Lcy11g009960 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g009960
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionTetratricopeptide-like helical
LocationChr11: 11005581 .. 11005826 (-)
RNA-Seq ExpressionLcy11g009960
SyntenyLcy11g009960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCTTTAGAAGCTCTGGCGATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTCAAGAATGGGGAAGCAATGTTGCAATGGAGAATGACGTTCCACCGCATTTATTAGCCGATGAAGATGAAGACGAAGACGAAGAAGAAGAAGAAAATATAACAAGTACAGCCAGTAACTATACGATTCCGGTCGCTGGAAAGATGACGGTGGTGATGGTGTGTACTGCTTTCCGGCGATGA

mRNA sequence

ATGTCGGTTTCTTTAGAAGCTCTGGCGATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTCAAGAATGGGGAAGCAATGTTGCAATGGAGAATGACGTTCCACCGCATTTATTAGCCGATGAAGATGAAGACGAAGACGAAGAAGAAGAAGAAAATATAACAAGTACAGCCAGTAACTATACGATTCCGGTCGCTGGAAAGATGACGGTGGTGATGGTGTGTACTGCTTTCCGGCGATGA

Coding sequence (CDS)

ATGTCGGTTTCTTTAGAAGCTCTGGCGATGGCGGGGATTGATTCCAATGAGTGGGCTATGGATGCTCAAGAATGGGGAAGCAATGTTGCAATGGAGAATGACGTTCCACCGCATTTATTAGCCGATGAAGATGAAGACGAAGACGAAGAAGAAGAAGAAAATATAACAAGTACAGCCAGTAACTATACGATTCCGGTCGCTGGAAAGATGACGGTGGTGATGGTGTGTACTGCTTTCCGGCGATGA

Protein sequence

MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTASNYTIPVAGKMTVVMVCTAFRR
Homology
BLAST of Lcy11g009960 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 47/68 (69.12%), Postives = 52/68 (76.47%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTAS 60
          MSVSLEALAMAGIDSNEWAMDA+EW  N    + VPPHLLADE++DED +E    TST S
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERNEI--DVVPPHLLADEEDDEDGDEHVT-TSTIS 60

Query: 61 NYTIPVAG 69
          NY  PV G
Sbjct: 61 NYCFPVDG 65

BLAST of Lcy11g009960 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.0e-12
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDE 50
          MSVSLEALAMAGIDSNEWAMDA+EW  N  ME D+PPHLLADED++EDE
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERN-EMEKDIPPHLLADEDDEEDE 48

BLAST of Lcy11g009960 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 46/68 (67.65%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTAS 60
          MSVSLEALAMAGIDSNEW MDAQEW  N    + VPPHLLADE++DED    E +TST S
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEI--DVVPPHLLADEEDDED---GEYVTSTIS 60

Query: 61 NYTIPVAG 69
          NY   V G
Sbjct: 61 NYCFRVDG 63

BLAST of Lcy11g009960 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 46/68 (67.65%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTAS 60
          MSVSLEALAMAGIDSNEW MDAQEW  N    + VPPHLLADE++DED    E +TST S
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEI--DVVPPHLLADEEDDED---GEYVTSTIS 60

Query: 61 NYTIPVAG 69
          NY   V G
Sbjct: 61 NYCFRVDG 63

BLAST of Lcy11g009960 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.3e-09
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWGSNV-AMEND--VPPHLLADEDEDEDEEEE 53
          M VSLEALAMAGIDSNEWAMDA+EW +N   MEND  +PPHLLADEDE+    +E
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKE 55

BLAST of Lcy11g009960 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 5.0e-16
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTAS 60
          MSVSLEALAMAGI SNEWAMDA+EW  N  +ENDVPPHLLADED+D+D     N+TST S
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERN-EIENDVPPHLLADEDDDDD-----NVTSTVS 60

Query: 61 NYTIPVAG 69
          NY+ PVAG
Sbjct: 61 NYSFPVAG 62

BLAST of Lcy11g009960 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 5.0e-16
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTAS 60
          MSVSLEALAMAGI SNEWAMDA+EW  N  +ENDVPPHLLADED+D+D     N+TST S
Sbjct: 1  MSVSLEALAMAGITSNEWAMDAEEWERN-EIENDVPPHLLADEDDDDD-----NVTSTVS 60

Query: 61 NYTIPVAG 69
          NY+ PVAG
Sbjct: 61 NYSFPVAG 62

BLAST of Lcy11g009960 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDE 50
          MSVSLEALAMAGIDSNEWAMDA+EW  N  ME D+PPHLLADED++EDE
Sbjct: 1  MSVSLEALAMAGIDSNEWAMDAEEWERN-EMEKDIPPHLLADEDDEEDE 48

BLAST of Lcy11g009960 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 46/68 (67.65%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTAS 60
          MSVSLEALAMAGIDSNEW MDAQEW  N    + VPPHLLADE++DED    E +TST S
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEI--DVVPPHLLADEEDDED---GEYVTSTIS 60

Query: 61 NYTIPVAG 69
          NY   V G
Sbjct: 61 NYCFRVDG 63

BLAST of Lcy11g009960 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 46/68 (67.65%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEEENITSTAS 60
          MSVSLEALAMAGIDSNEW MDAQEW  N    + VPPHLLADE++DED    E +TST S
Sbjct: 1  MSVSLEALAMAGIDSNEWGMDAQEWERNEI--DVVPPHLLADEEDDED---GEYVTSTIS 60

Query: 61 NYTIPVAG 69
          NY   V G
Sbjct: 61 NYCFRVDG 63

BLAST of Lcy11g009960 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.2e-05
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 5  LEALAMAGIDSNEWAMDAQEWGSNVAMENDVPPHLLADEDEDEDEEEE 53
          +EALAMAG+D  EW +  +EW      E+ VP HLLAD+ ++E++EE+
Sbjct: 1  MEALAMAGVDYQEWGLSIEEW---ELQESVVPLHLLADDFKEEEQEED 45

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWE71.6e-1269.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A6J1FX988.0e-1281.63uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
A0A5D3CZU01.0e-1167.65Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TS681.0e-1167.65Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A0A0KU906.3e-0970.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG7015383.15.0e-1673.53hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577295.15.0e-1673.53hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022943015.11.6e-1181.63uncharacterized protein LOC111447880 [Cucurbita moschata][more]
TYK16880.12.2e-1167.65Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
KAA0044707.12.2e-1167.65Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT2G22320.13.2e-0547.92unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g009960.1Lcy11g009960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane