Lcy11g003850 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g003850
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Proline-rich receptor-like protein kinase PERK2
Location	Chr11: 3764501 .. 3765085 (+)
RNA-Seq Expression	Lcy11g003850
Synteny	Lcy11g003850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGCTCCATAGTTCCCATCATAGATATGGCTTCTTCTAACTTCTTCATCTTAGCCTTCATGGTTGCTATGGCATTTTTGAGCGTCGACGCTGGTCGAACTACTCGCCATCTTCTGCAAACCGCTCAGCCTTCGATTCCAAATTTGCCACCACTGCCATTGCTACCTAAGCCAACTGCGCTACCACCTCTACCACCAAGTATTCCATCCATCCCGAATCTCCCACAACCTACATTGCCAATTGCTCAACCTCCGCTACCTAAGCTTACACTTCCTCCCGGCTTCCCGATGAACATCCCGACCGGAGCTGCATTGCCTCCTCTCCCGACAGCTTCGCTTCCGAACTTGCCATCCCTCCCATCTATCCCGCCTTCACTTCCATCGCTCCCGTTCTTCTCTCCTCCACCTGCAACTTCTTCCCCTTGAGTTGGTATAGAATAGTTGTTATCTTTCCTATTGTCTTTGAGTATGATTGTTTTTATATATTTTCAGTGGTGATTCTTCATGTGTGTTGCTGTTGGGAGAGCTTGTTTCAGTTTGTATTGTATCTCTTTTACATATATAATATTTTCCTACTTAGCTTC

mRNA sequence

CAAAAGCTCCATAGTTCCCATCATAGATATGGCTTCTTCTAACTTCTTCATCTTAGCCTTCATGGTTGCTATGGCATTTTTGAGCGTCGACGCTGGTCGAACTACTCGCCATCTTCTGCAAACCGCTCAGCCTTCGATTCCAAATTTGCCACCACTGCCATTGCTACCTAAGCCAACTGCGCTACCACCTCTACCACCAAGTATTCCATCCATCCCGAATCTCCCACAACCTACATTGCCAATTGCTCAACCTCCGCTACCTAAGCTTACACTTCCTCCCGGCTTCCCGATGAACATCCCGACCGGAGCTGCATTGCCTCCTCTCCCGACAGCTTCGCTTCCGAACTTGCCATCCCTCCCATCTATCCCGCCTTCACTTCCATCGCTCCCGTTCTTCTCTCCTCCACCTGCAACTTCTTCCCCTTGAGTTGGTATAGAATAGTTGTTATCTTTCCTATTGTCTTTGAGTATGATTGTTTTTATATATTTTCAGTGGTGATTCTTCATGTGTGTTGCTGTTGGGAGAGCTTGTTTCAGTTTGTATTGTATCTCTTTTACATATATAATATTTTCCTACTTAGCTTC

Coding sequence (CDS)

ATGGCTTCTTCTAACTTCTTCATCTTAGCCTTCATGGTTGCTATGGCATTTTTGAGCGTCGACGCTGGTCGAACTACTCGCCATCTTCTGCAAACCGCTCAGCCTTCGATTCCAAATTTGCCACCACTGCCATTGCTACCTAAGCCAACTGCGCTACCACCTCTACCACCAAGTATTCCATCCATCCCGAATCTCCCACAACCTACATTGCCAATTGCTCAACCTCCGCTACCTAAGCTTACACTTCCTCCCGGCTTCCCGATGAACATCCCGACCGGAGCTGCATTGCCTCCTCTCCCGACAGCTTCGCTTCCGAACTTGCCATCCCTCCCATCTATCCCGCCTTCACTTCCATCGCTCCCGTTCTTCTCTCCTCCACCTGCAACTTCTTCCCCTTGA

Protein sequence

MASSNFFILAFMVAMAFLSVDAGRTTRHLLQTAQPSIPNLPPLPLLPKPTALPPLPPSIPSIPNLPQPTLPIAQPPLPKLTLPPGFPMNIPTGAALPPLPTASLPNLPSLPSIPPSLPSLPFFSPPPATSSP

Homology

[Close]

BLAST of Lcy11g003850 vs. ExPASy TrEMBL
Match: A0A0A0KZV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182280 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-28
Identity = 95/140 (67.86%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 1   MASSNFFILAFMVAMAFLSVDAGRTTRHLLQTAQPSIPNLPPLPLLPKPTALPPLP---- 60
           MAS N FIL FMV   F SVDA RT+RHLLQT    I NLPP+P LPKP+ALPPLP    
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQT----ILNLPPMPSLPKPSALPPLPPMPT 60

Query: 61  -PSIPSIPNLPQPTLPIAQPPLPKLTLP--PGFPMNIPTGAALPPLPTASLPNLPSLPSI 120
            PSIPSIPN PQP+       LPKLTLP  P  PMNIPT   LPPLPT SLPNLP L SI
Sbjct: 61  GPSIPSIPNFPQPS-------LPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSI 120

Query: 121 PPSLP-SLPFFSPPPATSSP 133
             +LP SLPFFSPPPATSSP
Sbjct: 121 STTLPSSLPFFSPPPATSSP 129

[Close]

BLAST of Lcy11g003850 vs. ExPASy TrEMBL
Match: A0A5D3C6P2 (Proline-rich receptor-like protein kinase PERK2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00400 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.9e-25
Identity = 78/133 (58.65%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 1   MASSNFFILAFMVAMAFLSVDAGRTTRHLLQTAQPSIPNLPPLPLLPKPTALPPLPP-SI 60
           MASS F I+AFM  +A  S+D G+  RHLLQTA P +PNLP +     PT +PPLP  S 
Sbjct: 1   MASSKFLIIAFMATLALSSIDVGQAARHLLQTAPPLVPNLPVI-----PTGIPPLPALSN 60

Query: 61  PSIPNLPQPTLP-IAQPPLPKLTLPPGFPMNIPTGAALPPLPTASLPNLPSLPSIPPSLP 120
           P++PNLPQPTLP +  PPL      P  P+NIP+G ALPPLP  +LPN PS+P+IP S P
Sbjct: 61  PTLPNLPQPTLPKVNLPPL------PSSPVNIPSGLALPPLPNMALPNFPSIPTIPTSFP 120

Query: 121 SLPFFSPPPATSS 132
           S+PF SPPPATSS
Sbjct: 121 SIPFLSPPPATSS 122

[Close]

BLAST of Lcy11g003850 vs. ExPASy TrEMBL
Match: A0A6J1J782 (uncharacterized protein LOC111483197 OS=Cucurbita maxima OX=3661 GN=LOC111483197 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.1e-24
Identity = 79/135 (58.52%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 1   MASSNFFILAFMVAMAFLSVDAGRTTRHLLQTAQPSIPNLPPLPLLPKPTALPPLP--PS 60
           MASSN+FI+AFM  + F ++D GR  R LLQTAQPS+P LP LP       LPP P  P 
Sbjct: 1   MASSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLP------PLPPFPTVPG 60

Query: 61  IPSIPNLPQPTLPIAQPPLPKLTLPPGFPMNIPTGAALPPLPTASLPNLPSLPSIPPSLP 120
           +PSIPNLPQPTLP  QP LPK+   P FP  IPTG  LPPLPT        LPS P + P
Sbjct: 61  MPSIPNLPQPTLPTTQPSLPKMPPLPSFPGGIPTGVTLPPLPT--------LPSFPTTFP 120

Query: 121 SLPFFSPPP-ATSSP 133
           S+PF +PPP ATSSP
Sbjct: 121 SIPFLTPPPAATSSP 121

[Close]

BLAST of Lcy11g003850 vs. ExPASy TrEMBL
Match: A0A5A7TLS8 (Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00030 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.3e-21
Identity = 78/138 (56.52%), Postives = 90/138 (65.22%), Query Frame = 0


