GKVNRTMNTIKIMVRRAGGFSEWARDLRESTSPMASNAEELFEFLGMIRRDLGYFGHFH 128
            ++++T+  ++++ +RA  F+EWA DLR +   + S+A++L  FL MI ++LG+FG FH
Sbjct: 398 ERIDQTIKFLRMVSKRANVFAEWAADLRVNFFSLQSHADDLNRFLKMICKELGHFGRFH 456

[Close]

BLAST of Lcy11g010900 vs. NCBI nr
Match: KAA0036941.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-15
Identity = 53/127 (41.73%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 2   SVGLDVDVAQ-SEESEALKSYASSLERQLQAFQRASEQLSLERGQLEEKYSSLRRDYANL 61
           +VGL + +A+ SEE E LK+YA SL  QL A Q +S++++ E   L   Y  ++ DY   
Sbjct: 503 TVGLHLKMAERSEEYEILKNYADSLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDLH 562

Query: 62  RDDMQIVLGKVNRTMNTIKIMVRRAGGFSEWARDLRESTSPMASNAEELFEFLGMIRRDL 121
             D Q+++ +V++T+  ++++ +RA GF+EWA DLR +   M  +A++L  FL MI R+L
Sbjct: 563 TRDFQVLVERVDQTIEFLRMVSKRADGFAEWAVDLRVNFFSMQPHADDLNRFLKMICREL 622

Query: 122 GYFGHFH 128
           G+FGHFH
Sbjct: 623 GHFGHFH 629

[Close]

BLAST of Lcy11g010900 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-14
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = 0


Query: 12  SEESEALKSYASSLERQLQAFQRASEQLSLERGQLEEKYSSLRRDYANLRDDMQIVLGKV 71
           SEE E LK+Y  SL  QL A Q +S +++ E   L   Y  ++ DY     D Q+++ +V
Sbjct: 233 SEEYEILKNYVESLHYQLTALQNSSRRITQEYESLNTDYVQMKVDYDLQTRDFQVLVERV 292

Query: 72  NRTMNTIKIMVRRAGGFSEWARDLRESTSPMASNAEELFEFLGMIRRDLGYFGHFH 128
           ++T+  ++++ +RA GF+EWA DLR +   +  +A++L  FL MI R+LG+FGHFH
Sbjct: 293 DQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHADDLNRFLKMICRELGHFGHFH 348

[Close]

BLAST of Lcy11g010900 vs. NCBI nr
Match: TYK18656.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-14
Identity = 48/117 (41.03%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 11  QSEESEALKSYASSLERQLQAFQRASEQLSLERGQLEEKYSSLRRDYANLRDDMQIVLGK 70
           +SEE E LK+Y  SL  QL A Q +S++++ E   L   Y  ++ DY     D Q+++ +
Sbjct: 257 RSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDLQTRDFQVLVER 316

Query: 71  VNRTMNTIKIMVRRAGGFSEWARDLRESTSPMASNAEELFEFLGMIRRDLGYFGHFH 128
           V++T+  +++M +RA GF+EWA DLR     M  +A++L +FL MI R+LG+FG FH
Sbjct: 317 VDQTIEFLRMMSKRANGFAEWAADLRVKFFSMHPHADDLNKFLKMICRELGHFGRFH 373

[Close]

BLAST of Lcy11g010900 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-13
Identity = 48/116 (41.38%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 9   VAQSEESEALKSYASSLERQLQAFQRASEQLSLERGQLEEKYSSLRRDYANLRDDMQIVL 68
           V  SE+ + LK+YA SL  QL AFQ +SE++  E   L+  Y  ++ DY   R D Q ++
Sbjct: 265 VEHSEDYKILKNYADSLHHQLTAFQNSSERIVQEYKLLKTDYMQMKVDYDLQRRDFQTLV 324

Query: 69  GKVNRTMNTIKIMVRRAGGFSEWARDLRESTSPMASNAEELFEFLGMIRRDLGYFG 125
            +V++T+  ++I+ RRA GF+EWA DLR +   +  ++++L  FL MI R+LG+FG
Sbjct: 325 ERVDQTIGFLRIVSRRANGFAEWAADLRINFFSIRPHSDDLNRFLKMICRELGHFG 380

[Close]

BLAST of Lcy11g010900 vs. NCBI nr
Match: KAA0036956.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-13
Identity = 46/117 (39.32%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 11  QSEESEALKSYASSLERQLQAFQRASEQLSLERGQLEEKYSSLRRDYANLRDDMQIVLGK 70
           +SEE E LK+YA  L  QL A Q +S++++ E   L   Y  ++ DY     D Q+++ +
Sbjct: 24  RSEEYEILKNYADFLHYQLTALQNSSKRITQEYESLNTDYVQMKVDYDLHTRDFQVLVER 83

Query: 71  VNRTMNTIKIMVRRAGGFSEWARDLRESTSPMASNAEELFEFLGMIRRDLGYFGHFH 128
           V++T+  ++++ +RA GF+EW  +LR +   M  +A++L  FL MI R+LG+FGHFH
Sbjct: 84  VDQTIEFLRMVSKRANGFAEWVANLRVNFFSMQPHADDLNRFLKMICRELGHFGHFH 140

The following BLAST results are available for this feature:

BLAST of Lcy11g010900 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g010900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5S7	8.4e-16	41.73	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=...	[more]
A0A5D3D533	2.1e-14	41.03	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00200 PE...	[more]
A0A5A7V9X6	2.1e-14	40.52	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 P...	[more]
A0A5D3DJ95	1.3e-13	39.32	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P...	[more]
A0A5D3DK34	1.3e-13	38.66	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE...	[more]

BLAST of Lcy11g010900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036941.1	1.7e-15	41.73	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0062685.1	4.3e-14	40.52	girdin-like [Cucumis melo var. makuwa]	[more]
TYK18656.1	4.3e-14	41.03	girdin-like [Cucumis melo var. makuwa]	[more]
XP_031738551.1	2.8e-13	41.38	LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]	[more]
KAA0036956.1	2.8e-13	39.32	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of Lcy11g010900 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g010900.1	Lcy11g010900.1	mRNA