Lcy11g002760 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy11g002760
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr11: 2559986 .. 2560533 (+)
RNA-Seq Expression	Lcy11g002760
Synteny	Lcy11g002760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGAACAAAAACTCAATGTTTTGGAAGGTTTTATTTGTTGTGATGCTCATTCTTACTTCTTCCCAATTGGCGTTTGGAAGACATTTTGCTGATGCTACTCCTCATAGATCTTGTAAGAATCACTTTTCTTCCATTCCTCAAAATGAATGTCTTTAATTCATTCAATTTAATTGAAGGATTTTTCTTTCCAATTTCCATGTTTTTCCATGCACGTTACATCACATGTTGGCTAATTTTGTTAAAAAAAAATATATTGTGATGGTATGATCTATCCAAAAAGGCCATGATAATATGATTTTTCTAGACATTAAATCTCTTCTAGTTTTGTTTGTGGGTTTTTGTCTTTCTTTCTTAAAAGATGTTTTACATAAATATAATTTCAGTATTATTTGTACTTGATCTCATACTTGTATTTGATTGCAGGTCATAACAAGAACAACCATAGGGATAAGGTGCATCTTTCAAGAGTTCTATTGGCTTCCCAAAAAGATGTCCCAAGAAACGGTAACTATGGAGGTGGAGGAGGGAACCCGTCAAGTTAA

mRNA sequence

ATGGCTTCGAACAAAAACTCAATGTTTTGGAAGGTTTTATTTGTTGTGATGCTCATTCTTACTTCTTCCCAATTGGCGTTTGGAAGACATTTTGCTGATGCTACTCCTCATAGATCTTGTCATAACAAGAACAACCATAGGGATAAGGTGCATCTTTCAAGAGTTCTATTGGCTTCCCAAAAAGATGTCCCAAGAAACGGTAACTATGGAGGTGGAGGAGGGAACCCGTCAAGTTAA

Coding sequence (CDS)

ATGGCTTCGAACAAAAACTCAATGTTTTGGAAGGTTTTATTTGTTGTGATGCTCATTCTTACTTCTTCCCAATTGGCGTTTGGAAGACATTTTGCTGATGCTACTCCTCATAGATCTTGTCATAACAAGAACAACCATAGGGATAAGGTGCATCTTTCAAGAGTTCTATTGGCTTCCCAAAAAGATGTCCCAAGAAACGGTAACTATGGAGGTGGAGGAGGGAACCCGTCAAGTTAA

Protein sequence

MASNKNSMFWKVLFVVMLILTSSQLAFGRHFADATPHRSCHNKNNHRDKVHLSRVLLASQKDVPRNGNYGGGGGNPSS

Homology

[Close]

BLAST of Lcy11g002760 vs. ExPASy TrEMBL
Match: A0A0A0KUB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017210 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-10
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 1  MASNKNSMFWKVLFVVMLILTSSQ-LAFGR-HFADATPHRSCHNKNNHRDKVHLSRVLLA 60
          MASNK+SM +K LFVV+LI+TSSQ +AFGR H +DA PH    +K++   +  +SRV   
Sbjct: 1  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 60

Query: 61 SQKDVPRNGNYGGGGGNPSS 79
          SQ D PR GNYGG G  P+S
Sbjct: 61 SQTDTPRKGNYGGRGEGPTS 80

[Close]

BLAST of Lcy11g002760 vs. NCBI nr
Match: KAG6576807.1 (hypothetical protein SDJN03_24381, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-15
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1  MASNKNSMFWKVLFVVMLILTSSQLAFGRHFADATPHRSCHNKNNHRDKVHLSRVLLASQ 60
          MASN  SM WKVLF +MLIL SS +AFGRH ADATP RS +N+NN   K  +SR LL SQ
Sbjct: 1  MASNNKSMLWKVLFAIMLILCSSHMAFGRHIADATPRRS-YNENN---KESISRALLGSQ 60

Query: 61 KDVPRNGNYGGGGGNPSS 79
           DVPR GNY  GGG PSS
Sbjct: 61 TDVPRRGNY--GGGEPSS 72

[Close]

BLAST of Lcy11g002760 vs. NCBI nr
Match: KAE8649130.1 (hypothetical protein Csa_014869 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 3.0e-10
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 1   MASNKNSMFWKVLFVVMLILTSSQ-LAFGR-HFADATPHRSCHNKNNHRDKVHLSRVLLA 60
           MASNK+SM +K LFVV+LI+TSSQ +AFGR H +DA PH    +K++   +  +SRV   
Sbjct: 22  MASNKDSMLFKALFVVILIITSSQYVAFGRLHISDAIPHYRSDHKDDREKEKTISRVEHL 81

Query: 61  SQKDVPRNGNYGGGGGNPSS 79
           SQ D PR GNYGG G  P+S
Sbjct: 82  SQTDTPRKGNYGGRGEGPTS 101

The following BLAST results are available for this feature:

BLAST of Lcy11g002760 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy11g002760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUB2	1.5e-10	55.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017210 PE=4 SV=1	[more]

BLAST of Lcy11g002760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576807.1	2.4e-15	66.67	hypothetical protein SDJN03_24381, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8649130.1	3.0e-10	55.00	hypothetical protein Csa_014869 [Cucumis sativus]	[more]

BLAST of Lcy11g002760 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy11g002760.1	Lcy11g002760.1	mRNA