Lcy11g009970 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g009970
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Tetratricopeptide-like helical
Location	Chr11: 11009152 .. 11009547 (-)
RNA-Seq Expression	Lcy11g009970
Synteny	Lcy11g009970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTGATTCTAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGGAACGAAATGGAGAACGACGTTCCGCCGCATTTGTTAGCGGAGGAAGAGGAAGACGACGACGACGAAAACGTAACGAGCACTGCAAGTAACGACTATGAGTTTGCTGCCACCGGATTCTTCGGCAGCTGGCGCCGGAAAGATGGCGGAGCTGATGGTGTCCATTGCATCTCGGGCATGTTGTTTTGTTTGAGCAGAAGCATAGAGAAGAAGGCTTCTAATGGGGTGAGCTCAGTGAGAATAATGGTGAGAACTATTGTAGGGTTTCTGATGGTGATGGCCATGAAGATAATTAGTGCTCAAAGATCCAAGTTGTGA

mRNA sequence

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTGATTCTAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGGAACGAAATGGAGAACGACGTTCCGCCGCATTTGTTAGCGGAGGAAGAGGAAGACGACGACGACGAAAACGTAACGAGCACTGCAAGTAACGACTATGAGTTTGCTGCCACCGGATTCTTCGGCAGCTGGCGCCGGAAAGATGGCGGAGCTGATGGTGTCCATTGCATCTCGGGCATGTTGTTTTGTTTGAGCAGAAGCATAGAGAAGAAGGCTTCTAATGGGGTGAGCTCAGTGAGAATAATGGTGAGAACTATTGTAGGGTTTCTGATGGTGATGGCCATGAAGATAATTAGTGCTCAAAGATCCAAGTTGTGA

Coding sequence (CDS)

ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTGATTCTAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGGAACGAAATGGAGAACGACGTTCCGCCGCATTTGTTAGCGGAGGAAGAGGAAGACGACGACGACGAAAACGTAACGAGCACTGCAAGTAACGACTATGAGTTTGCTGCCACCGGATTCTTCGGCAGCTGGCGCCGGAAAGATGGCGGAGCTGATGGTGTCCATTGCATCTCGGGCATGTTGTTTTGTTTGAGCAGAAGCATAGAGAAGAAGGCTTCTAATGGGGTGAGCTCAGTGAGAATAATGGTGAGAACTATTGTAGGGTTTCTGATGGTGATGGCCATGAAGATAATTAGTGCTCAAAGATCCAAGTTGTGA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASNGVSSVRIMVRTIVGFLMVMAMKIISAQRSKL

Homology

[Close]

BLAST of Lcy11g009970 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-37
Identity = 92/131 (70.23%), Postives = 108/131 (82.44%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYE 60
           MSVSLEALAMAGIDSNEW MDA+EWERNE++  VPPHLLA+EE+D+D E VTST SN Y 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISN-YC 60

Query: 61  FAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASNGVSSVRIMVRTIVGFLMVMA 120
           F   G FG WRR+D  ADG   I G+ + LS+ IEK+ASNG++SVRI+VRTI+GFLMVM 
Sbjct: 61  FRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 120

Query: 121 MKIISAQRSKL 132
           MKIISAQRSK+
Sbjct: 121 MKIISAQRSKM 129

[Close]

BLAST of Lcy11g009970 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.3e-35
Identity = 91/134 (67.91%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDD-DENVTSTASNDY 60
           MSVSLEALAMAGIDSNEWAMDAEEWERNE++  VPPHLLA+EE+D+D DE+VT++  ++Y
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  EFAATGFFGSWRRKDGGADG--VHCISGMLFCLSRSIEKKASNGVSSVRIMVRTIVGFLM 120
            F   G F  WR +D  ADG   H I G+   LS+ IEK+ASNG+SSVRI+VRTI+GFLM
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

Query: 121 VMAMKIISAQRSKL 132
           VM MKIISAQRSK+
Sbjct: 121 VMTMKIISAQRSKM 133

[Close]

BLAST of Lcy11g009970 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.2e-33
Identity = 83/119 (69.75%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYE 60
           MSVSLEALAMAGIDSNEW MDA+EWERNE++  VPPHLLA+EE+D+D E VTST SN Y 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISN-YC 60

Query: 61  FAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASNGVSSVRIMVRTIVGFLMVM 120
           F   G FG WRR+D  ADG H I G+ + LS+ IEK+ASNG++SVRI+VRTI+GFLMVM
Sbjct: 61  FRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVM 117

[Close]

BLAST of Lcy11g009970 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 74/130 (56.92%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYE 60
           MSVSLEALAMAGIDSNEWAMDAEEWERNEME D+PPHLLA+E   DD+E+  ST     +
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADE---DDEEDEMST-----K 60

Query: 61  FAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASNGVSSVRIMVRTIVGFLMVMA 120
           F AT    S  RKD G  GV C   +++ L +  EK+  N +SS+ I+   +VGFLM M 
Sbjct: 61  FPATRC--SCCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMT 120

Query: 121 MKIISAQRSK 131
           +KII+++RSK
Sbjct: 121 IKIIASKRSK 120

[Close]

