Lcy11g002640 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g002640
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr11: 2434569 .. 2435756 (+)
RNA-Seq ExpressionLcy11g002640
SyntenyLcy11g002640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTCCCTCAAAATTTCCATTGTGTTGAAACTTGTAGTTTGCTTTGTTTTGCTTCTCATTGCCTCTCCCATTTTTGCAATCGACAATGCTCCTCGTATTCGTAAGTTGTCTTTTCCATTATTGTTTAATGTCTTTCATCCCACCTCCTCATTCATTTTTGTTTCATATATGTTTAGGAAGTTTGAGTTTTACATAAAGTTTGATTTTTTATAAATTTGTTTACTCTATATTTGGTTTATGAGTTTGTTATTTGAAGAATACTAAATATAGGTTATACAAATCAACAACTGTGAAATGTAAACGGTGGAAGCTTCATGCAAGTCTTTCGAAATGTATATGGAGATATGAGGAATAATAAAGAATCAACTTCAAAATTACGTTCAATATAAACATAGCTCAATTGGTTAAGACATTAGTATCTTCGACCAAAAAGTTGGAGAGGTTCGAATCTCTACCCCTACAAATTGTTGAACTCAAAGAACTTTAAAACCGTGAAAAAGAAAGGGAAAATCATGTGGTTTGAATCTCTATATCCCAAGCAAAATGAATCTTGTTATAACAATAATGTGTGGTTTTAATTTTGCTTTTTGGAAAAAACTTGGCTGCATACTGGTAGGTAGGGATCTCCCTACATACCACCATTAAAATCTTGACAACTAGGAGAGATAAAAAAGTTTTCTTATTTTCTTCCTTCCTCTTTCTTAGTTGTCAAGATTTTAATGAGATTCATACATACCGGTATGCAACCAAGTTTTGTTCTTTTGGTACTTATATCTGTTTGTATCGTCGATCGTATGTCTTTAGCAAGAGGATGGGACGTGTTAAAGCAATAAATATCATAGATCTTAGACGAGAGGTAGATCCATGTGCGAAAAAATGTGTTATTTCATAGGAGCGGAATGACCCCCTGTTCAATTTTTTTTTAGCGGTTTCCCTAGAGATCTTTATCATCAATACAACTTTCATTTTACTCATTCATGGAGTTGTTTCAGGTAAGATGGGTATGGAGTACAAAAATGTTGGGAAGGATGTGGTGGTAACAAAAGCAAAGAGACCATTGTCTGCTGATGCCCCATGGGGAGGTGGATATAACATCCCTTGATCAAGTTTCAACTGAGTTCAGCTCTGGCTTTCCCTTTGTGTTTATTGACTTTTTTTTTTGGGAGCATTAATTTTAAAGTTAAA

mRNA sequence

ATGGTGTCCCTCAAAATTTCCATTGTGTTGAAACTTGTAGTTTGCTTTGTTTTGCTTCTCATTGCCTCTCCCATTTTTGCAATCGACAATGCTCCTCGTATTCGTAAGATGGGTATGGAGTACAAAAATGTTGGGAAGGATGTGGTGGTAACAAAAGCAAAGAGACCATTGTCTGCTGATGCCCCATGGGGAGGTGGATATAACATCCCTTGATCAAGTTTCAACTGAGTTCAGCTCTGGCTTTCCCTTTGTGTTTATTGACTTTTTTTTTTGGGAGCATTAATTTTAAAGTTAAA

Coding sequence (CDS)

ATGGTGTCCCTCAAAATTTCCATTGTGTTGAAACTTGTAGTTTGCTTTGTTTTGCTTCTCATTGCCTCTCCCATTTTTGCAATCGACAATGCTCCTCGTATTCGTAAGATGGGTATGGAGTACAAAAATGTTGGGAAGGATGTGGTGGTAACAAAAGCAAAGAGACCATTGTCTGCTGATGCCCCATGGGGAGGTGGATATAACATCCCTTGA

Protein sequence

MVSLKISIVLKLVVCFVLLLIASPIFAIDNAPRIRKMGMEYKNVGKDVVVTKAKRPLSADAPWGGGYNIP
Homology
BLAST of Lcy11g002640 vs. ExPASy TrEMBL
Match: A0A6J1CHY3 (uncharacterized protein LOC111011803 OS=Momordica charantia OX=3673 GN=LOC111011803 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.3e-06
Identity = 42/74 (56.76%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 1   MVSLKISIVLKLVVCFVLLLIASPIFA----IDNAPRIRKMGMEYKNVGKDVVVTKAKRP 60
           M SL+IS VLKL   F LLLIAS + A    I   PRIRK+GMEY++VGK V+  KA   
Sbjct: 42  MASLRISFVLKLFF-FALLLIASRVSASTPSIHKRPRIRKLGMEYRSVGKAVLRAKA--- 101

Query: 61  LSADAPWGGGYNIP 71
            S D PW GGYN P
Sbjct: 102 ASYDFPWKGGYNPP 111

BLAST of Lcy11g002640 vs. ExPASy TrEMBL
Match: A0A5D3DJ60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00330 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 36/70 (51.43%), Postives = 42/70 (60.00%), Query Frame = 0

Query: 4  LKISIVLKLVVCFVLLLIASPIFAIDN------APRIRKMGMEYKNVGKDVVVTKAKRPL 63
          +KIS++LKL+    LL IAS   +  N       P IRKMG+EYK   K VVV K  RP 
Sbjct: 6  MKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPKVNRPT 65

Query: 64 SADAPWGGGY 68
          S D PWGGGY
Sbjct: 66 SDDVPWGGGY 75

BLAST of Lcy11g002640 vs. NCBI nr
Match: KAG6600177.1 (hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 3.5e-18
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 1  MVSLK-ISIVLKLVVCFVLLLIASPIFAIDNAPRIRKMGMEYKNVGKDVVVTKAKRPLSA 60
          MVSLK IS VLKL+VCF LLLIASPI A+DN PRIRKMGMEYK VGK VVV K  R LSA
Sbjct: 1  MVSLKMISFVLKLLVCFALLLIASPISAMDNTPRIRKMGMEYKLVGKAVVVAKPVRQLSA 60

Query: 61 DAPWGGGYNIP 71
          D+PWGGGY+IP
Sbjct: 61 DSPWGGGYHIP 71

BLAST of Lcy11g002640 vs. NCBI nr
Match: KAG7030840.1 (hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 12  LVVCFVLLLIASPIFAIDNAPRIRKMGMEYKNVGKDVVVTKAKRPLSADAPWGGGYNIP 71
           L+VCF LLLIASPI A+DN PRIRKMGMEYK VGK VVV K  R LSAD+PWGGGY+IP
Sbjct: 251 LLVCFALLLIASPISAMDNTPRIRKMGMEYKLVGKAVVVAKPVRQLSADSPWGGGYHIP 309

BLAST of Lcy11g002640 vs. NCBI nr
Match: XP_022141390.1 (uncharacterized protein LOC111011803 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-06
Identity = 42/74 (56.76%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 1   MVSLKISIVLKLVVCFVLLLIASPIFA----IDNAPRIRKMGMEYKNVGKDVVVTKAKRP 60
           M SL+IS VLKL   F LLLIAS + A    I   PRIRK+GMEY++VGK V+  KA   
Sbjct: 42  MASLRISFVLKLFF-FALLLIASRVSASTPSIHKRPRIRKLGMEYRSVGKAVLRAKA--- 101

Query: 61  LSADAPWGGGYNIP 71
            S D PW GGYN P
Sbjct: 102 ASYDFPWKGGYNPP 111

BLAST of Lcy11g002640 vs. NCBI nr
Match: KAA0067663.1 (hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667.1 hypothetical protein E5676_scaffold577G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-05
Identity = 36/70 (51.43%), Postives = 42/70 (60.00%), Query Frame = 0

Query: 4  LKISIVLKLVVCFVLLLIASPIFAIDN------APRIRKMGMEYKNVGKDVVVTKAKRPL 63
          +KIS++LKL+    LL IAS   +  N       P IRKMG+EYK   K VVV K  RP 
Sbjct: 6  MKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPKVNRPT 65

Query: 64 SADAPWGGGY 68
          S D PWGGGY
Sbjct: 66 SDDVPWGGGY 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CHY33.3e-0656.76uncharacterized protein LOC111011803 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A5D3DJ601.6e-0551.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAG6600177.13.5e-1878.87hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030840.11.2e-1577.97hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022141390.16.9e-0656.76uncharacterized protein LOC111011803 [Momordica charantia][more]
KAA0067663.13.4e-0551.43hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g002640.1Lcy11g002640.1mRNA