Lcy11g010880 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g010880
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Location	Chr11: 12640880 .. 12641101 (+)
RNA-Seq Expression	Lcy11g010880
Synteny	Lcy11g010880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAGTTCGTTTAGAGCTCCGAGAAACACGTGGAGGAAGAACGAGGTTGCGAAGCTTGTGGAGTCCCTCGTGTTCTTAGTTCATGTGGGCAGTTGGAGGTCTGGTAATGGGACGTTCAGACCTGGATATCAAGCGCAACTGGAGCATTTGATGAGGGAGAAACTGCCTGGACGGGACGTCCAACACAAAGCTACATTGAATCCAGGGTTCGCACCCTGA

mRNA sequence

ATGACCAGTTCGTTTAGAGCTCCGAGAAACACGTGGAGGAAGAACGAGGTTGCGAAGCTTGTGGAGTCCCTCGTGTTCTTAGTTCATGTGGGCAGTTGGAGGTCTGGTAATGGGACGTTCAGACCTGGATATCAAGCGCAACTGGAGCATTTGATGAGGGAGAAACTGCCTGGACGGGACGTCCAACACAAAGCTACATTGAATCCAGGGTTCGCACCCTGA

Coding sequence (CDS)

ATGACCAGTTCGTTTAGAGCTCCGAGAAACACGTGGAGGAAGAACGAGGTTGCGAAGCTTGTGGAGTCCCTCGTGTTCTTAGTTCATGTGGGCAGTTGGAGGTCTGGTAATGGGACGTTCAGACCTGGATATCAAGCGCAACTGGAGCATTTGATGAGGGAGAAACTGCCTGGACGGGACGTCCAACACAAAGCTACATTGAATCCAGGGTTCGCACCCTGA

Protein sequence

MTSSFRAPRNTWRKNEVAKLVESLVFLVHVGSWRSGNGTFRPGYQAQLEHLMREKLPGRDVQHKATLNPGFAP

Homology

[Close]

BLAST of Lcy11g010880 vs. ExPASy TrEMBL
Match: A0A5D3CQS4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00390 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.3e-15
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MTSSFRAPRNTWRKNEVAKLVESLVFLVHVGSWRSGNGTFRPGYQAQLEHLMREKLPGRD 60
          M SS RAP++TW K E AKLVE LV LV  G WRS NGTFRPGY AQL+ +M EKLP  +
Sbjct: 1  MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61 VQHKATLN 69
          +Q   T++
Sbjct: 61 IQGSPTID 68

[Close]

BLAST of Lcy11g010880 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1  MTSSFRAPRNTWRKNEVAKLVESLVFLVHVGSWRSGNGTFRPGYQAQLEHLMREKLPGRD 60
          M S  RAP++TW K E  K VE LV LV  G WRS NGTF+PGY AQL+ +M EKLPG +
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 VQHKATLN 69
          +Q  +T++
Sbjct: 61 IQESSTID 68

[Close]

BLAST of Lcy11g010880 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1  MTSSFRAPRNTWRKNEVAKLVESLVFLVHVGSWRSGNGTFRPGYQAQLEHLMREKLPGRD 60
          M S  RAP++TW K E  K VE LV LV  G WRS NGTF+PGY AQL+ +M EKLPG +
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 VQHKATLN 69
          +Q  +T++
Sbjct: 61 IQESSTID 68

[Close]

BLAST of Lcy11g010880 vs. ExPASy TrEMBL
Match: A0A5A7U6Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00120 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.5e-12
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1  MTSSFRAPRNTWRKNEVAKLVESLVFLVHVGSWRSGNGTFRPGYQAQLEHLMREKLPGRD 60
          MTSS R P++TW K E A LVE LV LV+ G WRS NGTFRPGY  QL  +M  K+PG +
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSNNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61 VQHKATLN 69
          + H +T++
Sbjct: 61 I-HASTID 67

[Close]

BLAST of Lcy11g010880 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-12
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1  MTSSFRAPRNTWRKNEVAKLVESLVFLVHVGSWRSGNGTFRPGYQAQLEHLMREKLPGRD 60
          MTSS R P++TW K E A LVE LV LV+ G WRS NGTFRPGY  QL  +M  K+PG +
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61 VQHKATLN 69
          + H +T++
Sbjct: 61 I-HASTID 67

[Close]

BLAST of Lcy11g010880 vs. NCBI nr
Match: KAA0066605.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MTSSFRAPRNTWRKNEVAKLVESLVFLVHVGSWRSGNGTFRPGYQAQLEHLMREKLPGRD 60
          M SS RAP++TW K E AKLVE LV LV  G WRS NGTFRPGY AQL+ +M EKLP  +
Sbjct: 1  MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61 VQHKATLN 69
          +Q   T++
Sbjct: 61 IQGSPTID 68

[Close]

BLAST of Lcy11g010880 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1  MTSSFRAPRNTWRKNEVAKLVESLVFLVHVGSWRSGNGTFRPGYQAQLEHLMREKLPGRD 60
          M S  RAP++TW K E  K VE LV LV  G WRS NGTF+PGY AQL+ +M EKLPG +
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 VQHKATLN 69
          +Q  +T++
Sbjct: 61 IQESSTID 68

[Close]

BLAST of Lcy11g010880 vs. NCBI nr
Match: KAA0051058.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 5.1e-12
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1  MTSSFRAPRNTWRKNEVAKLVESLVFLVHVGSWRSGNGTFRPGYQAQLEHLMREKLPGRD 60
          MTSS R P++TW K E A LVE LV LV+ G WRS NGTFRPGY  QL  +M  K+PG +
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSNNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61 VQHKATLN 69
          + H +T++
Sbjct: 61 I-HASTID 67

[Close]

BLAST of Lcy11g010880 vs. NCBI nr
Match: KAA0048377.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 6.7e-12
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1  MTSSFRAPRNTWRKNEVAKLVESLVFLVHVGSWRSGNGTFRPGYQAQLEHLMREKLPGRD 60
          MTSS R P++TW K E A LVE LV LV+ G WRS NGTFRPGY  QL  +M  K+PG +
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61 VQHKATLN 69
          + H +T++
Sbjct: 61 I-HASTID 67

[Close]

BLAST of Lcy11g010880 vs. NCBI nr
Match: KAA0063337.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 6.7e-12
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1  MTSSFRAPRNTWRKNEVAKLVESLVFLVHVGSWRSGNGTFRPGYQAQLEHLMREKLPGRD 60
          MTSS R P++TW K E A LVE LV LV+ G WRS NGTFRPGY  QL  +M  K+PG +
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61 VQHKATLN 69
          + H +T++
Sbjct: 61 I-HASTID 67

The following BLAST results are available for this feature:

BLAST of Lcy11g010880 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g010880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQS4	5.3e-15	60.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0H7	1.0e-13	55.88	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	1.0e-13	55.88	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7U6Z3	2.5e-12	55.88	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UME4	3.2e-12	55.88	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy11g010880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066605.1	1.1e-14	60.29	retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon p...	[more]
XP_008441954.1	2.1e-13	55.88	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0051058.1	5.1e-12	55.88	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048377.1	6.7e-12	55.88	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063337.1	6.7e-12	55.88	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy11g010880 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g010880.1	Lcy11g010880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043167	ion binding