Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAGTGGTAATGGAGGCATTGGCATGTAACTATAGTTCTGGTGTCGAAGTGAAATGGAGAGAGAGAAACTAGTGAAGTTTTGATATGGTGTACTTTTGCCTTTCATCTTAAATGGATATGGACTTGGGCGGTCGAGGATGCATTCTTATTTTGTTACTGTTGCCAAAATGTTATATAACAATCTTCGAGAGGTCACGTTTTTATCTAGACTTTGTATAGTGACAATGTCTTGCATGGGAAAATTTAGAATATCTCTTCAACCTTTCCATTCTTGCCTTCTCCTCTCATGATCTAGTATCTTTGTTCGCTTTTTCTTTTTTTCTTTTTTAAAGCGGGGTTGGTATAAGGATTCAAAGGAACAGAACAAGGATAACCATAGGGCATCTGGAAAGACGACAACTTATAATTCACAGCAAAGAGATGAAATACCACAAACTGCAAGGGAGGATAGTCACACAAGGAACCGCGACGGGTCCTCTAAACTGGAGGTTGATGCACCGGCTCCTACTCGGAAAAGGCCTGCGTTTAGGGAGAAGAAGGTTACAGTAGACAATGAAAATGTTGAGAAAGCAGCTATGGTATCGGAGAGTAAGAAATCGAGTGATCCACACCATCCTCAGGATGGAAGGGAACAGAGAGAAGAAAGAGGGCGCGATACCACCCGTTATTCAGAGAAACTTAATAAGCATGTCTCCAGAGACATAACTACCAAAAGGGATGAGATGAAGAAAGGCAGCTACCCAGTGAGAGAAAGGTATGGCAATGGAGGTGGTGGTGGGAATTACAGGGGAGAAGAGATAGATTTGGTGGGAGGCAAGGATATCGAGCCGGTGGTACTCGTGTAG
mRNA sequence
ATGGATCAGTGTATCTTTGTTCGCTTTTTCTTTTTTTCTTTTTTAAAGCGGGGTTGGTATAAGGATTCAAAGGAACAGAACAAGGATAACCATAGGGCATCTGGAAAGACGACAACTTATAATTCACAGCAAAGAGATGAAATACCACAAACTGCAAGGGAGGATAGTCACACAAGGAACCGCGACGGGTCCTCTAAACTGGAGGTTGATGCACCGGCTCCTACTCGGAAAAGGCCTGCGTTTAGGGAGAAGAAGGTTACAGTAGACAATGAAAATGTTGAGAAAGCAGCTATGGTATCGGAGAGTAAGAAATCGAGTGATCCACACCATCCTCAGGATGGAAGGGAACAGAGAGAAGAAAGAGGGCGCGATACCACCCGTTATTCAGAGAAACTTAATAAGCATGTCTCCAGAGACATAACTACCAAAAGGGATGAGATGAAGAAAGGCAGCTACCCAGTGAGAGAAAGGTATGGCAATGGAGGTGGTGGTGGGAATTACAGGGGAGAAGAGATAGATTTGGTGGGAGGCAAGGATATCGAGCCGGTGGTACTCGTGTAG
Coding sequence (CDS)
ATGGATCAGTGTATCTTTGTTCGCTTTTTCTTTTTTTCTTTTTTAAAGCGGGGTTGGTATAAGGATTCAAAGGAACAGAACAAGGATAACCATAGGGCATCTGGAAAGACGACAACTTATAATTCACAGCAAAGAGATGAAATACCACAAACTGCAAGGGAGGATAGTCACACAAGGAACCGCGACGGGTCCTCTAAACTGGAGGTTGATGCACCGGCTCCTACTCGGAAAAGGCCTGCGTTTAGGGAGAAGAAGGTTACAGTAGACAATGAAAATGTTGAGAAAGCAGCTATGGTATCGGAGAGTAAGAAATCGAGTGATCCACACCATCCTCAGGATGGAAGGGAACAGAGAGAAGAAAGAGGGCGCGATACCACCCGTTATTCAGAGAAACTTAATAAGCATGTCTCCAGAGACATAACTACCAAAAGGGATGAGATGAAGAAAGGCAGCTACCCAGTGAGAGAAAGGTATGGCAATGGAGGTGGTGGTGGGAATTACAGGGGAGAAGAGATAGATTTGGTGGGAGGCAAGGATATCGAGCCGGTGGTACTCGTGTAG
Protein sequence
MDQCIFVRFFFFSFLKRGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTRKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGREQREERGRDTTRYSEKLNKHVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEPVVLV
Homology
BLAST of Lcy11g004420 vs. ExPASy TrEMBL
Match:
A0A6J1FPJ0 (pre-mRNA-splicing factor CWC25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447638 PE=4 SV=1)
HSP 1 Score: 235.0 bits (598), Expect = 2.6e-58
Identity = 124/166 (74.70%), Postives = 141/166 (84.94%), Query Frame = 0
Query: 17 RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTR 76
RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP R
Sbjct: 136 RGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPAR 195
Query: 77 KRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGREQREERGRDTTRYSEKLNKHV 136
KRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE+REERGRD TRYS+KL+KHV
Sbjct: 196 KRPAFREKKITPDNENFEKAGMASESKKPSDPHQPQDGRERREERGRD-TRYSDKLSKHV 255
Query: 137 SRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP 183
+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG D GG+ P
Sbjct: 256 TGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGR--DRFGGRQGYP 298
BLAST of Lcy11g004420 vs. ExPASy TrEMBL
Match:
A0A6J1J5K1 (pre-mRNA-splicing factor CWC25 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482807 PE=4 SV=1)
HSP 1 Score: 233.8 bits (595), Expect = 5.8e-58
Identity = 124/166 (74.70%), Postives = 141/166 (84.94%), Query Frame = 0
Query: 17 RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTR 76
RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP R
Sbjct: 136 RGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPAR 195
Query: 77 KRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGREQREERGRDTTRYSEKLNKHV 136
KRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE+REERGRD TRYS+KL+KHV
Sbjct: 196 KRPAFREKKITPDNENFEKAGMASESKKLSDPHPPQDGRERREERGRD-TRYSDKLSKHV 255
Query: 137 SRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP 183
+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG D GG+ P
Sbjct: 256 TGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGR--DRFGGRQGYP 298
BLAST of Lcy11g004420 vs. ExPASy TrEMBL
Match:
A0A6J1FQX4 (pre-mRNA-splicing factor CWC25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447638 PE=4 SV=1)
HSP 1 Score: 205.7 bits (522), Expect = 1.7e-49
Identity = 114/166 (68.67%), Postives = 131/166 (78.92%), Query Frame = 0
Query: 17 RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTR 76
RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP R
Sbjct: 136 RGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPAR 195
Query: 77 KRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGREQREERGRDTTRYSEKLNKHV 136
KRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE+REERGRD TRYS+KL+KHV
Sbjct: 196 KRPAFREKKITPDNENFEKAGMASESKKPSDPHQPQDGRERREERGRD-TRYSDKLSKHV 255
Query: 137 SRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP 183
+ D+ +KRDEMK+ GGGGNYRG D GG+ P
Sbjct: 256 TGDMASKRDEMKR------------GGGGNYRGR--DRFGGRQGYP 286
BLAST of Lcy11g004420 vs. ExPASy TrEMBL
Match:
A0A6J1JAV5 (pre-mRNA-splicing factor CWC25 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482807 PE=4 SV=1)
HSP 1 Score: 204.5 bits (519), Expect = 3.8e-49
Identity = 114/166 (68.67%), Postives = 131/166 (78.92%), Query Frame = 0
Query: 17 RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTR 76
RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP R
Sbjct: 136 RGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPAR 195
Query: 77 KRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGREQREERGRDTTRYSEKLNKHV 136
KRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE+REERGRD TRYS+KL+KHV
Sbjct: 196 KRPAFREKKITPDNENFEKAGMASESKKLSDPHPPQDGRERREERGRD-TRYSDKLSKHV 255
Query: 137 SRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP 183
+ D+ +KRDEMK+ GGGGNYRG D GG+ P
Sbjct: 256 TGDMASKRDEMKR------------GGGGNYRGR--DRFGGRQGYP 286
BLAST of Lcy11g004420 vs. ExPASy TrEMBL
Match:
A0A0A0KV12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000750 PE=4 SV=1)
HSP 1 Score: 198.0 bits (502), Expect = 3.5e-47
Identity = 114/164 (69.51%), Postives = 130/164 (79.27%), Query Frame = 0
Query: 16 KRGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPT 75
+RGW+KDSK+ +KD+ RASGK+ TY SQQRDE PQ ARED H DGSSKLEVDA P
