Lcy11g005260 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g005260
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Cytochrome b-c1 complex subunit 6
Location	Chr11: 5127808 .. 5130832 (+)
RNA-Seq Expression	Lcy11g005260
Synteny	Lcy11g005260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGGCCCGAGAAGCTTCTAATGAACCGGAAAGCGGAAGAGATTTGTCATATTGCAATTTCTCAACTTCGAAACTAAACCTAATCAGAGTTGCTATTTTCCTCCCAGATTCGTGTTTCAGCTCCAAGGTATGAATTCGGAGCGGAGAAAGACTCAGCCTGTTTTCAAATTTATATGTTTTTAAGCTTTTGATGATTCTCGTTCCCAGTTTTTCTTTTCTGTTTCGATTTTTATTATCAGATCCGTGTTTAATTTCCCTCGATTTGTCGATCGTCTGTTTTGGCATTTGTGGGTGTGTTCGATTTCTTTTATCAATTGGGTTCGTTTACTCTGAAGTTTTCTAAGAGATCGATGGAGGATTTTTGTTTTTGTTTTTGTTTATTTTTTGTGTGTATTTATACTATGTCGTTAGTTCCATCTCTCAGTAGTTGGTATTTGAGGGGACAATATTTGTGTTTGATTGTATGATCTGAGTCCTCAAATTATGAAATGGAGTTTTCCGTTTTTCTTAACGTGGAATCGAGTTTTGCGAGTACCATTACGTATCTCTTACAGGCAGTTTGATTTGTGGGTACGAGTCATTGGATTGAAATCGATTGCTTTTCCTTTGGTGAAAATGATGGCGATTCTCTGATAGTTACCTTTGTTTCTGTATGTTAAATATCTGAACCTAAAATCTAATCTTACGTAGCCAATGATACTCTTAAAAAGCTCAGAGTTGAGCCCGAGGGTCGGTCAATTTCAGTACTTAAAATATATCTTGCTTCTGCCATTCTGCCATTCTTCAAAACAATGCTCGAGATTAAGACATAGACATTTTGAATTTGTGGGATAAAGTTCATGGATACAATATTCTTCTTTTTATTTTTTCCGTACTGATTTTTTTTTTAATGAATAATTCCAATATTGATGTTTTTCAGGTTTTCTTGCCCGCTCTTTTGCTTCAAGTCAGTACTATTTACAAGCAATGTGAGTACTTTTTTTTTTTGTTTTTTTCTTTTGGTTTGAGCTTCATAGTGGTAGTAACCCTGTAGTCTAGTGCTGTGTTTTGTTAGCGTTTATTGCCTTCTTATTTGGCATACATAGATTTCCAAGCCACTATTTCTTCCATCAAAAGTAGTTCATAGTGGTAGGAAGAGTTGTTAGGGGGTGGACTGTGGAGACATACCTGGATTAGTGTTTCTCTGAATCTTGATATTTTTAACGACTACGATGACATATATCATCTCCCTGTTGCTGAAATTGAAGCTATGAAAGATAGATGTGCTGTGAATTTTGTACATTTTTGAAAGAACTAGGTTGCTGAAGATTTAGTTTCAATGTAAATCAGATGTGTTAACACTTAGCAGATGTAGCATTTTGTTGGCTTAGTGATATGCTTAATGTTTTAGATATTTGTAAGGTTTAATAATCAGGAGGATAATTACATTATCAAATACAAATGGTTAAAGTATGCCGGTTTAGAAATTGAGATACTTCATATGATTGGAAGCTTTTTGTTAATGCATTTTTCTTCATACTCTGTGTCTTTATCTTTCATAATATTGAAGATTACTTTATTTGATGTTAACTTGTCTTCATTTCCTCGTTTCTTGGTAAAACATAGGGCGGATGAAGAACCTGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAATCACTACTTGAATATCAGGTACAGGGTGCTTATTGGTTTTTTTTTTTATAGGGGCTTATGAGTCTTAGTGAAGTTGGATATGTGTTTTTTTCGATTGTTGGACTTGTATTCATTATTCAACTGCTTTTCATGACTAAACTTTAAAAAGCTGGTTTCGTGAAGAGGCATATTTCTATTCTCTCATTTGATTAGAAATTAACTTCTCACTAGATTGAAGATTTTGCATCTCCCCATGTGAGTGCATCCATTTATAAGTTGTTACATTTCCTTGTTAACTTTGACCCTTCTTTGTGATGCAATGATTAGTATCTAGTGAACTATCTCTTCCAAAGAAAGTCCAACTTGAAGGTAGTGGCATTTGTTAGAAACTTAGAGTTTAAAAGCAGTGAAAGGTGTTGGTATTGTGAGTAGCGATGGGGTTTGGTGGTGGGTGGGTTATATGTATATTCTGGTTGAAAATAATAAAATACACAAGCAGCCACCAATCACTAAGGTTTATAAGCTTGTTTGGAGAATAACCGAGCTTAGTTACAAGAGCAAGATACTTCCTAACAAGACTTGAGCTAGGCCTGTCAAGCTGAATACCAAAGTACCACTCTACAGGGGAGGGAGGGGGATGGGGAGGGGGGGGGGGGGTTGGGGATTGAAAGGAAGTTACAATTTTTTTTAATGGATTCTGAATTTTCTTATGGAAAAACCAATTGACAACACTTGGGCTCCATCAATCAATCAACCCACGCCTTGGAGATAAAAGCAATATTCAAAAATAGCTTTGTGAGAGAATGAAGCCACTCGAATGCTTATTTCATTGGTAATTCCAACAACATATTTCATAATTTGTCTTTCAATTTCTGGTTCCTATCTTAATCTTGCCCTTGATGGTCATAGTAAGTTAGAAAGTTGTTAGCGCAAACCTATTTTATTCTTTTGGGTTGGAGGTCCTTTTCGCTTAGGGAGCTTATGTTTGGACTCCTTTTGTTGGGCTGTTTTTGTATGGTCTTGTATATTCTTTCATTTAGAAGTCCAATTTCTCGTCAGAAAGTGTTAGGACAATCTTGTAGGGAATGCAATTACCCTTGTGCAATTATGGTGAAATATCCTTACTTATGATGCTAATCATTTAGGTTATGGCCCTTCTCAAAAAATTGACTAGAGTTGTGAATTCAACTCAATTTTCCGGACAAAACTGAAGATATCTTTTCTCCAAAATTTGAGACATCTCATGGTTCACTGATTCTAGTTGATATCATGCATTGGGGTTCATGTTGACTCAGTCACTAGTCGTCCTGTTGTTGTGATAGCGATGAATCTAAAAAATGCATTGGACTTCTTTCCCCGTGGATACTAG

mRNA sequence

ATGGATCCGGCCCGAGAAGCTTCTAATGAACCGGAAAGCGGAAGAGATTTGTCATATTGCAATTTCTCAACTTCGAAACTAAACCTAATCAGAGTTGCTATTTTCCTCCCAGATTCGTGTTTCAGCTCCAAGATTACTTTATTTGATGTTAACTTGTCTTCATTTCCTCGTTTCTTGGTAAAACATAGGGCGGATGAAGAACCTGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAATCACTACTTGAATATCAGTTGATATCATGCATTGGGGTTCATGTTGACTCAGTCACTAGTCGTCCTGTTGTTGTGATAGCGATGAATCTAAAAAATGCATTGGACTTCTTTCCCCGTGGATACTAG

Coding sequence (CDS)

ATGGATCCGGCCCGAGAAGCTTCTAATGAACCGGAAAGCGGAAGAGATTTGTCATATTGCAATTTCTCAACTTCGAAACTAAACCTAATCAGAGTTGCTATTTTCCTCCCAGATTCGTGTTTCAGCTCCAAGATTACTTTATTTGATGTTAACTTGTCTTCATTTCCTCGTTTCTTGGTAAAACATAGGGCGGATGAAGAACCTGTTGATCAGAAGAGGTATCTTGAAGAAGCTTGCAAGCCCAAGTGTGTGAAATCACTACTTGAATATCAGTTGATATCATGCATTGGGGTTCATGTTGACTCAGTCACTAGTCGTCCTGTTGTTGTGATAGCGATGAATCTAAAAAATGCATTGGACTTCTTTCCCCGTGGATACTAG

Protein sequence

MDPAREASNEPESGRDLSYCNFSTSKLNLIRVAIFLPDSCFSSKITLFDVNLSSFPRFLVKHRADEEPVDQKRYLEEACKPKCVKSLLEYQLISCIGVHVDSVTSRPVVVIAMNLKNALDFFPRGY

Homology

[Close]

BLAST of Lcy11g005260 vs. ExPASy Swiss-Prot
Match: Q0WWE3 (Cytochrome b-c1 complex subunit 6-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR6-1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.8e-06
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 64 ADEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          AD+E VD K+YLEE+CKPKCVK LLEYQ
Sbjct: 2  ADDEVVDPKKYLEESCKPKCVKPLLEYQ 29

[Close]

BLAST of Lcy11g005260 vs. ExPASy Swiss-Prot
Match: Q9SJV7 (Cytochrome b-c1 complex subunit 6-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR6-2 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 65 DEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          +E+ VDQKRY EE+CKPKCVK LLEYQ
Sbjct: 3  EEDVVDQKRYFEESCKPKCVKPLLEYQ 29

[Close]

BLAST of Lcy11g005260 vs. ExPASy TrEMBL
Match: A0A540MGU5 (Cytochrome b-c1 complex subunit 6 OS=Malus baccata OX=106549 GN=C1H46_016793 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.9e-08
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 45 ITLFDVNLSSFPRFLVKHRADEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          +T++ + L S+ R L + RADEEPVDQK YLEE CKPKCVK LLEYQ
Sbjct: 1  MTVYGMGLRSWARILCQPRADEEPVDQKNYLEELCKPKCVKPLLEYQ 47

[Close]

BLAST of Lcy11g005260 vs. ExPASy TrEMBL
Match: A0A498HS84 (Cytochrome b-c1 complex subunit 6 OS=Malus domestica OX=3750 GN=DVH24_016461 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 50 VNLSSFPRFLVKHRADEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          + L S+ R L + RADEEPVDQK YLEE CKPKCVK LLEYQ
Sbjct: 1  MGLRSWARILCQPRADEEPVDQKNYLEELCKPKCVKPLLEYQ 42

[Close]

BLAST of Lcy11g005260 vs. ExPASy TrEMBL
Match: A0A2K3P765 (Cytochrome b-c1 complex subunit 6-like protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g007726 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.2e-07
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 56  PRFLVKHRADEEPVDQKRYLEEACKPKCVKSLLEYQLISCIG 98
           P+   K +ADEEPVDQKR+LEE+CKPKCV+ L+EYQ +S +G
Sbjct: 62  PKLFTKLKADEEPVDQKRFLEESCKPKCVRPLIEYQGVSELG 103

[Close]

BLAST of Lcy11g005260 vs. ExPASy TrEMBL
Match: A0A445BAC3 (UCR_hinge domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g050758 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 59 LVKHRADEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          L  +RADEEPVDQKRYLEE+CKPKCVK+LLEYQ
Sbjct: 18 LEMNRADEEPVDQKRYLEESCKPKCVKALLEYQ 50

[Close]

BLAST of Lcy11g005260 vs. ExPASy TrEMBL
Match: A0A6P5MYC4 (cytochrome b-c1 complex subunit 6 isoform X1 OS=Arachis duranensis OX=130453 GN=LOC107468699 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 59 LVKHRADEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          L  +RADEEPVDQKRYLEE+CKPKCVK+LLEYQ
Sbjct: 18 LEMNRADEEPVDQKRYLEESCKPKCVKALLEYQ 50

[Close]

BLAST of Lcy11g005260 vs. NCBI nr
Match: KAG7030998.1 (hypothetical protein SDJN02_05037 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 59/96 (61.46%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 1  MDPAREASNEPESGRDLSYCNFSTSKLNLIRVAIFLPDSCFSSKITLFDVNLSSFPRF-L 60
          MDPARE  N       LS CNFSTSKLNL RV   L  SCFSSK      N   F  +  
Sbjct: 1  MDPAREQRNRKVEA--LSNCNFSTSKLNLNRVTDSLRGSCFSSK------NGIKFNEYHY 60

Query: 61 VKHR----ADEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          + HR    ADEEPVDQKRYLEEACKPKCVK LLEYQ
Sbjct: 61 LPHRQFNLADEEPVDQKRYLEEACKPKCVKPLLEYQ 88

[Close]

BLAST of Lcy11g005260 vs. NCBI nr
Match: TQD97619.1 (hypothetical protein C1H46_016793 [Malus baccata])

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 45 ITLFDVNLSSFPRFLVKHRADEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          +T++ + L S+ R L + RADEEPVDQK YLEE CKPKCVK LLEYQ
Sbjct: 1  MTVYGMGLRSWARILCQPRADEEPVDQKNYLEELCKPKCVKPLLEYQ 47

[Close]

BLAST of Lcy11g005260 vs. NCBI nr
Match: KAG5016042.1 (hypothetical protein JHK85_022178 [Glycine max])

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-07
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 52 LSSFPRFLVKHRADEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          ++  P  L KH ADEEPVDQKRYLEE+CKPKCVK LLEYQ
Sbjct: 1  MAGSPFLLEKHTADEEPVDQKRYLEESCKPKCVKPLLEYQ 40

[Close]

BLAST of Lcy11g005260 vs. NCBI nr
Match: RXH73639.1 (hypothetical protein DVH24_016461 [Malus domestica])

HSP 1 Score: 64.3 bits (155), Expect = 8.5e-07
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 50 VNLSSFPRFLVKHRADEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          + L S+ R L + RADEEPVDQK YLEE CKPKCVK LLEYQ
Sbjct: 1  MGLRSWARILCQPRADEEPVDQKNYLEELCKPKCVKPLLEYQ 42

[Close]

BLAST of Lcy11g005260 vs. NCBI nr
Match: PNY11127.1 (cytochrome b-c1 complex subunit 6-like protein, partial [Trifolium pratense])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-06
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 56  PRFLVKHRADEEPVDQKRYLEEACKPKCVKSLLEYQLISCIG 98
           P+   K +ADEEPVDQKR+LEE+CKPKCV+ L+EYQ +S +G
Sbjct: 62  PKLFTKLKADEEPVDQKRFLEESCKPKCVRPLIEYQGVSELG 103

[Close]

BLAST of Lcy11g005260 vs. TAIR 10
Match: AT1G15120.2 (Ubiquinol-cytochrome C reductase hinge protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 34 IFLPDSCFSSKITLFDVNLSSFPRFLVKHRADEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          + LP  CF    +   +++ SF   L  + AD+E VD K+YLEE+CKPKCVK LLEYQ
Sbjct: 43 VLLP--CFFESRSPLSISVFSFQ--LTFNMADDEVVDPKKYLEESCKPKCVKPLLEYQ 96

[Close]

BLAST of Lcy11g005260 vs. TAIR 10
Match: AT1G15120.1 (Ubiquinol-cytochrome C reductase hinge protein )

HSP 1 Score: 51.2 bits (121), Expect = 7.0e-07
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 64 ADEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          AD+E VD K+YLEE+CKPKCVK LLEYQ
Sbjct: 2  ADDEVVDPKKYLEESCKPKCVKPLLEYQ 29

[Close]

BLAST of Lcy11g005260 vs. TAIR 10
Match: AT2G01090.1 (Ubiquinol-cytochrome C reductase hinge protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 65 DEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          +E+ VDQKRY EE+CKPKCVK LLEYQ
Sbjct: 3  EEDVVDQKRYFEESCKPKCVKPLLEYQ 29

[Close]

BLAST of Lcy11g005260 vs. TAIR 10
Match: AT2G01090.2 (Ubiquinol-cytochrome C reductase hinge protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 65 DEEPVDQKRYLEEACKPKCVKSLLEYQ 92
          +E+ VDQKRY EE+CKPKCVK LLEYQ
Sbjct: 3  EEDVVDQKRYFEESCKPKCVKPLLEYQ 29

The following BLAST results are available for this feature:

BLAST of Lcy11g005260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WWE3	9.8e-06	78.57	Cytochrome b-c1 complex subunit 6-1, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q9SJV7	2.9e-05	77.78	Cytochrome b-c1 complex subunit 6-2, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Lcy11g005260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A540MGU5	4.9e-08	65.96	Cytochrome b-c1 complex subunit 6 OS=Malus baccata OX=106549 GN=C1H46_016793 PE=...	[more]
A0A498HS84	4.1e-07	71.43	Cytochrome b-c1 complex subunit 6 OS=Malus domestica OX=3750 GN=DVH24_016461 PE=...	[more]
A0A2K3P765	9.2e-07	64.29	Cytochrome b-c1 complex subunit 6-like protein (Fragment) OS=Trifolium pratense ...	[more]
A0A445BAC3	1.2e-06	84.85	UCR_hinge domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g05075...	[more]
A0A6P5MYC4	1.2e-06	84.85	cytochrome b-c1 complex subunit 6 isoform X1 OS=Arachis duranensis OX=130453 GN=...	[more]

BLAST of Lcy11g005260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030998.1	1.3e-15	61.46	hypothetical protein SDJN02_05037 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
TQD97619.1	1.0e-07	65.96	hypothetical protein C1H46_016793 [Malus baccata]	[more]
KAG5016042.1	1.7e-07	75.00	hypothetical protein JHK85_022178 [Glycine max]	[more]
RXH73639.1	8.5e-07	71.43	hypothetical protein DVH24_016461 [Malus domestica]	[more]
PNY11127.1	1.9e-06	64.29	cytochrome b-c1 complex subunit 6-like protein, partial [Trifolium pratense]	[more]

BLAST of Lcy11g005260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15120.2	1.1e-07	50.00	Ubiquinol-cytochrome C reductase hinge protein	[more]
AT1G15120.1	7.0e-07	78.57	Ubiquinol-cytochrome C reductase hinge protein	[more]
AT2G01090.1	2.0e-06	77.78	Ubiquinol-cytochrome C reductase hinge protein	[more]
AT2G01090.2	2.0e-06	77.78	Ubiquinol-cytochrome C reductase hinge protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036811	Ubiquinol-cytochrome C reductase hinge domain superfamily	SUPERFAMILY	81531	Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 64..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g005260.1	Lcy11g005260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component	GO:0005750	mitochondrial respiratory chain complex III