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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTTCGAACAAAAACTCAATGTTTTGGAAGGTTTTATTTGTTGTGATGCTCATTCTTACTTCTTCCCAATTGGCGTTTGGAAGACATTTTGCTGATGCTACTCCTCATAGATCTTGTAAGAATCACTTTTCTTCCATTCCTCAAAATGAATGTCTTTAATTCATTCAATTTAATTGAAGGATTTTTCTTTCCAATTTCCATGTTTTTCCATGCACGTTACATCACATGTTGGCTAATTTTGTTAAAAAAAAATATATTGTGATGGTATGATCTATCCAAAAAGGCCATGATAATATGATTTTTCTAGACATTAAATCTCTTCTAGTTTTGTTTGTGGGTTTTTGTCTTTCTTTCTTAAAAGATGTTTTACATAAATATAATTTCAGTATTATTTGTACTTGATCTCATACTTGTATTTGATTGCAGGTCATAACAAGAACAACCATAGGGATAAGGTGCATCTTTCAAGAGTTCTATTGGCTTCCCAAAAAGATGTCCCAAGAAACGGTAACTATGGAGGTGGAGGAGGGAACCCGTCAAGTTAA mRNA sequence ATGGCTTCGAACAAAAACTCAATGTTTTGGAAGGTTTTATTTGTTGTGATGCTCATTCTTACTTCTTCCCAATTGGCGTTTGGAAGACATTTTGCTGATGCTACTCCTCATAGATCTTGTCATAACAAGAACAACCATAGGGATAAGGTGCATCTTTCAAGAGTTCTATTGGCTTCCCAAAAAGATGTCCCAAGAAACGGTAACTATGGAGGTGGAGGAGGGAACCCGTCAAGTTAA Coding sequence (CDS) ATGGCTTCGAACAAAAACTCAATGTTTTGGAAGGTTTTATTTGTTGTGATGCTCATTCTTACTTCTTCCCAATTGGCGTTTGGAAGACATTTTGCTGATGCTACTCCTCATAGATCTTGTCATAACAAGAACAACCATAGGGATAAGGTGCATCTTTCAAGAGTTCTATTGGCTTCCCAAAAAGATGTCCCAAGAAACGGTAACTATGGAGGTGGAGGAGGGAACCCGTCAAGTTAA Protein sequence MASNKNSMFWKVLFVVMLILTSSQLAFGRHFADATPHRSCHNKNNHRDKVHLSRVLLASQKDVPRNGNYGGGGGNPSS
Homology
BLAST of Lcy11g002760 vs. ExPASy TrEMBL
Match: A0A0A0KUB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017210 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10 Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 1 MASNKNSMFWKVLFVVMLILTSSQ-LAFGR-HFADATPHRSCHNKNNHRDKVHLSRVLLA 60
MASNK+SM +K LFVV+LI+TSSQ +AFGR H +DA PH +K++ + +SRV
Sbjct: 1 MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60
Query: 61 SQKDVPRNGNYGGGGGNPSS 79
SQ D PR GNYGG G P+S
Sbjct: 61 SQTDTPRKGNYGGRGEGPTS 80
BLAST of Lcy11g002760 vs. NCBI nr
Match: KAG6576807.1 (hypothetical protein SDJN03_24381, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 92.0 bits (227), Expect = 2.4e-15 Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 0
Query: 1 MASNKNSMFWKVLFVVMLILTSSQLAFGRHFADATPHRSCHNKNNHRDKVHLSRVLLASQ 60
MASN SM WKVLF +MLIL SS +AFGRH ADATP RS +N+NN K +SR LL SQ
Sbjct: 1 MASNNKSMLWKVLFAIMLILCSSHMAFGRHIADATPRRS-YNENN---KESISRALLGSQ 60
Query: 61 KDVPRNGNYGGGGGNPSS 79
DVPR GNY GGG PSS
Sbjct: 61 TDVPRRGNY--GGGEPSS 72
BLAST of Lcy11g002760 vs. NCBI nr
Match: KAE8649130.1 (hypothetical protein Csa_014869 [Cucumis sativus]) HSP 1 Score: 75.1 bits (183), Expect = 3.0e-10 Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 1 MASNKNSMFWKVLFVVMLILTSSQ-LAFGR-HFADATPHRSCHNKNNHRDKVHLSRVLLA 60
MASNK+SM +K LFVV+LI+TSSQ +AFGR H +DA PH +K++ + +SRV
Sbjct: 22 MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 81
Query: 61 SQKDVPRNGNYGGGGGNPSS 79
SQ D PR GNYGG G P+S
Sbjct: 82 SQTDTPRKGNYGGRGEGPTS 101
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| A0A0A0KUB2 | 1.5e-10 | 55.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017210 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG6576807.1 | 2.4e-15 | 66.67 | hypothetical protein SDJN03_24381, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAE8649130.1 | 3.0e-10 | 55.00 | hypothetical protein Csa_014869 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 59..78 |
Relationships
The following mRNA feature(s) are a part of this gene:
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