Sbjct: 135 ERGWWKDSKDPDKDSDRASGKSLTYKSQQRDEKPQAAREDRH---HDGSSKLEVDALTPA 194
Query: 76 RKRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGREQREERGRDTTRYSEKL-NK 135
RKRPAFREKK+TVDNE+ EK AMV ESKKS+D H Q+GRE+REERGRD RYSEKL NK
Sbjct: 195 RKRPAFREKKITVDNEDGEKVAMVPESKKSNDLHQIQEGRERREERGRD-PRYSEKLNNK 254
Query: 136 HVSRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGK 179
H + D+ +KRDEMK+ YPVRERYGNG GGGNYRG D GG+
Sbjct: 255 HSNGDMASKRDEMKRVGYPVRERYGNGSGGGNYRGR--DRFGGR 292
BLAST of Lcy11g004420 vs. NCBI nr
Match:
XP_022942670.1 (pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata] >XP_022942671.1 pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata])
HSP 1 Score: 235.0 bits (598), Expect = 5.4e-58
Identity = 124/166 (74.70%), Postives = 141/166 (84.94%), Query Frame = 0
Query: 17 RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTR 76
RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP R
Sbjct: 136 RGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPAR 195
Query: 77 KRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGREQREERGRDTTRYSEKLNKHV 136
KRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE+REERGRD TRYS+KL+KHV
Sbjct: 196 KRPAFREKKITPDNENFEKAGMASESKKPSDPHQPQDGRERREERGRD-TRYSDKLSKHV 255
Query: 137 SRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP 183
+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG D GG+ P
Sbjct: 256 TGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGR--DRFGGRQGYP 298
BLAST of Lcy11g004420 vs. NCBI nr
Match:
KAG6600285.1 (hypothetical protein SDJN03_05518, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030943.1 hypothetical protein SDJN02_04980 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 235.0 bits (598), Expect = 5.4e-58
Identity = 124/166 (74.70%), Postives = 141/166 (84.94%), Query Frame = 0
Query: 17 RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTR 76
RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP R
Sbjct: 136 RGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPAR 195
Query: 77 KRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGREQREERGRDTTRYSEKLNKHV 136
KRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE+REERGRD TRYS+KL+KHV
Sbjct: 196 KRPAFREKKITPDNENFEKAGMASESKKPSDPHQPQDGRERREERGRD-TRYSDKLSKHV 255
Query: 137 SRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP 183
+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG D GG+ P
Sbjct: 256 TGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGR--DRFGGRQGYP 298
BLAST of Lcy11g004420 vs. NCBI nr
Match:
XP_023548006.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo] >XP_023548014.1 pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 234.6 bits (597), Expect = 7.0e-58
Identity = 124/166 (74.70%), Postives = 141/166 (84.94%), Query Frame = 0
Query: 17 RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTR 76
RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP R
Sbjct: 136 RGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPAR 195
Query: 77 KRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGREQREERGRDTTRYSEKLNKHV 136
KRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE+REERGRD TRYS+KL+KHV
Sbjct: 196 KRPAFREKKITPDNENFEKAGMASESKKLSDPHQPQDGRERREERGRD-TRYSDKLSKHV 255
Query: 137 SRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP 183
+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG D GG+ P
Sbjct: 256 TGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGR--DRFGGRQGYP 298
BLAST of Lcy11g004420 vs. NCBI nr
Match:
XP_023521659.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 234.6 bits (597), Expect = 7.0e-58
Identity = 124/166 (74.70%), Postives = 141/166 (84.94%), Query Frame = 0
Query: 17 RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTR 76
RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP R
Sbjct: 136 RGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPAR 195
Query: 77 KRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGREQREERGRDTTRYSEKLNKHV 136
KRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE+REERGRD TRYS+KL+KHV
Sbjct: 196 KRPAFREKKITPDNENFEKAGMASESKKLSDPHQPQDGRERREERGRD-TRYSDKLSKHV 255
Query: 137 SRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP 183
+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG D GG+ P
Sbjct: 256 TGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGR--DRFGGRQGYP 298
BLAST of Lcy11g004420 vs. NCBI nr
Match:
XP_022984546.1 (pre-mRNA-splicing factor CWC25 isoform X1 [Cucurbita maxima])
HSP 1 Score: 233.8 bits (595), Expect = 1.2e-57
Identity = 124/166 (74.70%), Postives = 141/166 (84.94%), Query Frame = 0
Query: 17 RGWYKDSKEQNKDNHRASGKTTTYNSQQRDEIPQTAREDSHTRNRDGSSKLEVDAPAPTR 76
RGW+KDSKEQ+K++ RASGKT TYNSQ+RDEIPQT +ED+HTR RDGSSKLEVD+ AP R
Sbjct: 136 RGWWKDSKEQDKNSDRASGKTATYNSQRRDEIPQTVKEDNHTRTRDGSSKLEVDSSAPAR 195
Query: 77 KRPAFREKKVTVDNENVEKAAMVSESKKSSDPHHPQDGREQREERGRDTTRYSEKLNKHV 136
KRPAFREKK+T DNEN EKA M SESKK SDPH PQDGRE+REERGRD TRYS+KL+KHV
Sbjct: 196 KRPAFREKKITPDNENFEKAGMASESKKLSDPHPPQDGRERREERGRD-TRYSDKLSKHV 255
Query: 137 SRDITTKRDEMKKGSYPVRERYGNGGGGGNYRGEEIDLVGGKDIEP 183
+ D+ +KRDEMK+G Y VRERYGNGGGGGNYRG D GG+ P
Sbjct: 256 TGDMASKRDEMKRGGYSVRERYGNGGGGGNYRGR--DRFGGRQGYP 298
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1FPJ0 | 2.6e-58 | 74.70 | pre-mRNA-splicing factor CWC25-like isoform X1 OS=Cucurbita moschata OX=3662 GN=... | [more] |
A0A6J1J5K1 | 5.8e-58 | 74.70 | pre-mRNA-splicing factor CWC25 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114... | [more] |
A0A6J1FQX4 | 1.7e-49 | 68.67 | pre-mRNA-splicing factor CWC25-like isoform X2 OS=Cucurbita moschata OX=3662 GN=... | [more] |
A0A6J1JAV5 | 3.8e-49 | 68.67 | pre-mRNA-splicing factor CWC25 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114... | [more] |
A0A0A0KV12 | 3.5e-47 | 69.51 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000750 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_022942670.1 | 5.4e-58 | 74.70 | pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata] >XP_02294267... | [more] |
KAG6600285.1 | 5.4e-58 | 74.70 | hypothetical protein SDJN03_05518, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023548006.1 | 7.0e-58 | 74.70 | pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo] >XP_023548014.1... | [more] |
XP_023521659.1 | 7.0e-58 | 74.70 | pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022984546.1 | 1.2e-57 | 74.70 | pre-mRNA-splicing factor CWC25 isoform X1 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |