Lcy11g010870 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g010870
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Location	Chr11: 12639321 .. 12640674 (+)
RNA-Seq Expression	Lcy11g010870
Synteny	Lcy11g010870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCCGATGAACTAGATCCCCATGAACTAGTGGCCATACAGACAAACTTCACCACAGCTCAAACTCAGATTCTCCTACTATTAGATCTATATATGAACGATCATAGGAGAATAGAACACCAATCACCCTACATTCGACACCACATTAGGCAACTAGCATTCTTCAGACTTATACACGAGTCTGACTTACGTTGTCGAGAGATTACAAGAATGGACAGAAGATGTTTTGCCATACTTTGCACCTTATTAAAAACAGTTGCCGGCTTATCCGGTACAGAGGTCGTAGATGTAGAAGAGATGGTTGCCATGTTCTTACACATCCTAGCCCACGACGTTAAGAACCGAGTAGTTCGTACGCAATTCGCTAGGTCTGGGGAGACAGTTTCTAGGCATTTCAACACCGTCTTTCATGGGGTGTTACGACTGCATGAAGTTCTCCTGAAAAAACCTGAGCCAGTCACGACCTCTTGTAAGGACCCGAGGTGGAAATGGTTTCAGGTATAGATCATTATTCATCCAACTTTAGCTAACTTTGGCGTCACTTCTAGTGTTAGAAACGTGAACCAATATTGCCTATACTATGTCGACGCAGAATTGCCTCGGTGCGTTAGATGGAACATACATCAAGGTCAATGTTAGTGTCCTCGATCGTCCGAGGTATAGAACAAGGAAAATGTGAAATTGCAACGAACCTGCTTGCTGTTTGTGATACAAAAGGAGATTTCACATTCGTCCTACTAGGGTGGGAAGGGTCTGCCGCTGATTCTCGGGTTCTTAAAGATGCAATATCATGACTGAACGGACTCAAAGTTCCGAAGGGTAAATAACCAGACATTTTTTCCTTTCACCATCCAACCCTTAGGAAGATGTACTGATCCAATATAACATTCCACAGGATATTATTATCTGTGCGATTCTGGGTACCCTAATGTAGAGGGTTCCCTGGCACTGTAATAGAGGGGAACATTACCACCTCTCTGAATGGCGTGGTGCGGGGAATGCACCAACTACTCCAAAAGAATTCTTCAACATGAAGCATTCATCTGCAAGGAATGTGATTGAGAGGGCGTTCGGTTTGTTAAAAGGAAGGTGGGCTATCGTCCGAGGGAAATCGTACTATCCAGTTCGAATTCAAGGATGGACCATCGCAGCGTATTACTTACTTCACAATCTTATCAATAGGGAGATGGGTGACCGTGAAATTCCCGATGAACTAGATGAGGTGGATTCTACGTCGCCTACAACTGATGGTGAGAATATTAATTCCATTGAGACTTCCGACGAATGGAGCTGGTGGAGGGATGAGTTGGCAGAACAGATATTTTCGGATTGGGAGTTACGTAATAGCTAA

mRNA sequence

ATGGATCCCGATGAACTAGATCCCCATGAACTAGTGGCCATACAGACAAACTTCACCACAGCTCAAACTCAGATTCTCCTACTATTAGATCTATATATGAACGATCATAGGAGAATAGAACACCAATCACCCTACATTCGACACCACATTAGGCAACTAGCATTCTTCAGACTTATACACGAGTCTGACTTACGTTGTCGAGAGATTACAAGAATGGACAGAAGATGTTTTGCCATACTTTGCACCTTATTAAAAACAGTTGCCGGCTTATCCGGTACAGAGGTCGTAGATGTAGAAGAGATGGTTGCCATGTTCTTACACATCCTAGCCCACGACGTTAAGAACCGAGTAGTTCGTACGCAATTCGCTAGGTCTGGGGAGACAGTTTCTAGGCATTTCAACACCGTCTTTCATGGGGTGTTACGACTGCATGAAGTTCTCCTGAAAAAACCTGAGCCAGTCACGACCTCTTGTAAGGACCCGAGGTGGAAATGGTTTCAGAGGGTTCCCTGGCACTGTAATAGAGGGGAACATTACCACCTCTCTGAATGGCGTGGTGCGGGGAATGCACCAACTACTCCAAAAGAATTCTTCAACATGAAGCATTCATCTGCAAGGAATGTGATTGAGAGGGCGTTCGGTTTGTTAAAAGGAAGGTGGGCTATCGTCCGAGGGAAATCGTACTATCCAGTTCGAATTCAAGGATGGACCATCGCAGCGTATTACTTACTTCACAATCTTATCAATAGGGAGATGGGTGACCGTGAAATTCCCGATGAACTAGATGAGGTGGATTCTACGTCGCCTACAACTGATGGTGAGAATATTAATTCCATTGAGACTTCCGACGAATGGAGCTGGTGGAGGGATGAGTTGGCAGAACAGATATTTTCGGATTGGGAGTTACGTAATAGCTAA

Coding sequence (CDS)

ATGGATCCCGATGAACTAGATCCCCATGAACTAGTGGCCATACAGACAAACTTCACCACAGCTCAAACTCAGATTCTCCTACTATTAGATCTATATATGAACGATCATAGGAGAATAGAACACCAATCACCCTACATTCGACACCACATTAGGCAACTAGCATTCTTCAGACTTATACACGAGTCTGACTTACGTTGTCGAGAGATTACAAGAATGGACAGAAGATGTTTTGCCATACTTTGCACCTTATTAAAAACAGTTGCCGGCTTATCCGGTACAGAGGTCGTAGATGTAGAAGAGATGGTTGCCATGTTCTTACACATCCTAGCCCACGACGTTAAGAACCGAGTAGTTCGTACGCAATTCGCTAGGTCTGGGGAGACAGTTTCTAGGCATTTCAACACCGTCTTTCATGGGGTGTTACGACTGCATGAAGTTCTCCTGAAAAAACCTGAGCCAGTCACGACCTCTTGTAAGGACCCGAGGTGGAAATGGTTTCAGAGGGTTCCCTGGCACTGTAATAGAGGGGAACATTACCACCTCTCTGAATGGCGTGGTGCGGGGAATGCACCAACTACTCCAAAAGAATTCTTCAACATGAAGCATTCATCTGCAAGGAATGTGATTGAGAGGGCGTTCGGTTTGTTAAAAGGAAGGTGGGCTATCGTCCGAGGGAAATCGTACTATCCAGTTCGAATTCAAGGATGGACCATCGCAGCGTATTACTTACTTCACAATCTTATCAATAGGGAGATGGGTGACCGTGAAATTCCCGATGAACTAGATGAGGTGGATTCTACGTCGCCTACAACTGATGGTGAGAATATTAATTCCATTGAGACTTCCGACGAATGGAGCTGGTGGAGGGATGAGTTGGCAGAACAGATATTTTCGGATTGGGAGTTACGTAATAGCTAA

Protein sequence

MDPDELDPHELVAIQTNFTTAQTQILLLLDLYMNDHRRIEHQSPYIRHHIRQLAFFRLIHESDLRCREITRMDRRCFAILCTLLKTVAGLSGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARSGETVSRHFNTVFHGVLRLHEVLLKKPEPVTTSCKDPRWKWFQRVPWHCNRGEHYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAIVRGKSYYPVRIQGWTIAAYYLLHNLINREMGDREIPDELDEVDSTSPTTDGENINSIETSDEWSWWRDELAEQIFSDWELRNS

Homology

[Close]

BLAST of Lcy11g010870 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.5e-98
Identity = 201/387 (51.94%), Postives = 239/387 (61.76%), Query Frame = 0


Query: 6   LDPHELVAIQTNFTTAQTQILLLLDLYMNDHRRIEHQSPYIRHHIRQLAFFRLIHESDLR 65
           +D HEL +I   F  +Q Q+LL+L+L  ND +RI H     RH IRQLA+FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CREITRMDRRCFAILCTLLKTVAGLSGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+ TRMDRRCFAILC LL+T+AGL+ TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVFHGVLRLHEVLLKKPEPVTTSCKDPRWKWFQ-------------RVP-- 185
           GET+SRHFN V   V+RLHE LLKKP+PV   C D RW+WF+              VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 186 --------------------------------WHCN------------------------ 245
                                           W  +                        
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 246 -----------------RGEHYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLK 305
                            RG+ YHL EWRG  NAP+T KEFFNMKHSSARNVIERAFG+LK
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

[Close]

BLAST of Lcy11g010870 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.5e-98
Identity = 202/387 (52.20%), Postives = 238/387 (61.50%), Query Frame = 0


Query: 6   LDPHELVAIQTNFTTAQTQILLLLDLYMNDHRRIEHQSPYIRHHIRQLAFFRLIHESDLR 65
           +D HEL +I   F  +Q Q+LL+L+L  ND +RI H     RH IRQLA+FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CREITRMDRRCFAILCTLLKTVAGLSGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+ TRMDRRCFAILC LL+T+AGL+ TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVFHGVLRLHEVLLKKPEPVTTSCKDPRWKWFQ-------------RVP-- 185
           GET+SRHFN V   V+RLHE LLKKP+PV   C D RWKWF+              VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTYIKVNVPAS 180

Query: 186 --------------------------------WH-------------------------- 245
                                           W                           
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNRLKVPKGYY 240

Query: 246 ---------------CNRGEHYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLK 305
                            RG+ YHL EWRG  NAP+T KEFFNMKHSSARNVIERAFG+LK
Sbjct: 241 YLVDAGYQNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

[Close]

BLAST of Lcy11g010870 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 3.2e-98
Identity = 200/387 (51.68%), Postives = 239/387 (61.76%), Query Frame = 0


Query: 6   LDPHELVAIQTNFTTAQTQILLLLDLYMNDHRRIEHQSPYIRHHIRQLAFFRLIHESDLR 65
           +D HEL +I   F  +Q Q+LL+L+L  ND +RI H     RH IRQLA+FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CREITRMDRRCFAILCTLLKTVAGLSGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+ TRMDRRCFAILC LL+T+AGL+ TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVFHGVLRLHEVLLKKPEPVTTSCKDPRWKWFQ-------------RVP-- 185
           GET+SRHFN V   V+RLH+ LLKKP+PV   C D RW+WF+              VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 186 --------------------------------WHCN------------------------ 245
                                           W  +                        
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 246 -----------------RGEHYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLK 305
                            RG+ YHL EWRG  NAP+T KEFFNMKHSSARNVIERAFG+LK
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

[Close]

BLAST of Lcy11g010870 vs. ExPASy TrEMBL
Match: A0A5A7VHB0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00240 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 1.2e-97
Identity = 198/387 (51.16%), Postives = 240/387 (62.02%), Query Frame = 0


Query: 6   LDPHELVAIQTNFTTAQTQILLLLDLYMNDHRRIEHQSPYIRHHIRQLAFFRLIHESDLR 65
           +D HEL +I   F  +Q Q+LL+L+L  ND +RI H     RH IRQLA+FR+IHESDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDLV 60

