Lcy11g007220 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g007220
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr11: 7413141 .. 7414622 (+)
RNA-Seq ExpressionLcy11g007220
SyntenyLcy11g007220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGATTCGCACTGGAAGATTTTGTTGGGAAGAAGCATACACATGAGGTCACTGTAGCAACGATCACTGAGTGCCGGTGGACCCCCACCATTTCAGCGTATCACAGCCGTTGGATCGTCACGGCTTCTCAGTCGGCGATAGCCACGTGTCTTCATCATCTTCGATTCTGGTTGCTATAAATTACCCTGAACCGGCTCAGGTTCTTCTTGCCCTGCATAGGGTTTAATCTCAATCTCCGTTCTTTCTCTCTGCTTACCTCACCTTACCGTCGCTTCACTCGTCCGCCGCGGCGGCGAGAACCTTCGCCGGAAACTCTCGGCGTTGTTTCTTCTCAGTTACAACACCGACGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGCTTCGCTCCGCCTACGGTTAGCGTTTGCCGACGGCCGGCATTTCTTCATCTTCTTTTTCTGTTCTTCTCTGCTTCTAGTTTTTTGCTTTTTGCTTGATTTCTTTGCCGCCGTGTGGTGTTATCTTGTTCGGAAAATGTTTGGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAAACCGTGGTGAAGATTGCTTGGATTCTTACCTTCCTCCAGATCTCAGGTACGGAATTGCTCTTACTTTCGAGAGAGAGTGAGTTAATCTAATTGTTCGCATTTTTCATGATCGGAGTTGTAGATTTTCGTTGCTAGTTTCGATTTCTCTCCATGACTGAAATCAATCAATCTTAACATTGCTTAATGGATCTGGTCTGTGATTCTGAATCTTATTTAGTTATCGTTCTCACTCTGTCGTCTTTCGCTTACTGAGTTGAGGATTGAGAAGCTTAAGCTGTGATTCTCAATTGAGGTTCAAGTTTTTGTGTATCATAAAGTCAGATTTATAGTCGTTGAAGTTACTTGGTTTCTGTTAAGTTGCTTACATCCATGGAACACAATGACAGATTCTACCTCTGATTTTGACATAAAACTACGATTCTAATCCGAATGGAATAACTGAACTGTTAGAATTTAGCTTCTAATTCATGCTCTGCTTCTGGTAAAAAAGTGTAACAAAAAAAAAAAAAAAAAAAAAAACAGGATGATATCATCTTTTAACTGCTGTTTAGCTTAGCTTGTAATTAGTGTTTGGTTCAATTAATTGATCTGTTTGCTGAGTAGATTTTCTGGAAAGGAAGAACATGAAAAAGGAAAGAGAGAGAGAGGAAGTAGCGAACTGTTTGTAAGTTGCATTCTTCTGGTAATTCTCACCTATGACTGTTGAATTCCCCGCAAAACCAGGTTTCCTGAAATTTTGTGCCCTTCGTTTCTATTGCATGATGAGCAGAGTAGAACTAAGAATTATGGAAATTGTATTCCGGAAAAGGGGGAATTTGTTTCCATTTGTTGAATCGTGGGCCGTCTGGTTCCATCATTCCATGATAATAGCCTATGGAAATGGAGACAATCCGATTCCTTGTGTTCGGAAAATATAA

mRNA sequence

ATGAAGAGATTCGCACTGGAAGATTTTGTTGGGAAGAAGCATACACATGAGGTCACTGTAGCAACGATCACTGAGTGCCGGTGGACCCCCACCATTTCAGCGTATCACAGCCGTTGGATCGTCACGGCTTCTCAGTCGGCGATAGCCACGTGTCTTCATCATCTTCGATTCTGGTCGGGAACTGCTTCGCTCCGCCTACGGTTAGCGTTTGCCGACGGCCGGCATTTCTTCATCTTCTTTTTCTGTTCTTCTCTGCTTCTAGTTTTTTGCTTTTTGCTTGATTTCTTTGCCGCCGTGTGGTGTTATCTTGTTCGGAAAATGTTTGGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAAACCGTGGTGAAGATTGCTTGGATTCTTACCTTCCTCCAGATCTCAGGTTTCCTGAAATTTTGTGCCCTTCGTTTCTATTGCATGATGAGCAGAGTAGAACTAAGAATTATGGAAATTGTATTCCGGAAAAGGGGGAATTTGTTTCCATTTGTTGAATCGTGGGCCGTCTGGTTCCATCATTCCATGATAATAGCCTATGGAAATGGAGACAATCCGATTCCTTGTGTTCGGAAAATATAA

Coding sequence (CDS)

ATGAAGAGATTCGCACTGGAAGATTTTGTTGGGAAGAAGCATACACATGAGGTCACTGTAGCAACGATCACTGAGTGCCGGTGGACCCCCACCATTTCAGCGTATCACAGCCGTTGGATCGTCACGGCTTCTCAGTCGGCGATAGCCACGTGTCTTCATCATCTTCGATTCTGGTCGGGAACTGCTTCGCTCCGCCTACGGTTAGCGTTTGCCGACGGCCGGCATTTCTTCATCTTCTTTTTCTGTTCTTCTCTGCTTCTAGTTTTTTGCTTTTTGCTTGATTTCTTTGCCGCCGTGTGGTGTTATCTTGTTCGGAAAATGTTTGGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAAACCGTGGTGAAGATTGCTTGGATTCTTACCTTCCTCCAGATCTCAGGTTTCCTGAAATTTTGTGCCCTTCGTTTCTATTGCATGATGAGCAGAGTAGAACTAAGAATTATGGAAATTGTATTCCGGAAAAGGGGGAATTTGTTTCCATTTGTTGAATCGTGGGCCGTCTGGTTCCATCATTCCATGATAATAGCCTATGGAAATGGAGACAATCCGATTCCTTGTGTTCGGAAAATATAA

Protein sequence

MKRFALEDFVGKKHTHEVTVATITECRWTPTISAYHSRWIVTASQSAIATCLHHLRFWSGTASLRLRLAFADGRHFFIFFFCSSLLLVFCFLLDFFAAVWCYLVRKMFGRIGSRLASTESETVVKIAWILTFLQISGFLKFCALRFYCMMSRVELRIMEIVFRKRGNLFPFVESWAVWFHHSMIIAYGNGDNPIPCVRKI
Homology
[Close]
BLAST of Lcy11g007220 vs. ExPASy TrEMBL
Match: A0A0A0KV90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056540 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.5e-08
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 0 

Query: 77  FIFFFCSSLLLVFCFLLDFFAAVWCYLVRKMFGRIGSRLASTESETVVKIAWILTFLQIS 136
           F+FF        F FLL+FFAAV CY+V KM GRIGSRLASTESETVVKIA +L FLQIS
Sbjct: 57  FLFF------SAFVFLLNFFAAVRCYVVGKMCGRIGSRLASTESETVVKIASVLAFLQIS 110

[Close]
BLAST of Lcy11g007220 vs. NCBI nr
Match: KAG6600427.1 (hypothetical protein SDJN03_05660, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 5.9e-18
Identity = 55/80 (68.75%), Postives = 59/80 (73.75%), Query Frame = 0 

Query: 107 MFGRIGSRLASTESETVVKIAWILTFLQISGFLKFCALRFYCMMSRVELRIMEIVFRKRG 166
           MFGRIGSRLASTESETVVKIAWILTFLQIS               +   RIM++VFRKRG
Sbjct: 1   MFGRIGSRLASTESETVVKIAWILTFLQIS--------------VQGRTRIMKLVFRKRG 60

Query: 167 NLFPFVESWAVWFHHSMIIA 187
           +LF FV SWAVW HHSMIIA
Sbjct: 61  DLFSFVGSWAVWLHHSMIIA 66

The following BLAST results are available for this feature:
BLAST of Lcy11g007220 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy11g007220 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV904.5e-0870.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056540 PE=4 SV=1[more]
BLAST of Lcy11g007220 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600427.15.9e-1868.75hypothetical protein SDJN03_05660, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy11g007220 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g007220.1Lcy11g007220.1mRNA