Query: 1   MASSNFF-ILAFMVAMAFLSVDAGRTTRHLLQTAQPSIPNLPPLPLLPKPTALPPLP--- 60
           MAS  +F IL FM  + F ++D  R  R LLQTA    PN+P LP LPKP  LPPLP   
Sbjct: 1   MASPKYFIILTFMATLVFSAIDTSRAARCLLQTAP---PNMPGLPSLPKPIGLPPLPPLP 60

Query: 61  --PSIPSIPNLPQPTLPIAQPPLPKLTLPPGFPMNIP-TGAALPPLPTASLPNLPSLPSI 120
             P + SIPN PQPT P  QP LPKL   P  P+NIP TGA LPPLPT    +LP+LPSI
Sbjct: 61  MGPGMSSIPNFPQPTFPTIQPSLPKLPPLPSLPLNIPTTGAVLPPLPT----SLPTLPSI 120

Query: 121 PPSLPSLPFFSPPPATSS 132
           P + PS+PF +PPPAT S
Sbjct: 121 PTTFPSIPFLTPPPATHS 131

[Close]

BLAST of Lcy11g003850 vs. ExPASy TrEMBL
Match: A0A5D3C8R8 (Proline-rich receptor-like protein kinase PERK2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00410 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.9e-21
Identity = 71/132 (53.79%), Postives = 88/132 (66.67%), Query Frame = 0


Query: 1   MASSNFFILAFMVAMAFLSVDAGRTTRHLLQTAQPSIPNLPPLPLLPKPTALPPLPP-SI 60
           MASS F I+AFM  +A  S++ G+  RHLLQT  P +PNLP +     PT +PP P    
Sbjct: 1   MASSKFLIIAFMATLALSSINFGQAARHLLQTTPPLVPNLPAI-----PTGIPPFPALPN 60

Query: 61  PSIPNLPQPTLPIAQPPLPKLTLPPGFPMNIPTGAALPPLPTASLPNLPSLPSIPPSLPS 120
           P++PNLPQPT       +PK+ LPP     +P G ALPPLPT +LPN PS+P+IP S PS
Sbjct: 61  PTLPNLPQPT-------IPKVNLPP-----LPNGLALPPLPTMALPNFPSIPTIPTSFPS 115

Query: 121 LPFFSPPPATSS 132
           +PF SPPPATSS
Sbjct: 121 IPFLSPPPATSS 115

[Close]

BLAST of Lcy11g003850 vs. NCBI nr
Match: XP_038904306.1 (protein PELPK1-like [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-28
Identity = 94/136 (69.12%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 1   MASSNFFILAFMVAMAFLSVDAGRTTRHLLQTAQPSIPNLPPLPLLPKPTALPPLP-PSI 60
           MAS N+FILA MVA+ F SVDA RTTRHLLQT  P+ P LPP+P LP P    P+  PSI
Sbjct: 1   MASFNYFILAVMVALTFSSVDAARTTRHLLQTI-PNFPPLPPMPSLPLPALPNPMTGPSI 60

Query: 61  PSIPNLPQPTLPIAQPPLPKLTLP--PGFPMNIPTGAALPPLPTASLPNLPSLPSIPPSL 120
           PSIPNLPQP+       LPKLTLP  P FP +IPT  ALPPL TASLPNLPSLPSIP +L
Sbjct: 61  PSIPNLPQPS-------LPKLTLPPLPSFPTSIPTKVALPPLSTASLPNLPSLPSIPTTL 120

Query: 121 P-SLPFFSPPPATSSP 133
           P SLPFF PPPATSSP
Sbjct: 121 PSSLPFFPPPPATSSP 128

[Close]

BLAST of Lcy11g003850 vs. NCBI nr
Match: KGN53897.1 (hypothetical protein Csa_011821 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-28
Identity = 95/140 (67.86%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 1   MASSNFFILAFMVAMAFLSVDAGRTTRHLLQTAQPSIPNLPPLPLLPKPTALPPLP---- 60
           MAS N FIL FMV   F SVDA RT+RHLLQT    I NLPP+P LPKP+ALPPLP    
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQT----ILNLPPMPSLPKPSALPPLPPMPT 60

Query: 61  -PSIPSIPNLPQPTLPIAQPPLPKLTLP--PGFPMNIPTGAALPPLPTASLPNLPSLPSI 120
            PSIPSIPN PQP+       LPKLTLP  P  PMNIPT   LPPLPT SLPNLP L SI
Sbjct: 61  GPSIPSIPNFPQPS-------LPKLTLPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSI 120

Query: 121 PPSLP-SLPFFSPPPATSSP 133
             +LP SLPFFSPPPATSSP
Sbjct: 121 STTLPSSLPFFSPPPATSSP 129

[Close]

BLAST of Lcy11g003850 vs. NCBI nr
Match: KAA0056641.1 (proline-rich receptor-like protein kinase PERK2 [Cucumis melo var. makuwa] >TYK07567.1 proline-rich receptor-like protein kinase PERK2 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-24
Identity = 78/133 (58.65%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 1   MASSNFFILAFMVAMAFLSVDAGRTTRHLLQTAQPSIPNLPPLPLLPKPTALPPLPP-SI 60
           MASS F I+AFM  +A  S+D G+  RHLLQTA P +PNLP +     PT +PPLP  S 
Sbjct: 1   MASSKFLIIAFMATLALSSIDVGQAARHLLQTAPPLVPNLPVI-----PTGIPPLPALSN 60

Query: 61  PSIPNLPQPTLP-IAQPPLPKLTLPPGFPMNIPTGAALPPLPTASLPNLPSLPSIPPSLP 120
           P++PNLPQPTLP +  PPL      P  P+NIP+G ALPPLP  +LPN PS+P+IP S P
Sbjct: 61  PTLPNLPQPTLPKVNLPPL------PSSPVNIPSGLALPPLPNMALPNFPSIPTIPTSFP 120

Query: 121 SLPFFSPPPATSS 132
           S+PF SPPPATSS
Sbjct: 121 SIPFLSPPPATSS 122

[Close]

BLAST of Lcy11g003850 vs. NCBI nr
Match: XP_022985116.1 (uncharacterized protein LOC111483197 [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 79/135 (58.52%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 1   MASSNFFILAFMVAMAFLSVDAGRTTRHLLQTAQPSIPNLPPLPLLPKPTALPPLP--PS 60
           MASSN+FI+AFM  + F ++D GR  R LLQTAQPS+P LP LP       LPP P  P 
Sbjct: 1   MASSNYFIMAFMATLVFSAIDTGRAARRLLQTAQPSVPGLPSLP------PLPPFPTVPG 60

Query: 61  IPSIPNLPQPTLPIAQPPLPKLTLPPGFPMNIPTGAALPPLPTASLPNLPSLPSIPPSLP 120
           +PSIPNLPQPTLP  QP LPK+   P FP  IPTG  LPPLPT        LPS P + P
Sbjct: 61  MPSIPNLPQPTLPTTQPSLPKMPPLPSFPGGIPTGVTLPPLPT--------LPSFPTTFP 120

Query: 121 SLPFFSPPP-ATSSP 133
           S+PF +PPP ATSSP
Sbjct: 121 SIPFLTPPPAATSSP 121

[Close]

BLAST of Lcy11g003850 vs. NCBI nr
Match: XP_038904304.1 (RNA-binding protein 12-like [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-23
Identity = 83/138 (60.14%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 1   MASSNF-FILAFMVAMAFLSVDAGRTTRHLLQTAQPSIPNLPPLPLLPKPTALPPLP--- 60
           MASS +  I+AFM  + F ++D GR  RHLLQTA    PN+P  P LPKPTALPPLP   
Sbjct: 1   MASSKYLMIIAFMAILVFSTIDTGRAARHLLQTAP---PNMPGFPSLPKPTALPPLPPLP 60

Query: 61  --PSIPSIPNLPQPTLPIAQPPLPKLTLPPGFPMNIP-TGAALPPLPTASLPNLPSLPSI 120
             P +PSIPNLPQPTLP + P LP L   P FP NIP TG  LPPLPT S   LP+LPSI
Sbjct: 61  TGPGMPSIPNLPQPTLPSSLPKLPPL---PSFPGNIPVTGVTLPPLPTTS---LPTLPSI 120

Query: 121 PPSLPSLPFFSPPPATSS 132
           P + PS+PF +PPPAT+S
Sbjct: 121 PTTFPSIPFLTPPPATTS 129

[Close]

BLAST of Lcy11g003850 vs. TAIR 10
Match: AT2G22510.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.8e-06
Identity = 50/138 (36.23%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 7   FILAFMVAMAFLSVDAG-RTTRHLLQ----------TAQPSIP--NLPPLP---LLPKPT 66
           ++ + ++A+ F S   G   +RHLLQ          T  P +P   +PP P    LP+PT
Sbjct: 4   WLSSLVIALTFTSFFTGLSASRHLLQSTPAITPPVTTTFPPLPTTTMPPFPPSTSLPQPT 63

Query: 67  ALPPLPPSIPSIPNLPQPTLPIAQPPLPKLTLPPGFPMNIPTGAALPPLPTASLPNLPSL 126
           A PPLP S   IP+LP P  PI  P  P++ + P FP++IP              N P  
Sbjct: 64  AFPPLPSS--QIPSLPNPAQPINIPNFPQINI-PNFPISIPN-------------NFPF- 123

Query: 127 PSIPPSLPSLPFFSPPPA 129
            ++P S+P++PFF+PPP+
Sbjct: 124 -NLPTSIPTIPFFTPPPS 123

[Close]

BLAST of Lcy11g003850 vs. TAIR 10
Match: AT5G15780.1 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.2e-04
Identity = 48/107 (44.86%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 35  PSI--PNLPPLPLLPKPTALPPL-----PPSIPSIPNLPQPTLPIAQPPLPKL-TLPP-- 94
           PSI  P LPP PL+P P +LPP+     PP++P+IP LP P  P   PP+P + TLPP  
Sbjct: 279 PSIPTPTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTP-TLPPIPTIPTLPPLP 338

Query: 95  -GFPMNIPTGAALPPLPTA---SLPNLPSLPSIPPSLPSLPFFSPPP 128
              P+ I    +LPP P +    LP +P LP IPP +P +P   P P
Sbjct: 339 VLPPVPIVNPPSLPPPPPSFPVPLPPVPGLPGIPP-VPLIPGIPPAP 383

The following BLAST results are available for this feature:

BLAST of Lcy11g003850 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g003850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZV3	1.5e-28	67.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G182280 PE=4 SV=1	[more]
A0A5D3C6P2	7.9e-25	58.65	Proline-rich receptor-like protein kinase PERK2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1J782	5.1e-24	58.52	uncharacterized protein LOC111483197 OS=Cucurbita maxima OX=3661 GN=LOC111483197...	[more]
A0A5A7TLS8	5.3e-21	56.52	Proline-rich receptor-like protein kinase PERK2 isoform X2 OS=Cucumis melo var. ...	[more]
A0A5D3C8R8	6.9e-21	53.79	Proline-rich receptor-like protein kinase PERK2 OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Lcy11g003850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904306.1	2.4e-28	69.12	protein PELPK1-like [Benincasa hispida]	[more]
KGN53897.1	3.2e-28	67.86	hypothetical protein Csa_011821 [Cucumis sativus]	[more]
KAA0056641.1	1.6e-24	58.65	proline-rich receptor-like protein kinase PERK2 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_022985116.1	1.1e-23	58.52	uncharacterized protein LOC111483197 [Cucurbita maxima]	[more]
XP_038904304.1	1.4e-23	60.14	RNA-binding protein 12-like [Benincasa hispida]	[more]

BLAST of Lcy11g003850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22510.1	2.8e-06	36.23	hydroxyproline-rich glycoprotein family protein	[more]
AT5G15780.1	1.2e-04	44.86	Pollen Ole e 1 allergen and extensin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..78
None	No IPR available	PANTHER	PTHR33088:SF33	PROTEIN APP1-LIKE	coord: 1..132
IPR044659	Protein PELPK-like	PANTHER	PTHR33088	MUCIN-2	coord: 1..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g003850.1	Lcy11g003850.1	mRNA