Query: 66  CREITRMDRRCFAILCTLLKTVAGLSGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+ TRMDRRCFAILC LL+T+AGL+ TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVFHGVLRLHEVLLKKPEPVTTSCKDPRWKWFQ-------------RVP-- 185
           GET+ RHFN +F  V+RLH+ LLKKP+PV   C D RW+WF+              VP  
Sbjct: 121 GETIFRHFNMIFLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 186 --------------------------------WHCN------------------------ 245
                                           W  +                        
Sbjct: 181 DQARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 246 -----------------RGEHYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLK 305
                            RG+ YHL EWR   NAP+T KEFFNMKHSSARNVIERAFG+LK
Sbjct: 241 YLVDVGYPNVEGFLAPYRGQRYHLQEWRDPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

[Close]

BLAST of Lcy11g010870 vs. ExPASy TrEMBL
Match: A0A5A7VG29 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3818G00010 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 2.7e-97
Identity = 200/387 (51.68%), Postives = 239/387 (61.76%), Query Frame = 0


Query: 6   LDPHELVAIQTNFTTAQTQILLLLDLYMNDHRRIEHQSPYIRHHIRQLAFFRLIHESDLR 65
           +D HEL +I   F  +Q Q+LL+L+L  ND +RI H     RH IRQLA+FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CREITRMDRRCFAILCTLLKTVAGLSGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+ TRMDRRCFAILC LL+T+AGL+ TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVFHGVLRLHEVLLKKPEPVTTSCKDPRWKWFQ-------------RVP-- 185
           GET+SRHFN V   V+RLHE LLKKP+PV   C D RW+ F+              VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRCFENCLGALDGTYIKVNVPAS 180

Query: 186 --------------------------------WHCN------------------------ 245
                                           W  +                        
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRLNRLKVPKGYY 240

Query: 246 -----------------RGEHYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLK 305
                            RG+HYHL EWRG  NAP+T KEFFNMKHSSA NVIERAFG+LK
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQHYHLQEWRGPENAPSTSKEFFNMKHSSACNVIERAFGVLK 300

[Close]

BLAST of Lcy11g010870 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 3.0e-98
Identity = 202/387 (52.20%), Postives = 238/387 (61.50%), Query Frame = 0


Query: 6   LDPHELVAIQTNFTTAQTQILLLLDLYMNDHRRIEHQSPYIRHHIRQLAFFRLIHESDLR 65
           +D HEL +I   F  +Q Q+LL+L+L  ND +RI H     RH IRQLA+FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CREITRMDRRCFAILCTLLKTVAGLSGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+ TRMDRRCFAILC LL+T+AGL+ TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVFHGVLRLHEVLLKKPEPVTTSCKDPRWKWFQ-------------RVP-- 185
           GET+SRHFN V   V+RLHE LLKKP+PV   C D RWKWF+              VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTYIKVNVPAS 180

Query: 186 --------------------------------WH-------------------------- 245
                                           W                           
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNRLKVPKGYY 240

Query: 246 ---------------CNRGEHYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLK 305
                            RG+ YHL EWRG  NAP+T KEFFNMKHSSARNVIERAFG+LK
Sbjct: 241 YLVDAGYQNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

[Close]

BLAST of Lcy11g010870 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 3.0e-98
Identity = 201/387 (51.94%), Postives = 239/387 (61.76%), Query Frame = 0


Query: 6   LDPHELVAIQTNFTTAQTQILLLLDLYMNDHRRIEHQSPYIRHHIRQLAFFRLIHESDLR 65
           +D HEL +I   F  +Q Q+LL+L+L  ND +RI H     RH IRQLA+FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CREITRMDRRCFAILCTLLKTVAGLSGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+ TRMDRRCFAILC LL+T+AGL+ TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVFHGVLRLHEVLLKKPEPVTTSCKDPRWKWFQ-------------RVP-- 185
           GET+SRHFN V   V+RLHE LLKKP+PV   C D RW+WF+              VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 186 --------------------------------WHCN------------------------ 245
                                           W  +                        
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 246 -----------------RGEHYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLK 305
                            RG+ YHL EWRG  NAP+T KEFFNMKHSSARNVIERAFG+LK
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

[Close]

