Lcy11g004990 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g004990
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description40S ribosomal protein S16
LocationChr11: 4795210 .. 4796588 (+)
RNA-Seq ExpressionLcy11g004990
SyntenyLcy11g004990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTCCGATCGAATCGGTGCAATGTTTCGGACGCAAGAAGACGGCGGTGGCTGTCACCTACTGCAAGCGCGGCAGGGGTTTGATTAAGATCAATGGCTGTCCAATCGAGCTTGTTGAGCCAGAGATCTTGCGCTTCAAGGCGTACGAGCCCATACTCCTCCTTGGCCGCAACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAAGGCGGAGGTCACACCTCGCAGATCTACGCCATCCGCCAGAGTATAGCCAAGGCTCTTGTTGCATTCTACCAGAAGTACGTCGATGAGCAGAGCAAGAAGGAGATTAAAGACATTCTGGTCAGGTATGATAGGACTTTGCTCGTTGCCGATCCTAGGCGCTGTGAGCCCAAGAAGTTTGGTGGTCGTGGTGCTCGTGCTAGGTTTCAGAAGTCATACCGTTGATCGAAGAGTACTTGGGAACTATGATGGAGAGGGGTTAGTCGGTAATGATAATTTGTTTTTGGTTTTGAGTTCACATAGCTTTGAAGACTTAAGATTATGGTTCAGTTTATGCTCTAGTATAAGTATTTGGATTTGTAAGACTTGAGTTTCCGTTGATATTACGATAATTGCAATCAAAATGCTTTTTGAAACATCGGAATTTATCTGCCAATTATCTCTGTTTGTGTTCGAGTATAAATGGACCATAGTCATTGATAAGTGATAGTTTATATGCGGATGGATTTTTGTTGAAGATGATCATCTACCATTGAACATCTTGTTATTTGGTAGAAATAGTTGTTAAGACTTGAGAATGCCTCGAGAGATTGTGATTTGGGATTAGTCCATTCTACTTCTGCCGACTTTCTGATAAGTCATTAGTTTTTCTCTTCATTAGTTACTTGATTTCCATTTGTTTTCAACGATCGAGTGTCTGCCAATATTTCATGAATTATAGATGCATTGGCCTTTGCTGTGGCTGAAAATTGAAATTTTGGTGCTAATGGGTCTGCCTAACTCTGTGAACTCTGGTGCCCCAAGTGGCTGTTTTTTAGATATAAAGTTTGTTTCATTATTGATTACGTGTTGATTTTATCTACCATGAGGAATGGTTTTGACTTGGACAAGTTTGGGATGCAGTGTGCCATTGTTTCTTGGTTAAAACTTAAAACACCATCATAGATATTCGAATGATGATTTCAAATGCCTGATTGATGGTAAGCATTGGAAGGGTGTTTTGACTTTGAGTTTTAAAAGCTTAAACTTGTATTTGGTATCTTCTTAGGCTACATAAATTTAGGCTGAAACACACATTTTGTACAAGTAGTTTTCACAAATCATTAATTTTCAAAACAGAATTTGTTTATAACTCATTCTTTTATTCAAACACAGATTACATCAGCTAG

mRNA sequence

ATGGCGGCTCCGATCGAATCGGTGCAATGTTTCGGACGCAAGAAGACGGCGGTGGCTGTCACCTACTGCAAGCGCGGCAGGGGTTTGATTAAGATCAATGGCTGTCCAATCGAGCTTGTTGAGCCAGAGATCTTGCGCTTCAAGGCGTACGAGCCCATACTCCTCCTTGGCCGCAACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAAGGCGGAGGTCACACCTCGCAGATCTACGCCATCCGCCAGAGTATAGCCAAGGCTCTTGTTGCATTCTACCAGAAGTACGTCGATGAGCAGAGCAAGAAGGAGATTAAAGACATTCTGGTCAGATATTCGAATGATGATTTCAAATGCCTGATTGATGATTACATCAGCTAG

Coding sequence (CDS)

ATGGCGGCTCCGATCGAATCGGTGCAATGTTTCGGACGCAAGAAGACGGCGGTGGCTGTCACCTACTGCAAGCGCGGCAGGGGTTTGATTAAGATCAATGGCTGTCCAATCGAGCTTGTTGAGCCAGAGATCTTGCGCTTCAAGGCGTACGAGCCCATACTCCTCCTTGGCCGCAACCGTTTCTCTGGTGTCGATATGCGCATCAGAGTGAAAGGCGGAGGTCACACCTCGCAGATCTACGCCATCCGCCAGAGTATAGCCAAGGCTCTTGTTGCATTCTACCAGAAGTACGTCGATGAGCAGAGCAAGAAGGAGATTAAAGACATTCTGGTCAGATATTCGAATGATGATTTCAAATGCCTGATTGATGATTACATCAGCTAG

Protein sequence

MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYSNDDFKCLIDDYIS
Homology
[Close]
BLAST of Lcy11g004990 vs. ExPASy Swiss-Prot
Match: P46293 (40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.8e-53
Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 0 

Query: 5   IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNRFSGV 64
           IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+GV
Sbjct: 6   IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGV 65

Query: 65  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV Y
Sbjct: 66  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGY 114

[Close]
BLAST of Lcy11g004990 vs. ExPASy Swiss-Prot
Match: Q9SK22 (40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.5e-49
Identity = 94/108 (87.04%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG++RF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRY
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRY 115

[Close]
BLAST of Lcy11g004990 vs. ExPASy Swiss-Prot
Match: Q42340 (40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.9e-49
Identity = 93/108 (86.11%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG++RF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRY
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRY 115

[Close]
BLAST of Lcy11g004990 vs. ExPASy Swiss-Prot
Match: O22647 (40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.5e-49
Identity = 97/114 (85.09%), Postives = 108/114 (94.74%), Query Frame = 0 

Query: 1   MAAP-IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRN 60
           MA P  ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGR+
Sbjct: 1   MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           RF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RY
Sbjct: 61  RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRY 114

[Close]
BLAST of Lcy11g004990 vs. ExPASy Swiss-Prot
Match: Q9XEK7 (40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.8e-47
Identity = 92/111 (82.88%), Postives = 107/111 (96.40%), Query Frame = 0 

Query: 3   APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNRFS 62
           A +ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR++F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RY
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRY 111

[Close]
BLAST of Lcy11g004990 vs. ExPASy TrEMBL
Match: A0A6J1J781 (40S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGR+R
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 113

[Close]
BLAST of Lcy11g004990 vs. ExPASy TrEMBL
Match: A0A0A0L6F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGR+R
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 113

[Close]
BLAST of Lcy11g004990 vs. ExPASy TrEMBL
Match: A0A1S3C210 (40S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGR+R
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 113

[Close]
BLAST of Lcy11g004990 vs. ExPASy TrEMBL
Match: A0A6J1D637 (40S ribosomal protein S16 OS=Momordica charantia OX=3673 GN=LOC111017623 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGR+R
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 113

[Close]
BLAST of Lcy11g004990 vs. ExPASy TrEMBL
Match: A0A6J1FW85 (40S ribosomal protein S16-like OS=Cucurbita moschata OX=3662 GN=LOC111447898 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGR+R
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 113

[Close]
BLAST of Lcy11g004990 vs. NCBI nr
Match: KAE8645860.1 (hypothetical protein Csa_017052 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 2.9e-55
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGR+R
Sbjct: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY
Sbjct: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 162

[Close]
BLAST of Lcy11g004990 vs. NCBI nr
Match: XP_004136973.1 (40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protein S16 [Cucumis sativus] >XP_004149967.1 40S ribosomal protein S16 [Cucumis sativus] >XP_008454961.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456099.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456141.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_022136342.1 40S ribosomal protein S16 [Momordica charantia] >XP_022149129.1 40S ribosomal protein S16 [Momordica charantia] >XP_022927908.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943042.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943043.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022952362.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022972375.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_022983243.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_023535994.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_023553863.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_038877987.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038880326.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038886975.1 40S ribosomal protein S16 [Benincasa hispida] >KAA0031306.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAG6571970.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011649.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAA0037136.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAA0039084.1 40S ribosomal protein S16 [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 2.9e-55
Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGR+R
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 113

[Close]
BLAST of Lcy11g004990 vs. NCBI nr
Match: XP_022149351.1 (40S ribosomal protein S16-like [Momordica charantia])

HSP 1 Score: 224.9 bits (572), Expect = 3.8e-55
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGR+R
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 113

[Close]
BLAST of Lcy11g004990 vs. NCBI nr
Match: XP_022989000.1 (40S ribosomal protein S16-like [Cucurbita maxima])

HSP 1 Score: 224.2 bits (570), Expect = 6.5e-55
Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNR 60
           MA+PIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGR+R
Sbjct: 1   MASPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 113

[Close]
BLAST of Lcy11g004990 vs. NCBI nr
Match: XP_040987369.1 (40S ribosomal protein S16 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 223.8 bits (569), Expect = 8.5e-55
Identity = 110/113 (97.35%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNR 60
           MAAP+ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGR+R
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 113

[Close]
BLAST of Lcy11g004990 vs. TAIR 10
Match: AT2G09990.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.0e-50
Identity = 94/108 (87.04%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG++RF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRY
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRY 115

[Close]
BLAST of Lcy11g004990 vs. TAIR 10
Match: AT5G18380.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-50
Identity = 93/108 (86.11%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG++RF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRY
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRY 115

[Close]
BLAST of Lcy11g004990 vs. TAIR 10
Match: AT5G18380.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-50
Identity = 93/108 (86.11%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG++RF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRY
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRY 115

[Close]
BLAST of Lcy11g004990 vs. TAIR 10
Match: AT5G18380.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 194.9 bits (494), Expect = 3.9e-50
Identity = 92/108 (85.19%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG++RF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVR+
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRF 115

[Close]
BLAST of Lcy11g004990 vs. TAIR 10
Match: AT3G04230.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-47
Identity = 88/108 (81.48%), Postives = 101/108 (93.52%), Query Frame = 0 

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRNRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG++RF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RY
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRY 115

The following BLAST results are available for this feature:
BLAST of Lcy11g004990 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P462934.8e-5395.4140S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1[more]
Q9SK221.5e-4987.0440S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1[more]
Q423401.9e-4986.1140S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1[more]
O226472.5e-4985.0940S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1[more]
Q9XEK71.8e-4782.8840S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1[more]
BLAST of Lcy11g004990 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J7811.4e-5599.1240S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 ... [more]
A0A0A0L6F61.4e-5599.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1[more]
A0A1S3C2101.4e-5599.1240S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1[more]
A0A6J1D6371.4e-5599.1240S ribosomal protein S16 OS=Momordica charantia OX=3673 GN=LOC111017623 PE=3 SV... [more]
A0A6J1FW851.4e-5599.1240S ribosomal protein S16-like OS=Cucurbita moschata OX=3662 GN=LOC111447898 PE=... [more]
BLAST of Lcy11g004990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8645860.12.9e-5599.12hypothetical protein Csa_017052 [Cucumis sativus][more]
XP_004136973.12.9e-5599.1240S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protei... [more]
XP_022149351.13.8e-5598.2340S ribosomal protein S16-like [Momordica charantia][more]
XP_022989000.16.5e-5598.2340S ribosomal protein S16-like [Cucurbita maxima][more]
XP_040987369.18.5e-5597.3540S ribosomal protein S16 [Juglans microcarpa x Juglans regia][more]
BLAST of Lcy11g004990 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G09990.11.0e-5087.04Ribosomal protein S5 domain 2-like superfamily protein [more]
AT5G18380.11.4e-5086.11Ribosomal protein S5 domain 2-like superfamily protein [more]
AT5G18380.21.4e-5086.11Ribosomal protein S5 domain 2-like superfamily protein [more]
AT5G18380.33.9e-5085.19Ribosomal protein S5 domain 2-like superfamily protein [more]
AT3G04230.11.1e-4781.48Ribosomal protein S5 domain 2-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 12..108
e-value: 3.0E-19
score: 69.7
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 3..114
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 2..125
e-value: 1.1E-38
score: 134.7
NoneNo IPR availablePANTHERPTHR21569:SF28SUBFAMILY NOT NAMEDcoord: 3..114
IPR020574Ribosomal protein S9, conserved sitePROSITEPS00360RIBOSOMAL_S9coord: 72..90
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 7..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g004990.1Lcy11g004990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009809 lignin biosynthetic process
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0032259 methylation
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0042409 caffeoyl-CoA O-methyltransferase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome