Lcy11g009870 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g009870
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionTetratricopeptide-like helical
LocationChr11: 10948660 .. 10948890 (-)
RNA-Seq ExpressionLcy11g009870
SyntenyLcy11g009870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCTTTGGAAGCTTTGGCAATGGCGGAGGTTGATTTTAATGAGTGGGCTCTGGACGCTGAAGAATGGGAAACAAACCAAATGGACAACAATGTGCCACCGCATTTAGTAGCCGATGAAGAAGAAGACAAGTTTCCGGCCGCCGGATTCTTCCGCAGATGGCGGCGGAAGATGGCGGAGCTGGTGGTGTTCGTTGCAATTCCGGTATTATGTGTCACTTCACTTTAG

mRNA sequence

ATGTTTTCTTTGGAAGCTTTGGCAATGGCGGAGGTTGATTTTAATGAGTGGGCTCTGGACGCTGAAGAATGGGAAACAAACCAAATGGACAACAATGTGCCACCGCATTTAGTAGCCGATGAAGAAGAAGACAAGTTTCCGGCCGCCGGATTCTTCCGCAGATGGCGGCGGAAGATGGCGGAGCTGGTGGTGTTCGTTGCAATTCCGGTATTATGTGTCACTTCACTTTAG

Coding sequence (CDS)

ATGTTTTCTTTGGAAGCTTTGGCAATGGCGGAGGTTGATTTTAATGAGTGGGCTCTGGACGCTGAAGAATGGGAAACAAACCAAATGGACAACAATGTGCCACCGCATTTAGTAGCCGATGAAGAAGAAGACAAGTTTCCGGCCGCCGGATTCTTCCGCAGATGGCGGCGGAAGATGGCGGAGCTGGTGGTGTTCGTTGCAATTCCGGTATTATGTGTCACTTCACTTTAG

Protein sequence

MFSLEALAMAEVDFNEWALDAEEWETNQMDNNVPPHLVADEEEDKFPAAGFFRRWRRKMAELVVFVAIPVLCVTSL
Homology
BLAST of Lcy11g009870 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 3  SLEALAMAEVDFNEWALDAEEWETNQMDNNVPPHLVADEEED------KFPA 49
          SLEALAMA +D NEWA+DAEEWE N+M+ ++PPHL+ADE+++      KFPA
Sbjct: 4  SLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPA 55

BLAST of Lcy11g009870 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.9e-09
Identity = 37/69 (53.62%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 3  SLEALAMAEVDFNEWALDAEEWETNQMDNNVPPHLVADEEEDK---------------FP 57
          SLEALAMA +D NEWA+DAEEWE N++D  VPPHL+ADEE+D+               FP
Sbjct: 4  SLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNYCFP 63

BLAST of Lcy11g009870 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.9e-09
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 3  SLEALAMAEVDFNEWALDAEEWETN--QMDNN--VPPHLVADEEEDKFPAAGFFRRWRRK 62
          SLEALAMA +D NEWA+DAEEW+TN  QM+N+  +PPHL+ADE+E+   A        RK
Sbjct: 4  SLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENIAAKELCISGHRK 63

Query: 63 MAELVVFVA 68
             LVVF A
Sbjct: 64 DDGLVVFCA 72

BLAST of Lcy11g009870 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.6e-08
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 3  SLEALAMAEVDFNEWALDAEEWETNQMDNNVPPHLVADEEEDK-------------FPAA 59
          SLEALAMA +D NEW +DA+EWE N++D  VPPHL+ADEE+D+             F   
Sbjct: 4  SLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISNYCFRVD 63

BLAST of Lcy11g009870 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.6e-08
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 3  SLEALAMAEVDFNEWALDAEEWETNQMDNNVPPHLVADEEEDK-------------FPAA 59
          SLEALAMA +D NEW +DA+EWE N++D  VPPHL+ADEE+D+             F   
Sbjct: 4  SLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISNYCFRVD 63

BLAST of Lcy11g009870 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 3  SLEALAMAEVDFNEWALDAEEWETNQMDNNVPPHLVADEEED-----------KFPAAGF 59
          SLEALAMA +  NEWA+DAEEWE N+++N+VPPHL+ADE++D            FP AGF
Sbjct: 4  SLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGF 63

BLAST of Lcy11g009870 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.3 bits (181), Expect = 5.0e-10
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0

Query: 3  SLEALAMAEVDFNEWALDAEEWETNQMDNNVPPHLVADEEED-----------KFPAAGF 59
          SLEALAMA +  NEWA+DAEEWE N+++N+VPPHL+ADE++D            FP AGF
Sbjct: 4  SLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGF 63

BLAST of Lcy11g009870 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0

Query: 3  SLEALAMAEVDFNEWALDAEEWETNQMDNNVPPHLVADEEED------KFPA 49
          SLEALAMA +D NEWA+DAEEWE N+M+ ++PPHL+ADE+++      KFPA
Sbjct: 4  SLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPA 55

BLAST of Lcy11g009870 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 3  SLEALAMAEVDFNEWALDAEEWETNQMDNNVPPHLVADEEEDK-------------FPAA 59
          SLEALAMA +D NEW +DA+EWE N++D  VPPHL+ADEE+D+             F   
Sbjct: 4  SLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISNYCFRVD 63

BLAST of Lcy11g009870 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 3  SLEALAMAEVDFNEWALDAEEWETNQMDNNVPPHLVADEEEDK-------------FPAA 59
          SLEALAMA +D NEW +DA+EWE N++D  VPPHL+ADEE+D+             F   
Sbjct: 4  SLEALAMAGIDSNEWGMDAQEWERNEID-VVPPHLLADEEDDEDGEYVTSTISNYCFRVD 63

BLAST of Lcy11g009870 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.1e-04
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 4  LEALAMAEVDFNEWALDAEEWETNQMDNNVPPHLVADEEEDK 46
          +EALAMA VD+ EW L  EEWE    ++ VP HL+AD+ +++
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWEL--QESVVPLHLLADDFKEE 40

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FX984.5e-0961.54uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
A0A0A0KWE75.9e-0953.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A0A0KU905.9e-0956.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1[more]
A0A5D3CZU06.6e-0850.72Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TS686.6e-0850.72Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
Match NameE-valueIdentityDescription
KAG6577295.11.3e-1055.22hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7015383.15.0e-1053.73hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022943015.19.4e-0961.54uncharacterized protein LOC111447880 [Cucurbita moschata][more]
TYK16880.11.4e-0750.72Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
KAA0044707.11.4e-0750.72Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT2G22320.11.1e-0450.00unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g009870.1Lcy11g009870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane