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Lcy11g008700 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTGCGTCCCTCTTTCCTTCGGTCTTCTTCGTTATTCTTCGCCACTTCGCCGCCGACCTCGCCCTTCTCCTTCGGTCTTCTTCTCCGCCTCCGGTAAGCTCTCTCTCTGTCGGTCTCTCTTCCTCTTTCTCTCTCCCCGAATGATTCCTCTCTCTCTCCATTTCACTCCTCACTTGTTTCTCCTCTCTCCATCTCGCTCTCAGTTTCGGTTTGTAATTAGTCTCTCTTTCTCTCTTCTTTTAGTTGCATCGTTTCCTCATTTCTGCTGATTTTTTGGTGCAGTTTCCCCGTCAGTGTGTTCTTAAAATATTGCATCTGGCTGAAACATTATTACTTGAAAGTTTATGAGTATATATCTTTGATTTTCGGGATGAAAATAGTTCAAATTTTTATTTTCCTGTGTTTATCAGTGCGCTGCACTGCAATCATTCGAGACCTTGATTGAAGAGTTAACATTCTCGTTGTGTATTTTCTTGAACGATTTAGCCTAGACTGTACTACTGTAGTTTATCTGGAACATTATGTTCTTTAGGGTAACTTTAGGCACATCTTATTTGATGAGATTATGCTGGTACGGTTGTAATTACTGTTATTCTTGCTATGTGCTTGTGGTCATGTATTTTTCATGTATTTGCAGCTTCACTGTAAGGACATTGCGGAAGATCTACCTCTAGTTAAAAGATGAGGTATTATGTTTTTTTCAGTATTTCCATATCTTTTTGTACGCACATCTTAGTCTGCTATTTGTAAATTCTTACGTACTGATGCCTTTCATGTCCTCCCTTTTTTGTCTTGGATTGCAGCCGACCAATGGAGGAAGATGTAAGTTTCTTCAGTCTTTTATGCTTTCACTTTCAGTTCTTTCATCTAATACGTGTTTCCAAATTGGTTCAGCCTTTGTCTTATGCACAAGTGTGAATGAATCTTGTCTTACTCTTGAATCATTGTAGAAGCTTTTTCATTGTATTATATCTGCTGCTCCTGTTCCTTTTCATCGACACGATTCTTTTGAGTTGGATGAAAATGTTATCCTTCATACTGAAAAAGTTTGATTTCCCTATCTAACAGTCATGAGCCTTCGGGTCAGCTTGTTTTTACCTCTACTAATGCCCATGTTCGACTATCTCTTTAAATTTATTAATATTGGAAAACATTTTATCATGGGATTTTTTTTTTGGCCTTAGGTCAGCTTTATGTCAATTTTAAAAGTTTCCAAGTTCTGCAGGTTGAATGATATTTTGATATATTTAAAGTTGATGCTTGAATACTAGTCTACTAGATATTTTTAGATTTTTAGCTTGAAGTAATGTTTGGAAGTTATGATTTGTAGTTATCTATTTAGGAAACCCTTTGAAAAATTCACCTGGCTTTTGTTGTTTGGACTTGGAAGGTTAGATATTTGTGATAACTTAAAAAGGAAAAGATCTTATTTTCTATGTCCCCTTGGTATATTATGTGAATGATGTTGTTTCCTTGAATCATTTAATTATCCACTGAGTTTGCTAATGCGCTTTAGTTTTGGTTTTTATGAGTCTGGAGTATCTTGAATTTCTCTAGTAGAGCAGTACCAGTTCTATGCTTGGAATTCCTTGGTAGTTGGTCTTCAAAAAGGGTTTTATTTTTTATTTTTTACTTCTCTTTTTAAAATATATTTGTTTCTGTTAAATTTCTGCTATCTTTTGGGTGCTCTGGTTGGCAAGAAACAATATGATTTTTTAAGACAAGTTTTTTACCTTTTGGAGTAAAACTGATGATCTTTAGATTCAGGTCTGTTTTTTCTTTCAAATTTGTTTCTATGGTTGATCAGTGTGATTTTTTCCCTTTCCATTTGATGATTTTTTACCAACTTCTTACTCTTTTGCAATCTATTTATATATTTCTAATAAAAAAAAGTGATAACTATGACATTTCTATGAAGCCCATTTCTTTTAATCTATAAATAACTATATAGGATCTGTTTCCTTCTAATCATTTCTAGTGTTAGCTCAATGTTTTCTTTTTCTAGAAACCTTTTTTTTTTTTTAAATATTTCCAGTCCCCCTTCCCCAGTATGTTCCTTTGGGGTTGTACTGCAAAATCCTTGGACTTCTTCAATTGTGTTCTATTCATTTTTTGACTTCAAACTCTACTGAAGTGTTACTTACAGCACCATTTGGAAGTACTTACTTTGAATCCTCTGCAGGCTAGCAAGAATGAGGAAGAGGAATTCAACACGGGTCCGCTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCTTTGTTTGTGTGTGTTTAACAGTTGTCCTTGTAATTCACAGGCAGAACTTTTTAGGTAAAAACCCTCTATATGTTTTGGTCCTCCTTGACAGGTTCTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTGCGTTTCATTGATGTGTGCTTACTCTTTTACTTGCTTTATTATATAGACATGAGTTTTACGTATCTTATGTATTATTACTATGACTAGGTCCCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCCAAGTAAGAAAAGTTGGCCAGTGTTCAGTTTGCATTCTTGAGTTGACTCCATATGCCTGCCAATCTTCTTGCTTGATGTACCCCCTGTGATAAACATCAAACTTTCATTTGATAGCCTGAACTTCTGCTAAGCTTGGAGCTATCTATATCAGTTTGTAGTTCATTTTAAATTTTCTTTTCTTGCAAACCGTTTGCCAAATACTGTAACTCTAGAAAGTGTATCTGTTTAGGTATCAGTGATCATTTAGTACAAATGCAATATCTGTTTTTAACGTGTATTGAATAGAGTTTGTCTTTGCAACTTGGGACATCATTTATTTTGACCAGCAAGTGATATTATCATTCAGAATTATGACTTATGAGGATCTTTCGTGCTTGGTAGATGATGTGCTGTTCCTCGAGTCTTGGTCCTTGTTGCTTATGTTCATGTGTACGCCCCAAGAAATTAAATTTCCATTGACATGTCAATATTTTCTCTGTTTATAAATCAAATTGTTTGACAATCATC TTGCGTCCCTCTTTCCTTCGGTCTTCTTCGTTATTCTTCGCCACTTCGCCGCCGACCTCGCCCTTCTCCTTCGGTCTTCTTCTCCGCCTCCGCTTCACTGTAAGGACATTGCGGAAGATCTACCTCTAGTTAAAAGATGAGCCGACCAATGGAGGAAGATGCTAGCAAGAATGAGGAAGAGGAATTCAACACGGGTCCGCTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTCCCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCCAAGTAAGAAAAGTTGGCCAGTGTTCAGTTTGCATTCTTGAGTTGACTCCATATGCCTGCCAATCTTCTTGCTTGATGTACCCCCTGTGATAAACATCAAACTTTCATTTGATAGCCTGAACTTCTGCTAAGCTTGGAGCTATCTATATCAGTTTGTAGTTCATTTTAAATTTTCTTTTCTTGCAAACCGTTTGCCAAATACTGTAACTCTAGAAAGTGTATCTGTTTAGGTATCAGTGATCATTTAGTACAAATGCAATATCTGTTTTTAACGTGTATTGAATAGAGTTTGTCTTTGCAACTTGGGACATCATTTATTTTGACCAGCAAGTGATATTATCATTCAGAATTATGACTTATGAGGATCTTTCGTGCTTGGTAGATGATGTGCTGTTCCTCGAGTCTTGGTCCTTGTTGCTTATGTTCATGTGTACGCCCCAAGAAATTAAATTTCCATTGACATGTCAATATTTTCTCTGTTTATAAATCAAATTGTTTGACAATCATC ATGAGCCGACCAATGGAGGAAGATGCTAGCAAGAATGAGGAAGAGGAATTCAACACGGGTCCGCTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGACCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTCCCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCCAAGTAA MSRPMEEDASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK Homology
BLAST of Lcy11g008700 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.8e-45 Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 0
BLAST of Lcy11g008700 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.8e-45 Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 0
BLAST of Lcy11g008700 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 1.8e-45 Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 0
BLAST of Lcy11g008700 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.1e-45 Identity = 86/100 (86.00%), Postives = 95/100 (95.00%), Query Frame = 0
BLAST of Lcy11g008700 vs. ExPASy Swiss-Prot
Match: Q18786 (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239 GN=snr-4 PE=1 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 2.7e-41 Identity = 81/100 (81.00%), Postives = 91/100 (91.00%), Query Frame = 0
BLAST of Lcy11g008700 vs. ExPASy TrEMBL
Match: A0A1S3BTT5 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE=3 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 1.6e-52 Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Lcy11g008700 vs. ExPASy TrEMBL
Match: A0A5A7TNA0 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004930 PE=3 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 1.6e-52 Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Lcy11g008700 vs. ExPASy TrEMBL
Match: A0A6J1J3W3 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC111483160 PE=3 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 1.6e-52 Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Lcy11g008700 vs. ExPASy TrEMBL
Match: A0A0A0KUK4 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis sativus OX=3659 GN=Csa_4G046730 PE=3 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 1.6e-52 Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Lcy11g008700 vs. ExPASy TrEMBL
Match: A0A6J1EM19 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita moschata OX=3662 GN=LOC111435853 PE=3 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 1.6e-52 Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Lcy11g008700 vs. NCBI nr
Match: XP_004146504.1 (small nuclear ribonucleoprotein Sm D2 [Cucumis sativus] >XP_008452073.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452074.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452075.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_022929177.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_022985082.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima] >XP_023551877.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo] >KAE8649185.1 hypothetical protein Csa_014590 [Cucumis sativus]) HSP 1 Score: 214.9 bits (546), Expect = 3.3e-52 Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Lcy11g008700 vs. NCBI nr
Match: KAA0044802.1 (small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa] >TYK16662.1 small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa]) HSP 1 Score: 214.9 bits (546), Expect = 3.3e-52 Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Lcy11g008700 vs. NCBI nr
Match: KAG6577216.1 (U-box domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 214.9 bits (546), Expect = 3.3e-52 Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Lcy11g008700 vs. NCBI nr
Match: XP_038876979.1 (small nuclear ribonucleoprotein Sm D2-like [Benincasa hispida]) HSP 1 Score: 214.9 bits (546), Expect = 3.3e-52 Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Lcy11g008700 vs. NCBI nr
Match: XP_022983472.1 (small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima]) HSP 1 Score: 213.8 bits (543), Expect = 7.4e-52 Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0
BLAST of Lcy11g008700 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 200.7 bits (509), Expect = 6.0e-52 Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 0
BLAST of Lcy11g008700 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 200.7 bits (509), Expect = 6.0e-52 Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 0
BLAST of Lcy11g008700 vs. TAIR 10
Match: AT3G62840.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 200.7 bits (509), Expect = 6.0e-52 Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 0
BLAST of Lcy11g008700 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 200.3 bits (508), Expect = 7.9e-52 Identity = 100/109 (91.74%), Postives = 104/109 (95.41%), Query Frame = 0
BLAST of Lcy11g008700 vs. TAIR 10
Match: AT2G47640.4 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 200.3 bits (508), Expect = 7.9e-52 Identity = 100/109 (91.74%), Postives = 104/109 (95.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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