BLAST of Lcy11g010870 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 368.2 bits (944), Expect = 6.7e-98
Identity = 200/387 (51.68%), Postives = 239/387 (61.76%), Query Frame = 0


Query: 6   LDPHELVAIQTNFTTAQTQILLLLDLYMNDHRRIEHQSPYIRHHIRQLAFFRLIHESDLR 65
           +D HEL +I   F  +Q Q+LL+L+L  ND +RI H     RH IRQLA+FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CREITRMDRRCFAILCTLLKTVAGLSGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+ TRMDRRCFAILC LL+T+AGL+ TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVFHGVLRLHEVLLKKPEPVTTSCKDPRWKWFQ-------------RVP-- 185
           GET+SRHFN V   V+RLH+ LLKKP+PV   C D RW+WF+              VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 186 --------------------------------WHCN------------------------ 245
                                           W  +                        
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 246 -----------------RGEHYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLK 305
                            RG+ YHL EWRG  NAP+T KEFFNMKHSSARNVIERAFG+LK
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

[Close]

BLAST of Lcy11g010870 vs. NCBI nr
Match: KAA0065736.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 366.3 bits (939), Expect = 2.5e-97
Identity = 198/387 (51.16%), Postives = 240/387 (62.02%), Query Frame = 0


Query: 6   LDPHELVAIQTNFTTAQTQILLLLDLYMNDHRRIEHQSPYIRHHIRQLAFFRLIHESDLR 65
           +D HEL +I   F  +Q Q+LL+L+L  ND +RI H     RH IRQLA+FR+IHESDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHESDLV 60

Query: 66  CREITRMDRRCFAILCTLLKTVAGLSGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+ TRMDRRCFAILC LL+T+AGL+ TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVFHGVLRLHEVLLKKPEPVTTSCKDPRWKWFQ-------------RVP-- 185
           GET+ RHFN +F  V+RLH+ LLKKP+PV   C D RW+WF+              VP  
Sbjct: 121 GETIFRHFNMIFLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPAS 180

Query: 186 --------------------------------WHCN------------------------ 245
                                           W  +                        
Sbjct: 181 DQARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYY 240

Query: 246 -----------------RGEHYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLK 305
                            RG+ YHL EWR   NAP+T KEFFNMKHSSARNVIERAFG+LK
Sbjct: 241 YLVDVGYPNVEGFLAPYRGQRYHLQEWRDPENAPSTSKEFFNMKHSSARNVIERAFGVLK 300

[Close]

BLAST of Lcy11g010870 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 365.2 bits (936), Expect = 5.7e-97
Identity = 200/387 (51.68%), Postives = 239/387 (61.76%), Query Frame = 0


Query: 6   LDPHELVAIQTNFTTAQTQILLLLDLYMNDHRRIEHQSPYIRHHIRQLAFFRLIHESDLR 65
           +D HEL +I   F  +Q Q+LL+L+L  ND +RI H     RH IRQLA+FR+IH SDL 
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 66  CREITRMDRRCFAILCTLLKTVAGLSGTEVVDVEEMVAMFLHILAHDVKNRVVRTQFARS 125
           CR+ TRMDRRCFAILC LL+T+AGL+ TEVVDVEEMVAMFLHILAHDVKNRV++ +F RS
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 126 GETVSRHFNTVFHGVLRLHEVLLKKPEPVTTSCKDPRWKWFQ-------------RVP-- 185
           GET+SRHFN V   V+RLHE LLKKP+PV   C D RW+ F+              VP  
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRCFENCLGALDGTYIKVNVPAS 180

Query: 186 --------------------------------WHCN------------------------ 245
                                           W  +                        
Sbjct: 181 DRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRLNRLKVPKGYY 240

Query: 246 -----------------RGEHYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLK 305
                            RG+HYHL EWRG  NAP+T KEFFNMKHSSA NVIERAFG+LK
Sbjct: 241 YLVDAGYPNAEGFLAPYRGQHYHLQEWRGPENAPSTSKEFFNMKHSSACNVIERAFGVLK 300

[Close]

BLAST of Lcy11g010870 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 4.9e-14
Identity = 45/138 (32.61%), Postives = 68/138 (49.28%), Query Frame = 0


Query: 175 RGEHYHLSEWRGAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAIVRGKSYYPVRIQ 234
           RG  YHL E+ G    P TP E FN++H S RNVIER FG+ K R+AI +    +  + Q
Sbjct: 67  RGVRYHLQEFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQ 126

Query: 235 GWTIAAYYLLHNLINRE--MGDREIPDEL-DEVDSTSPTTDGENINSIETS--------- 294
              +     LHN + +E    + + PDE+ +E D  +   +  N N I+           
Sbjct: 127 AGLVLTCAALHNFLRKECRSDEADFPDEVGNEGDVVNNEGNAMNTNEIDNEEPLEAQKQD 186

Query: 295 -DEWSWWRDELAEQIFSD 300
            +  + WR  +AE ++ D
Sbjct: 187 RENTNMWRKSMAEDMWKD 204

[Close]

BLAST of Lcy11g010870 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-11
Identity = 33/88 (37.50%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 56  FRLIHESDLRCREITRMDRRCFAILCTLLKTVAGLSGTEVVDVEEMVAMFLHILAHDVKN 115
           +++++  + +C E  RMD+  F  LC LL+T   L  T  + +E  +A+FL I+ H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 116 RVVRTQFARSGETVSRHFNTVFHGVLRL 144
           R V+  F  SGET+SRHFN V + V+ +
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAI 119

[Close]

BLAST of Lcy11g010870 vs. TAIR 10
Match: AT4G10890.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-08
Identity = 51/158 (32.28%), Postives = 68/158 (43.04%), Query Frame = 0


Query: 89  GLSGTEVVDVEEMVAMFLHILAHDVKNRVVR---TQFARSGETVSRHFNTVFHGVLRLHE 148
           GL   E V +EE VAMFL  +    KNR VR    ++ +S   V R  + V   +L+   
Sbjct: 7   GLQELENVYLEESVAMFLEEVD---KNRTVRDIVARYQQSLNVVKRKIDDVLSALLKFAA 66

Query: 149 VLLKKPEPVTTSCKDPRWKWFQRVPWHCNR----------------GEH----YHLSEWR 208
             LK  E   T       +     P   NR                G H    YHL ++ 
Sbjct: 67  DTLKSQESHDTKVLKYCARNESFSPHPSNRKYYLVNSVYPTTTGYLGPHRRILYHLGQF- 126

Query: 209 GAGNAPTTPKEFFNMKHSSARNVIERAFGLLKGRWAIV 224
           G G  P T +E FN KH   R+VI+R FG+ K +W I+
Sbjct: 127 GRGGPPVTVQELFNRKHLDLRSVIDRTFGVWKAKWRIL 160

The following BLAST results are available for this feature:

BLAST of Lcy11g010870 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g010870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BDX0	1.5e-98	51.94	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U476	1.5e-98	52.20	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TXW1	3.2e-98	51.68	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VHB0	1.2e-97	51.16	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VG29	2.7e-97	51.68	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lcy11g010870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048361.1	3.0e-98	52.20	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035620.1	3.0e-98	51.94	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0046727.1	6.7e-98	51.68	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0065736.1	2.5e-97	51.16	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065286.1	5.7e-97	51.68	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy11g010870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35695.1	4.9e-14	32.61	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G41980.1	2.3e-11	37.50	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT4G10890.1	1.1e-08	32.28	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 188..246 e-value: 6.0E-6 score: 26.0
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 37..285
None	No IPR available	PANTHER	PTHR22930:SF218	DUAL SPECIFICITY PHOSPHATASE DOMAIN PROTEIN	coord: 37..285

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g010870.1	Lcy11g010870.1	mRNA