Lcy11g008840 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g008840
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionTransforming growth factor-beta receptor-associated protein 1 isoform X1
LocationChr11: 9387233 .. 9388557 (-)
RNA-Seq ExpressionLcy11g008840
SyntenyLcy11g008840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGATTTTTTGGGGTGGGAGTTTGCATGTGCTGTTTTGGAAGGTAATAATTCATGAAGAGATAAACGAGAGAGAAAGTTGAAGCCACTAACTCAATATGCTTTATTATAGAATTTGTGCATTGTTTACTACAACTCAGGCGTGCAAAGATGTGTTGCTAGGAATGGATTACTATTCCTTTTAACTTTCAAGGATTTGTGTGACGTTAAATCTTCTCCTTACCATTGGTTGCAGTGGCAGATCTAAGATTTTATGTTAGAAGGAGCACAAGTTCATATAAATGTAACTTTAGAAGCATTGATACAATAAATTACCTAATATCGATTAGGTTAAATTACGAGTTTAGTCATTGAACTTTTTAAGTTTGTGTCTATGGTCCCTAAACTTAAAAATGTGTCTAATAGAATTTTAAACTTTCAATTTTATGCTTGATAGGTGGGACTTATTTGACATTTTTCAAAATTCACATACTAAACACAAAATTGAAAGTTTATAGTTTCATTAGACATAAAATTCAATTATGAATGTTTAGAATATGGATACAATTATTAGTTTGGAGTTTTAATAATTGATCCCAAAGTTTAGGGGTAGAATTGATTTTCTTGTCTAATTTTTTTAAAAGAAACTGATAAAACTCATTTCATATTCTTTTTAGGTTAAAATATACCATTTTGGTCATTGTATTTTGGAACTATTTCTATTTTATTCTCAATAATTCCAAATGTCCAAATATAATCCTTGTTCTTTTAATAATCTTAAAATTAGTCTATGGTTAACTTTTTCAAAACAAGCTGTTTATAGTCTCTATTAGCTTTCGCTTTATAAATTTTGAAAACATATTAACAATGGTGTCTTTTCTTAAGTGAAAATTATGATTATTAGTTTACCAAGTTCTATAAAAAGTAACTTCAAGATCTTCTCATCAACCAGATTAACAAAAGTATTGAAGAATCTAGTGGGTTGTTTGATTCGTACCAGTTTCGTGCTCCCCGCCCTCAGAAGGAGAACCTCCCGAGTCATGCCGTTTGGTCAGCCCCTCCCCTCGATTGCTGGAAGCTTAATTCAGACTCTTCTTGGAACCCATCCTTGAACAGAGGCGGTGTAGGGTGGATAGTCCGTGACTCTGGCAGATCTCCTATTTGCGCGGGGTTGGAATTGGTCAAGGAGCAATGGCCTATCTTCCTTCTTGAGGCGAAAGCGATGCTGTTAGGGTTAAGAAGCTTACATGCAATCCTGAGTTGCCGTAATGTATTGAAGTTGAGTCGGACTGTGCTAATCTCATCAAGTTCCTGGAGAAGCCTAAAGACGATCTCTCCGGCGTGA

mRNA sequence

ATGAGGATTTTTTGGGGTGGGAGTTTGCATGTGCTGTTTTGGAAGATTAACAAAAGTATTGAAGAATCTAGTGGGTTGTTTGATTCGTACCAGTTTCGTGCTCCCCGCCCTCAGAAGGAGAACCTCCCGAGTCATGCCGTTTGGTCAGCCCCTCCCCTCGATTGCTGGAAGCTTAATTCAGACTCTTCTTGGAACCCATCCTTGAACAGAGGCGGTGTAGGGTGGATAGTCCGTGACTCTGGCAGATCTCCTATTTGCGCGGGGTTGGAATTGGTCAAGGAGCAATGGCCTATCTTCCTTCTTGAGGCGAAAGCGATGCTGTTAGGGTTAAGAAGCTTACATGCAATCCTGAGTTGCCGTAATGTATTGAAGTTGAGTCGGACTGTGCTAATCTCATCAAGTTCCTGGAGAAGCCTAAAGACGATCTCTCCGGCGTGA

Coding sequence (CDS)

ATGAGGATTTTTTGGGGTGGGAGTTTGCATGTGCTGTTTTGGAAGATTAACAAAAGTATTGAAGAATCTAGTGGGTTGTTTGATTCGTACCAGTTTCGTGCTCCCCGCCCTCAGAAGGAGAACCTCCCGAGTCATGCCGTTTGGTCAGCCCCTCCCCTCGATTGCTGGAAGCTTAATTCAGACTCTTCTTGGAACCCATCCTTGAACAGAGGCGGTGTAGGGTGGATAGTCCGTGACTCTGGCAGATCTCCTATTTGCGCGGGGTTGGAATTGGTCAAGGAGCAATGGCCTATCTTCCTTCTTGAGGCGAAAGCGATGCTGTTAGGGTTAAGAAGCTTACATGCAATCCTGAGTTGCCGTAATGTATTGAAGTTGAGTCGGACTGTGCTAATCTCATCAAGTTCCTGGAGAAGCCTAAAGACGATCTCTCCGGCGTGA

Protein sequence

MRIFWGGSLHVLFWKINKSIEESSGLFDSYQFRAPRPQKENLPSHAVWSAPPLDCWKLNSDSSWNPSLNRGGVGWIVRDSGRSPICAGLELVKEQWPIFLLEAKAMLLGLRSLHAILSCRNVLKLSRTVLISSSSWRSLKTISPA
Homology
BLAST of Lcy11g008840 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.6e-08
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 8   SLHVLFWKINKSIEESSGLFDSYQFRAPRPQ-KENLPSHAVWSAPPLDCWKLNSDSSWNP 67
           S   +  ++ K + ES     SYQ         + L +   W  PP+  W LN+D+SW+ 
Sbjct: 35  SFSTMIQQLTKFVTES-----SYQSETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSD 94

Query: 68  SLNRGGVGWIVRDSGRSPICAGLELVKEQWPIFLLEAKAMLLGLRSL 114
           S +RGG+GWI+R      + AG   V+    + LLEA A+L GLR+L
Sbjct: 95  STHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNL 136

BLAST of Lcy11g008840 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.2e-07
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 39  KENLPSHAV-WSAPPLDCWKLNSDSSWNPSLNRGGVGWIVRDSGRSPICAGLELVKEQWP 98
           +ENL    V WSAPP +CWKLN+D+SW+     GG+GWI+ D     + AG   ++E+  
Sbjct: 95  RENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKE 154

Query: 99  IFLLEAKAMLLGLRSLH 115
           I  LE   ++ GL+ ++
Sbjct: 155 INALELMTIIRGLQFIN 171

BLAST of Lcy11g008840 vs. ExPASy TrEMBL
Match: A0A0A0M3X8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G715220 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-06
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 39  KENLPSHAVWSAPPLDCWKLNSDSSWNPSLNRGGVGWIVRDSGRSPICAGLE--LVKEQW 98
           KE+  SH  WS P +  WKL  D+SW  S   GG+GW+VRDS  SP+  G E  +V+   
Sbjct: 22  KESPLSHLCWSLPVVRAWKLYFDASWVDSAGYGGIGWLVRDSAGSPVLVGCEKSVVEGDL 81

Query: 99  PIFLL 102
           P+ ++
Sbjct: 82  PLLVI 86

BLAST of Lcy11g008840 vs. ExPASy TrEMBL
Match: A0A5D3E1D7 (Transforming growth factor-beta receptor-associated protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00380 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.0e-06
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 34  APRPQKENLPSHAVWSAPPLDCWKLNSDSSWNPSLNRGGVGWIVRDSGRSPICAGLE--L 93
           +P  ++E+  SH+ WS P +  WKLN D+ W  S + GG+GW+V DS  SPI  G E  +
Sbjct: 41  SPLVRRESPSSHSCWSLPIVGVWKLNFDAYWVDSPSCGGIGWLVCDSVGSPILVGCEKSV 100

Query: 94  VKEQWPIFLL 102
           +K   P+ ++
Sbjct: 101 IKGDLPLHVI 110

BLAST of Lcy11g008840 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 0

Query: 46  AVWSAPPLDCWKLNSDSSWNPSLNRGGVGWIVRDSGRSPICAGLELVKEQWPIFLLEAKA 105
           A W  P  + WKLN+D++W    N GG+GWI+RD     I A   +++ +  I  LE  A
Sbjct: 77  ARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMA 136

Query: 106 MLLGLRSL 114
           +  GLR++
Sbjct: 137 ICEGLRAI 144

BLAST of Lcy11g008840 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 8   SLHVLFWKINKSIEESSGLFDSYQFRAPRPQ-KENLPSHAVWSAPPLDCWKLNSDSSWNP 67
           S   +  ++ K + ES     SYQ         + L +   W  PP+  W LN+D+SW+ 
Sbjct: 35  SFSTMIQQLTKFVTES-----SYQSETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSD 94

Query: 68  SLNRGGVGWIVRDSGRSPICAGLELVKEQWPIFLLEAKAMLLGLRSL 114
           S +RGG+GWI+R      + AG   V+    + LLEA A+L GLR+L
Sbjct: 95  STHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNL 136

BLAST of Lcy11g008840 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 39  KENLPSHAV-WSAPPLDCWKLNSDSSWNPSLNRGGVGWIVRDSGRSPICAGLELVKEQWP 98
           +ENL    V WSAPP +CWKLN+D+SW+     GG+GWI+ D     + AG   ++E+  
Sbjct: 95  RENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKE 154

Query: 99  IFLLEAKAMLLGLRSLH 115
           I  LE   ++ GL+ ++
Sbjct: 155 INALELMTIIRGLQFIN 171

BLAST of Lcy11g008840 vs. NCBI nr
Match: KAE8653679.1 (hypothetical protein Csa_007320, partial [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 8.3e-06
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 39  KENLPSHAVWSAPPLDCWKLNSDSSWNPSLNRGGVGWIVRDSGRSPICAGLE--LVKEQW 98
           KE+  SH  WS P +  WKL  D+SW  S   GG+GW+VRDS  SP+  G E  +V+   
Sbjct: 1   KESPLSHLCWSLPVVRAWKLYFDASWVDSAGYGGIGWLVRDSAGSPVLVGCEKSVVEGDL 60

Query: 99  PIFLL 102
           P+ ++
Sbjct: 61  PLLVI 65

BLAST of Lcy11g008840 vs. NCBI nr
Match: KAA0043266.1 (transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK29330.1 transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-05
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 34  APRPQKENLPSHAVWSAPPLDCWKLNSDSSWNPSLNRGGVGWIVRDSGRSPICAGLE--L 93
           +P  ++E+  SH+ WS P +  WKLN D+ W  S + GG+GW+V DS  SPI  G E  +
Sbjct: 41  SPLVRRESPSSHSCWSLPIVGVWKLNFDAYWVDSPSCGGIGWLVCDSVGSPILVGCEKSV 100

Query: 94  VKEQWPIFLL 102
           +K   P+ ++
Sbjct: 101 IKGDLPLHVI 110

BLAST of Lcy11g008840 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-05
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 0

Query: 46  AVWSAPPLDCWKLNSDSSWNPSLNRGGVGWIVRDSGRSPICAGLELVKEQWPIFLLEAKA 105
           A W  P  + WKLN+D++W    N GG+GWI+RD     I A   +++ +  I  LE  A
Sbjct: 77  ARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMA 136

Query: 106 MLLGLRSL 114
           +  GLR++
Sbjct: 137 ICEGLRAI 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNV95.6e-0835.51uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CQG06.2e-0740.26uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A0A0M3X84.0e-0643.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G715220 PE=4 SV=1[more]
A0A5D3E1D79.0e-0640.00Transforming growth factor-beta receptor-associated protein 1 isoform X1 OS=Cucu... [more]
A0A6J1DSV11.5e-0538.24uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
Match NameE-valueIdentityDescription
XP_022155262.11.2e-0735.51uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143317.11.3e-0640.26uncharacterized protein LOC111013216 [Momordica charantia][more]
KAE8653679.18.3e-0643.08hypothetical protein Csa_007320, partial [Cucumis sativus][more]
KAA0043266.11.9e-0540.00transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumi... [more]
XP_022156777.13.2e-0538.24uncharacterized protein LOC111023608 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g008840.1Lcy11g008840.1mRNA