BLAST of Lcy11g009970 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 51/103 (49.51%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERN--EMEND--VPPHLLAEEEEDDDDENVTSTAS 60
           M VSLEALAMAGIDSNEWAMDAEEW+ N  +MEND  +PPHLLA    D+D+EN+     
Sbjct: 1   MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLA----DEDEENI----- 60

Query: 61  NDYEFAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKAS 100
                AA     S  RKD G             L + +EK+AS
Sbjct: 61  -----AAKELCISGHRKDDGLVVFCAFRRSYAILRKMMEKRAS 89

[Close]

BLAST of Lcy11g009970 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-40
Identity = 94/131 (71.76%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYE 60
           MSVSLEALAMAGI SNEWAMDAEEWERNE+ENDVPPHLLA  +EDDDD+NVTST SN Y 
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLA--DEDDDDDNVTSTVSN-YS 60

Query: 61  FAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASNGVSSVRIMVRTIVGFLMVMA 120
           F   GFF S  R+DGGAD +HC  G+L  LS+S+EK+ASNG+SSVRI+VRTI+GFL+V  
Sbjct: 61  FPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKI 120

Query: 121 MKIISAQRSKL 132
           +KIISA  S +
Sbjct: 121 LKIISAHTSNM 128

[Close]

BLAST of Lcy11g009970 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.3 bits (443), Expect = 3.6e-40
Identity = 94/131 (71.76%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYE 60
           MSVSLEALAMAGI SNEWAMDAEEWERNE+ENDVPPHLLA  +EDDDD+NVTST SN Y 
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLA--DEDDDDDNVTSTVSN-YS 60

Query: 61  FAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASNGVSSVRIMVRTIVGFLMVMA 120
           F   GFF S RR+DGGA  +HC  G+L  LS+S+EK+ASNG+SSVRI+VRTI+GFL+V  
Sbjct: 61  FPVAGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKI 120

Query: 121 MKIISAQRSKL 132
           +KIISA  S +
Sbjct: 121 LKIISAHTSNM 128

[Close]

BLAST of Lcy11g009970 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 2.8e-37
Identity = 92/131 (70.23%), Postives = 108/131 (82.44%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYE 60
           MSVSLEALAMAGIDSNEW MDA+EWERNE++  VPPHLLA+EE+D+D E VTST SN Y 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISN-YC 60

Query: 61  FAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASNGVSSVRIMVRTIVGFLMVMA 120
           F   G FG WRR+D  ADG   I G+ + LS+ IEK+ASNG++SVRI+VRTI+GFLMVM 
Sbjct: 61  FRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 120

Query: 121 MKIISAQRSKL 132
           MKIISAQRSK+
Sbjct: 121 MKIISAQRSKM 129

[Close]

BLAST of Lcy11g009970 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 2.5e-33
Identity = 83/119 (69.75%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYE 60
           MSVSLEALAMAGIDSNEW MDA+EWERNE++  VPPHLLA+EE+D+D E VTST SN Y 
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISN-YC 60

Query: 61  FAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASNGVSSVRIMVRTIVGFLMVM 120
           F   G FG WRR+D  ADG H I G+ + LS+ IEK+ASNG++SVRI+VRTI+GFLMVM
Sbjct: 61  FRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVM 117

[Close]

BLAST of Lcy11g009970 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-24
Identity = 74/130 (56.92%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLAEEEEDDDDENVTSTASNDYE 60
           MSVSLEALAMAGIDSNEWAMDAEEWERNEME D+PPHLLA+E   DD+E+  ST     +
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADE---DDEEDEMST-----K 60

Query: 61  FAATGFFGSWRRKDGGADGVHCISGMLFCLSRSIEKKASNGVSSVRIMVRTIVGFLMVMA 120
           F AT    S  RKD G  GV C   +++ L +  EK+  N +SS+ I+   +VGFLM M 
Sbjct: 61  FPATRC--SCCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMT 120

Query: 121 MKIISAQRSK 131
           +KII+++RSK
Sbjct: 121 IKIIASKRSK 120

[Close]

BLAST of Lcy11g009970 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 2.6e-04
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 5  LEALAMAGIDSNEWAMDAEEWERNEMENDVPPHLLA-----EEEEDDDDEN 51
          +EALAMAG+D  EW +  EEWE    E+ VP HLLA     EE+E+D  +N
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWEL--QESVVPLHLLADDFKEEEQEEDHQDN 49

The following BLAST results are available for this feature:

BLAST of Lcy11g009970 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g009970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZU0	1.4e-37	70.23	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KWE7	8.3e-35	67.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
A0A5A7TS68	1.2e-33	69.75	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1FX98	1.0e-24	56.92	uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A0A0KU90	1.6e-09	49.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]

BLAST of Lcy11g009970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015383.1	2.1e-40	71.76	hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577295.1	3.6e-40	71.76	hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK16880.1	2.8e-37	70.23	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
KAA0044707.1	2.5e-33	69.75	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
XP_022943015.1	2.1e-24	56.92	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]

BLAST of Lcy11g009970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22320.1	2.6e-04	50.98	unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g009970.1	Lcy11g009970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane