Lcy11g004490 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g004490
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 4401802 .. 4402489 (+)
RNA-Seq Expression	Lcy11g004490
Synteny	Lcy11g004490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATTGGAGTAAGGAAAGAGGAGAGGGAAACACTTGAGAAAAATGGAGAGCAAGAAGAATATTGGTTTTGCAGCGATGATGATGGTGATGATGGTTATGATCGCTACCGTCGCCGACTCCGCCTCTGCTACCGAGAATATGGTGGTCGAACTCGTCACCGACCGCCGTGGCGCCAATGCTTTCCCAAGAAAGATGCTGAAAAATGGAGGAAATGGAGTGTGTCCCATAAAAGGTTGGCCATGTAGTCCTGCGTATGGTTGCGGCCCTTTCTCCGACAGCTGTGCTTGCTACACTGCCGGCTTTTGTGGAGATTTTGTTGTCTAAAATTACTATGTTTATTGTATTTGTCTCTCTCCTTTCTACTTCTTTTGCAAAAATAAATCTCTTTCTCTCGAGCTATCTCTCTCTCTCTCTCTTGCGAGATTGATGATCGATTTATGTAACAAAGCTTGATGTTGGTGCATACATGGGAGGAAGTTATGTTTATCATTGTCTCTTTCTTCATATTGCTTTCTATTAACAGTATATGAAAACATAAAATTAGTCATAAACTATGTAATTTTACTTAAACTATGATATCAAACTATGTTTCTGATTACTATGATATCAAGTATCTGATTACTTAAACTATGTAATTAAGTATTTACATCTTGTGAGTACTGATTTAACATGATATCAAAACCAAAG

mRNA sequence

AGAATTGGAGTAAGGAAAGAGGAGAGGGAAACACTTGAGAAAAATGGAGAGCAAGAAGAATATTGGTTTTGCAGCGATGATGATGGTGATGATGGTTATGATCGCTACCGTCGCCGACTCCGCCTCTGCTACCGAGAATATGGTGGTCGAACTCGTCACCGACCGCCGTGGCGCCAATGCTTTCCCAAGAAAGATGCTGAAAAATGGAGGAAATGGAGTGTGTCCCATAAAAGGTTGGCCATGTAGTCCTGCGTATGGTTGCGGCCCTTTCTCCGACAGCTGTGCTTGCTACACTGCCGGCTTTTGTGGAGATTTTGTTGTCTAAAATTACTATGTTTATTGTATTTGTCTCTCTCCTTTCTACTTCTTTTGCAAAAATAAATCTCTTTCTCTCGAGCTATCTCTCTCTCTCTCTCTTGCGAGATTGATGATCGATTTATGTAACAAAGCTTGATGTTGGTGCATACATGGGAGGAAGTTATGTTTATCATTGTCTCTTTCTTCATATTGCTTTCTATTAACAGTATATGAAAACATAAAATTAGTCATAAACTATGTAATTTTACTTAAACTATGATATCAAACTATGTTTCTGATTACTATGATATCAAGTATCTGATTACTTAAACTATGTAATTAAGTATTTACATCTTGTGAGTACTGATTTAACATGATATCAAAACCAAAG

Coding sequence (CDS)

ATGGAGAGCAAGAAGAATATTGGTTTTGCAGCGATGATGATGGTGATGATGGTTATGATCGCTACCGTCGCCGACTCCGCCTCTGCTACCGAGAATATGGTGGTCGAACTCGTCACCGACCGCCGTGGCGCCAATGCTTTCCCAAGAAAGATGCTGAAAAATGGAGGAAATGGAGTGTGTCCCATAAAAGGTTGGCCATGTAGTCCTGCGTATGGTTGCGGCCCTTTCTCCGACAGCTGTGCTTGCTACACTGCCGGCTTTTGTGGAGATTTTGTTGTCTAA

Protein sequence

MESKKNIGFAAMMMVMMVMIATVADSASATENMVVELVTDRRGANAFPRKMLKNGGNGVCPIKGWPCSPAYGCGPFSDSCACYTAGFCGDFVV

Homology

[Close]

BLAST of Lcy11g004490 vs. ExPASy TrEMBL
Match: A0A5D3E0N0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00620 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 5  KNIGFAAMMMVMMVMIATVADSASATENMVVELVTDRRGANAFPRKMLKNG-GNGVCPIK 64
          +NIG AA MMVMM++IATV +SAS TE M ++LVTD   A +FPRKM++NG GNGVCPI 
Sbjct: 6  RNIGAAATMMVMMLLIATVVESASPTEKM-IKLVTDHHAAGSFPRKMMRNGKGNGVCPIT 65

Query: 65 GWPCSPAYGCGPFSDSCACYTAGFCGDFV 93
          GWPC+PAYGCGPFSDSCACYTAG CGDFV
Sbjct: 66 GWPCNPAYGCGPFSDSCACYTAGHCGDFV 93

[Close]

BLAST of Lcy11g004490 vs. ExPASy TrEMBL
Match: A0A5D3E254 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00610 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.2e-25
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 5  KNIGFAAMMMVMMVMIATVADS-ASATENMVVELVTDRRGANAFPRKMLKNG-GNGVCPI 64
          KN+G  A MMVMM++IATV +S AS TE  ++ELVTD   A++FPRKM++NG GNGVCPI
Sbjct: 3  KNMGAEATMMVMMLLIATVVESAASPTEKAMIELVTDHHAASSFPRKMMRNGKGNGVCPI 62

Query: 65 KGWPCSPAYGCGPFSDSCACYTAGFCGDFV 93
          +GWPC PA+GCGP S  CACYT+G+CGD+V
Sbjct: 63 RGWPCIPAFGCGPLSGVCACYTSGYCGDYV 92

[Close]

BLAST of Lcy11g004490 vs. ExPASy TrEMBL
Match: A0A0A0KWE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000820 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.0e-23
Identity = 63/92 (68.48%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 5  KNIGFA-AMMMVMMVMIATVADSASATENM-VVELVTDRRGANAFPRKMLKNG-GNGVCP 64
          KNIG A A MMVMM++IATV +SAS TE + ++ELVT+   A++FPRKM++NG GNGVCP
Sbjct: 6  KNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKGNGVCP 65

Query: 65 IKGWPCSPAY-GCGPFSDSCACYTAGFCGDFV 93
          I G PC+P Y GCGPFSD+CACYTAG CGDFV
Sbjct: 66 IIGRPCNPEYGGCGPFSDTCACYTAGHCGDFV 97

[Close]

BLAST of Lcy11g004490 vs. ExPASy TrEMBL
Match: A0A0A0KT53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000830 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.0e-10
Identity = 51/98 (52.04%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1  MES-KKNIGFAAMMMVMMV--MIATVADSAS-ATENMVVELVTDRRGANAFPRK-MLKNG 60
          MES KK+I   A ++V+MV  MIAT+ADSA+ ATEN+   ++ D  G++AFPRK ++KNG
Sbjct: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVD-GGSHAFPRKNVVKNG 60

Query: 61 GNGVCPIKGWPCSPAYGCGPFSDSCACYTAGFCGDFVV 94
           NGVC +KG  C     C      CACYTAG CGD+V+
Sbjct: 61 ENGVCLVKGKACKSHKDC---PSDCACYTAGHCGDWVL 94

[Close]

BLAST of Lcy11g004490 vs. ExPASy TrEMBL
Match: A0A5D3E009 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00630 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.3e-09
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 1  MESKKN---IGFAAMMMVMMV-MIATVADSASATENMVVELVTDRRGANAFPRK-MLKNG 60
          MESKKN   +  A ++++M+V MIAT+ADS   TEN+    V +  G++AFPRK ++KNG
Sbjct: 1  MESKKNSTGLSVATVVVMMVVFMIATLADSTITTENVASGAVVN-GGSHAFPRKNIMKNG 60

Query: 61 G-NGVCPIKGWPCSPAYGCGPFSDSCACYTAGFCGDFVV 94
            NGVC +KG  C     C     +CACYTAG CGD+V+
Sbjct: 61 DQNGVCLVKGKACKSHKDC---PSNCACYTAGHCGDWVL 95

[Close]

BLAST of Lcy11g004490 vs. NCBI nr
Match: KAA0044337.1 (hypothetical protein E6C27_scaffold46G00620 [Cucumis melo var. makuwa] >TYK29466.1 hypothetical protein E5676_scaffold655G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 2.2e-28
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 5  KNIGFAAMMMVMMVMIATVADSASATENMVVELVTDRRGANAFPRKMLKNG-GNGVCPIK 64
          +NIG AA MMVMM++IATV +SAS TE M ++LVTD   A +FPRKM++NG GNGVCPI 
Sbjct: 6  RNIGAAATMMVMMLLIATVVESASPTEKM-IKLVTDHHAAGSFPRKMMRNGKGNGVCPIT 65

Query: 65 GWPCSPAYGCGPFSDSCACYTAGFCGDFV 93
          GWPC+PAYGCGPFSDSCACYTAG CGDFV
Sbjct: 66 GWPCNPAYGCGPFSDSCACYTAGHCGDFV 93

[Close]

BLAST of Lcy11g004490 vs. NCBI nr
Match: KAA0044336.1 (hypothetical protein E6C27_scaffold46G00610 [Cucumis melo var. makuwa] >TYK29465.1 hypothetical protein E5676_scaffold655G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 8.8e-25
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 5  KNIGFAAMMMVMMVMIATVADS-ASATENMVVELVTDRRGANAFPRKMLKNG-GNGVCPI 64
          KN+G  A MMVMM++IATV +S AS TE  ++ELVTD   A++FPRKM++NG GNGVCPI
Sbjct: 3  KNMGAEATMMVMMLLIATVVESAASPTEKAMIELVTDHHAASSFPRKMMRNGKGNGVCPI 62

Query: 65 KGWPCSPAYGCGPFSDSCACYTAGFCGDFV 93
          +GWPC PA+GCGP S  CACYT+G+CGD+V
Sbjct: 63 RGWPCIPAFGCGPLSGVCACYTSGYCGDYV 92

[Close]

BLAST of Lcy11g004490 vs. NCBI nr
Match: KGN52762.1 (hypothetical protein Csa_014579 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 6.3e-23
Identity = 63/92 (68.48%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 5  KNIGFA-AMMMVMMVMIATVADSASATENM-VVELVTDRRGANAFPRKMLKNG-GNGVCP 64
          KNIG A A MMVMM++IATV +SAS TE + ++ELVT+   A++FPRKM++NG GNGVCP
Sbjct: 6  KNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKGNGVCP 65

Query: 65 IKGWPCSPAY-GCGPFSDSCACYTAGFCGDFV 93
          I G PC+P Y GCGPFSD+CACYTAG CGDFV
Sbjct: 66 IIGRPCNPEYGGCGPFSDTCACYTAGHCGDFV 97

[Close]

BLAST of Lcy11g004490 vs. NCBI nr
Match: KGN52763.1 (hypothetical protein Csa_014543 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 51/98 (52.04%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1  MES-KKNIGFAAMMMVMMV--MIATVADSAS-ATENMVVELVTDRRGANAFPRK-MLKNG 60
          MES KK+I   A ++V+MV  MIAT+ADSA+ ATEN+   ++ D  G++AFPRK ++KNG
Sbjct: 1  MESKKKSIHTVATVVVVMVAFMIATLADSATIATENVAAGVLVD-GGSHAFPRKNVVKNG 60

Query: 61 GNGVCPIKGWPCSPAYGCGPFSDSCACYTAGFCGDFVV 94
           NGVC +KG  C     C      CACYTAG CGD+V+
Sbjct: 61 ENGVCLVKGKACKSHKDC---PSDCACYTAGHCGDWVL 94

[Close]

BLAST of Lcy11g004490 vs. NCBI nr
Match: KAA0044338.1 (hypothetical protein E6C27_scaffold46G00630 [Cucumis melo var. makuwa] >TYK29467.1 hypothetical protein E5676_scaffold655G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 1  MESKKN---IGFAAMMMVMMV-MIATVADSASATENMVVELVTDRRGANAFPRK-MLKNG 60
          MESKKN   +  A ++++M+V MIAT+ADS   TEN+    V +  G++AFPRK ++KNG
Sbjct: 1  MESKKNSTGLSVATVVVMMVVFMIATLADSTITTENVASGAVVN-GGSHAFPRKNIMKNG 60

Query: 61 G-NGVCPIKGWPCSPAYGCGPFSDSCACYTAGFCGDFVV 94
            NGVC +KG  C     C     +CACYTAG CGD+V+
Sbjct: 61 DQNGVCLVKGKACKSHKDC---PSNCACYTAGHCGDWVL 95

The following BLAST results are available for this feature:

BLAST of Lcy11g004490 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g004490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0N0	1.1e-28	74.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E254	4.2e-25	65.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KWE4	3.0e-23	68.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000820 PE=4 SV=1	[more]
A0A0A0KT53	5.0e-10	52.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000830 PE=4 SV=1	[more]
A0A5D3E009	7.3e-09	48.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy11g004490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044337.1	2.2e-28	74.16	hypothetical protein E6C27_scaffold46G00620 [Cucumis melo var. makuwa] >TYK29466...	[more]
KAA0044336.1	8.8e-25	65.56	hypothetical protein E6C27_scaffold46G00610 [Cucumis melo var. makuwa] >TYK29465...	[more]
KGN52762.1	6.3e-23	68.48	hypothetical protein Csa_014579 [Cucumis sativus]	[more]
KGN52763.1	1.0e-09	52.04	hypothetical protein Csa_014543 [Cucumis sativus]	[more]
KAA0044338.1	1.5e-08	48.48	hypothetical protein E6C27_scaffold46G00630 [Cucumis melo var. makuwa] >TYK29467...	[more]

BLAST of Lcy11g004490 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g004490.1	Lcy11g004490.1	mRNA