Lcy11g010750 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g010750
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein ecdysoneless homolog
LocationChr11: 12475761 .. 12476742 (+)
RNA-Seq ExpressionLcy11g010750
SyntenyLcy11g010750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGTCTGTTCTAGGTGGTATATCAAAATCCATGCAGAAATTTGTCAAAAAGTTATCAAGCTATCAAGGAGTAGAGGTGTCTGATAACAGGTAAGTTAAATACGAATGAATCTAACTGTTAGTTTTCACATAGTAACTGGAAGGCCCCTGGTTGTAGCTGTTCTTACTTTGTGATTTTCCTTTCATAGCATCTCGCACAAGCTTAGTTTGATATTTTGGAAATGCTATTAATTTGATCTTCTTATATGTTAATGTATTAATATAATGGAAGCTTTTATATTTAAAGGGAGCCAGAAGACGTGAATATTGATGTAGACCGCTTCATTAAAGAGATGGAATCAGTCATGGGCCACCACACATCCATGGACGCTTCTACTGTTGCTGACAATGAAGATGAATCCTCTTCTTATTTGGATTTTTGGTAAATGAAATTGTCTTCCATAAACGCTATTCAGTTTTTGCCAAGTTATTGTCTTTCAGTTCAAAGGGCATAAAGCTATAACCTGGAAGAACACCATCCTCCATGCTTGTTCTGTTTGATTTTATTGTAATTTCTCCCCTTAGTAGCTATACCATTTAATATTGGTTATATACTTTTTGTGTATTCTTTTATTTATATTGGTGGTTTTGGCTACCGTGCCTGAAGAGGCAGTTTGGATTTTGTTTATGGATTATCATGAAGTTTATGATTTGGATTGTTTGAAATACTTCAATATCCCTCACTGGAATTTAAGTTTTTCTACGAAGTCCTGCAATCTTGCTGCTGAGGGATTGTTGAACCCTGTTTTTCATGCTTAATGGATTCTTTTTTATGTCATCAGTGAAATTATTTCTTATTAAAAAAAATCTTGAAGGATTCTTTAAATCATTAAGTTGCAATTGTTTTGTGCTTTTCAGATGAATCTGAAGACGATGAGACTGATGGTGCCACATACACGAATAATGTAGATGGAGAGAATAGGTTCATGGAATCCTAT

mRNA sequence

ATGGATGAGTCTGTTCTAGGTGGTATATCAAAATCCATGCAGAAATTTGTCAAAAAGTTATCAAGCTATCAAGGAGTAGAGGTGTCTGATAACAGGGAGCCAGAAGACGTGAATATTGATGTAGACCGCTTCATTAAAGAGATGGAATCAGTCATGGGCCACCACACATCCATGGACGCTTCTACTGTTGCTGACAATGAAGATGAATCCTCTTCTTATTTGGATTTTTGGTAAATGAAATTGTCTTCCATAAACGCTATTCAGTTTTTGCCAAGTTATTGTCTTTCAGTTCAAAGGGCATAAAGCTATAACCTGGAAGAACACCATCCTCCATGCTTGTTCTGTTTGATTTTATTGTAATTTCTCCCCTTAGTAGCTATACCATTTAATATTGGTTATATACTTTTTGTGTATTCTTTTATTTATATTGGTGGTTTTGGCTACCGTGCCTGAAGAGGCAGTTTGGATTTTGTTTATGGATTATCATGAAGTTTATGATTTGGATTGTTTGAAATACTTCAATATCCCTCACTGGAATTTAAGTTTTTCTACGAAGTCCTGCAATCTTGCTGCTGAGGGATTGTTGAACCCTGTTTTTCATGCTTAATGGATTCTTTTTTATGTCATCAGTGAAATTATTTCTTATTAAAAAAAATCTTGAAGGATTCTTTAAATCATTAAGTTGCAATTGTTTTGTGCTTTTCAGATGAATCTGAAGACGATGAGACTGATGGTGCCACATACACGAATAATGTAGATGGAGAGAATAGGTTCATGGAATCCTAT

Coding sequence (CDS)

ATGGATGAGTCTGTTCTAGGTGGTATATCAAAATCCATGCAGAAATTTGTCAAAAAGTTATCAAGCTATCAAGGAGTAGAGGTGTCTGATAACAGGGAGCCAGAAGACGTGAATATTGATGTAGACCGCTTCATTAAAGAGATGGAATCAGTCATGGGCCACCACACATCCATGGACGCTTCTACTGTTGCTGACAATGAAGATGAATCCTCTTCTTATTTGGATTTTTGGTAA

Protein sequence

MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHHTSMDASTVADNEDESSSYLDFW
Homology
[Close]
BLAST of Lcy11g010750 vs. ExPASy Swiss-Prot
Match: Q9LSM5 (Protein ecdysoneless homolog OS=Arabidopsis thaliana OX=3702 GN=At5g65490 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-10
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 0 

Query: 1   MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHH-TSMD 60
           M+   LG ISKSMQ+F+ K+SSY+G EV +NR+ ++V+IDVDRF+K++ES++G       
Sbjct: 454 MNNFDLGDISKSMQQFMHKVSSYKGAEVPENRDFKEVSIDVDRFMKDIESMLGSQGRDEQ 513

Query: 61  ASTVADNEDESSSYLDF 77
           A   +D  + SS  +DF
Sbjct: 514 ADDDSDGSEGSSMDMDF 530

[Close]
BLAST of Lcy11g010750 vs. ExPASy TrEMBL
Match: A0A6J1JBT1 (protein ecdysoneless homolog OS=Cucurbita maxima OX=3661 GN=LOC111483012 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.1e-25
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 1   MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHHTSMDA 60
           MDE  LG ISKSMQKFVKKLSS+QGVEVSDNREPEDVNIDVDRFIKEMESVM HHTSM+ 
Sbjct: 464 MDEPDLGDISKSMQKFVKKLSSFQGVEVSDNREPEDVNIDVDRFIKEMESVMSHHTSMET 523

Query: 61  STVADNEDESSSYLDF 77
           ST   NEDESSS LDF
Sbjct: 524 STDVQNEDESSSDLDF 539

[Close]
BLAST of Lcy11g010750 vs. ExPASy TrEMBL
Match: A0A5A7V3Y6 (Protein ecdysoneless-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002670 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.6e-25
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 0 

Query: 1   MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHHTSMDA 60
           MDES LG ISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDV+ FIKEMESVM HHTSM+ 
Sbjct: 463 MDESDLGDISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVECFIKEMESVMNHHTSMET 522

Query: 61  STVADNEDESSSYLDF 77
           +T A+NEDE+SS LDF
Sbjct: 523 TTDAENEDETSSDLDF 538

[Close]
BLAST of Lcy11g010750 vs. ExPASy TrEMBL
Match: A0A5D3D4P9 (Protein ecdysoneless-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00260 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.6e-25
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 0 

Query: 1   MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHHTSMDA 60
           MDES LG ISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDV+ FIKEMESVM HHTSM+ 
Sbjct: 463 MDESDLGDISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVECFIKEMESVMNHHTSMET 522

Query: 61  STVADNEDESSSYLDF 77
           +T A+NEDE+SS LDF
Sbjct: 523 TTDAENEDETSSDLDF 538

[Close]
BLAST of Lcy11g010750 vs. ExPASy TrEMBL
Match: A0A6J1ENT3 (protein ecdysoneless homolog OS=Cucurbita moschata OX=3662 GN=LOC111436027 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.6e-25
Identity = 64/76 (84.21%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 1   MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHHTSMDA 60
           MDE  LG ISKSMQKFVKKLSS+QGVEVSDNREPEDVNIDVDRFIKEMESVM HH SM+ 
Sbjct: 463 MDEPDLGDISKSMQKFVKKLSSFQGVEVSDNREPEDVNIDVDRFIKEMESVMSHHASMET 522

Query: 61  STVADNEDESSSYLDF 77
           ST  +NEDESSS LDF
Sbjct: 523 STDVENEDESSSDLDF 538

[Close]
BLAST of Lcy11g010750 vs. ExPASy TrEMBL
Match: A0A1S3BSL2 (protein ecdysoneless homolog OS=Cucumis melo OX=3656 GN=LOC103493274 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 1   MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHHTSMDA 60
           MDES LG ISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDV+ F KEMESVM HHTSM+ 
Sbjct: 463 MDESDLGDISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVECFFKEMESVMNHHTSMET 522

Query: 61  STVADNEDESSSYLDF 77
           +T A+NEDE+SS LDF
Sbjct: 523 TTDAENEDETSSDLDF 538

[Close]
BLAST of Lcy11g010750 vs. NCBI nr
Match: XP_038903141.1 (protein ecdysoneless homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 1   MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHHTSMDA 60
           MDES LG ISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVM HHTSM+ 
Sbjct: 463 MDESDLGDISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMNHHTSMET 522

Query: 61  STVADNEDESSSYLDF 77
           +T A+NEDESSS LDF
Sbjct: 523 TTDAENEDESSSDLDF 538

[Close]
BLAST of Lcy11g010750 vs. NCBI nr
Match: XP_038903140.1 (protein ecdysoneless homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 1   MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHHTSMDA 60
           MDES LG ISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVM HHTSM+ 
Sbjct: 463 MDESDLGDISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMNHHTSMET 522

Query: 61  STVADNEDESSSYLDF 77
           +T A+NEDESSS LDF
Sbjct: 523 TTDAENEDESSSDLDF 538

[Close]
BLAST of Lcy11g010750 vs. NCBI nr
Match: XP_022984863.1 (protein ecdysoneless homolog [Cucurbita maxima])

HSP 1 Score: 124.4 bits (311), Expect = 4.3e-25
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 1   MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHHTSMDA 60
           MDE  LG ISKSMQKFVKKLSS+QGVEVSDNREPEDVNIDVDRFIKEMESVM HHTSM+ 
Sbjct: 464 MDEPDLGDISKSMQKFVKKLSSFQGVEVSDNREPEDVNIDVDRFIKEMESVMSHHTSMET 523

Query: 61  STVADNEDESSSYLDF 77
           ST   NEDESSS LDF
Sbjct: 524 STDVQNEDESSSDLDF 539

[Close]
BLAST of Lcy11g010750 vs. NCBI nr
Match: XP_022929459.1 (protein ecdysoneless homolog [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 9.5e-25
Identity = 64/76 (84.21%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 1   MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHHTSMDA 60
           MDE  LG ISKSMQKFVKKLSS+QGVEVSDNREPEDVNIDVDRFIKEMESVM HH SM+ 
Sbjct: 463 MDEPDLGDISKSMQKFVKKLSSFQGVEVSDNREPEDVNIDVDRFIKEMESVMSHHASMET 522

Query: 61  STVADNEDESSSYLDF 77
           ST  +NEDESSS LDF
Sbjct: 523 STDVENEDESSSDLDF 538

[Close]
BLAST of Lcy11g010750 vs. NCBI nr
Match: TYK18527.1 (protein ecdysoneless-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 9.5e-25
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 0 

Query: 1   MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHHTSMDA 60
           MDES LG ISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDV+ FIKEMESVM HHTSM+ 
Sbjct: 463 MDESDLGDISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVECFIKEMESVMNHHTSMET 522

Query: 61  STVADNEDESSSYLDF 77
           +T A+NEDE+SS LDF
Sbjct: 523 TTDAENEDETSSDLDF 538

[Close]
BLAST of Lcy11g010750 vs. TAIR 10
Match: AT5G65490.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-11
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 0 

Query: 1   MDESVLGGISKSMQKFVKKLSSYQGVEVSDNREPEDVNIDVDRFIKEMESVMGHH-TSMD 60
           M+   LG ISKSMQ+F+ K+SSY+G EV +NR+ ++V+IDVDRF+K++ES++G       
Sbjct: 454 MNNFDLGDISKSMQQFMHKVSSYKGAEVPENRDFKEVSIDVDRFMKDIESMLGSQGRDEQ 513

Query: 61  ASTVADNEDESSSYLDF 77
           A   +D  + SS  +DF
Sbjct: 514 ADDDSDGSEGSSMDMDF 530

The following BLAST results are available for this feature:
BLAST of Lcy11g010750 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LSM53.1e-1046.75Protein ecdysoneless homolog OS=Arabidopsis thaliana OX=3702 GN=At5g65490 PE=1 S... [more]
BLAST of Lcy11g010750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JBT12.1e-2585.53protein ecdysoneless homolog OS=Cucurbita maxima OX=3661 GN=LOC111483012 PE=4 SV... [more]
A0A5A7V3Y64.6e-2584.21Protein ecdysoneless-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3D4P94.6e-2584.21Protein ecdysoneless-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A6J1ENT34.6e-2584.21protein ecdysoneless homolog OS=Cucurbita moschata OX=3662 GN=LOC111436027 PE=4 ... [more]
A0A1S3BSL21.3e-2482.89protein ecdysoneless homolog OS=Cucumis melo OX=3656 GN=LOC103493274 PE=4 SV=1[more]
BLAST of Lcy11g010750 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903141.11.7e-2688.16protein ecdysoneless homolog isoform X2 [Benincasa hispida][more]
XP_038903140.11.7e-2688.16protein ecdysoneless homolog isoform X1 [Benincasa hispida][more]
XP_022984863.14.3e-2585.53protein ecdysoneless homolog [Cucurbita maxima][more]
XP_022929459.19.5e-2584.21protein ecdysoneless homolog [Cucurbita moschata][more]
TYK18527.19.5e-2584.21protein ecdysoneless-like protein [Cucumis melo var. makuwa][more]
BLAST of Lcy11g010750 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65490.12.2e-1146.75FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010770Ecd familyPFAMPF07093SGT1coord: 5..71
e-value: 9.3E-12
score: 44.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g010750.1Lcy11g010750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus