Lcy11g001610 (gene) Sponge gourd (P93075) v1

Overview
NameLcy11g001610
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionheavy metal-associated isoprenylated plant protein 39-like
LocationChr11: 1638336 .. 1638605 (+)
RNA-Seq ExpressionLcy11g001610
SyntenyLcy11g001610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATCACAAATCAAAGAAGAAAGCCATAGAAGCAGCTGCTGACATATTTGGTCCCTGAAGTCATTTCTCTTTTCTTTTTGGTCCTTTTCTATTTCTATCAAATTTGGGAATTTTAATGTGATTTTGATCAACAGGGGTTGACTCCATTGCAGCAGATCTGAAGGAGCAGACAGTAACAGTCATAGGATCAATGGATGTAGTTTGCACTGGTCAAGAAGAGGAAGAAAGTTGGGAAAGTGGAAATTGTTTCCATTGGTCTAGCTAA

mRNA sequence

ATGGCTGATCACAAATCAAAGAAGAAAGCCATAGAAGCAGCTGCTGACATATTTGGGGTTGACTCCATTGCAGCAGATCTGAAGGAGCAGACAGTAACAGTCATAGGATCAATGGATGTAGTTTGCACTGGTCAAGAAGAGGAAGAAAGTTGGGAAAGTGGAAATTGTTTCCATTGGTCTAGCTAA

Coding sequence (CDS)

ATGGCTGATCACAAATCAAAGAAGAAAGCCATAGAAGCAGCTGCTGACATATTTGGGGTTGACTCCATTGCAGCAGATCTGAAGGAGCAGACAGTAACAGTCATAGGATCAATGGATGTAGTTTGCACTGGTCAAGAAGAGGAAGAAAGTTGGGAAAGTGGAAATTGTTTCCATTGGTCTAGCTAA

Protein sequence

MADHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVVCTGQEEEESWESGNCFHWSS
Homology
BLAST of Lcy11g001610 vs. ExPASy TrEMBL
Match: A0A6A2YQ20 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111330pilonHSYRG01007 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 1  MADHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVV 42
          +AD K+KKKAIEAAADI+GVDSIAADLKEQ +TVIG MD V
Sbjct: 13 IADEKTKKKAIEAAADIYGVDSIAADLKEQKLTVIGQMDAV 53

BLAST of Lcy11g001610 vs. ExPASy TrEMBL
Match: A0A6D2I4I7 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10637 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 1  MADHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVV 42
          M D K+K+KAIEAAADIFGVDSIAAD+KEQ +TVIGSMD V
Sbjct: 12 MTDDKTKQKAIEAAADIFGVDSIAADMKEQKLTVIGSMDAV 52

BLAST of Lcy11g001610 vs. ExPASy TrEMBL
Match: A0A0K9RYD0 (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_019630 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 1  MADHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVV 42
          M D K+KKKAIEAAADIFGVDSIAAD+KEQ +TVIG MD V
Sbjct: 12 MTDEKTKKKAIEAAADIFGVDSIAADIKEQKLTVIGLMDAV 52

BLAST of Lcy11g001610 vs. ExPASy TrEMBL
Match: A0A6J1H124 (heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111459098 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 1  MADHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVV 42
          M D KSK+KAIEAAADI+GVDSIAADLK+Q +TV+GSMD V
Sbjct: 12 MTDDKSKQKAIEAAADIYGVDSIAADLKDQKLTVVGSMDAV 52

BLAST of Lcy11g001610 vs. ExPASy TrEMBL
Match: A0A5P1EJ21 (HMA domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F21780 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0

Query: 1  MADHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVVCTGQE 47
          M D K+K+KAIEAAAD++GVDSIAADLKEQ VTVIG MD V   ++
Sbjct: 28 MNDEKTKQKAIEAAADVYGVDSIAADLKEQRVTVIGEMDAVAVAKK 73

BLAST of Lcy11g001610 vs. NCBI nr
Match: XP_028065528.1 (heavy metal-associated isoprenylated plant protein 39-like [Camellia sinensis] >XP_028065529.1 heavy metal-associated isoprenylated plant protein 39-like [Camellia sinensis] >XP_028119433.1 heavy metal-associated isoprenylated plant protein 39-like [Camellia sinensis] >XP_028119434.1 heavy metal-associated isoprenylated plant protein 39-like [Camellia sinensis])

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 1  MADHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVV 42
          M D K+KKKAIEAAADIFGVDSIAADLKEQ +TVIG MD V
Sbjct: 12 MTDEKTKKKAIEAAADIFGVDSIAADLKEQKLTVIGEMDTV 52

BLAST of Lcy11g001610 vs. NCBI nr
Match: KAE8681471.1 (hypothetical protein F3Y22_tig00111330pilonHSYRG01007 [Hibiscus syriacus])

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 1  MADHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVV 42
          +AD K+KKKAIEAAADI+GVDSIAADLKEQ +TVIG MD V
Sbjct: 13 IADEKTKKKAIEAAADIYGVDSIAADLKEQKLTVIGQMDAV 53

BLAST of Lcy11g001610 vs. NCBI nr
Match: XP_039025477.1 (heavy metal-associated isoprenylated plant protein 39-like [Hibiscus syriacus])

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 1   MADHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVV 42
           +AD K+KKKAIEAAADI+GVDSIAADLKEQ +TVIG MD V
Sbjct: 69  IADEKTKKKAIEAAADIYGVDSIAADLKEQKLTVIGQMDAV 109

BLAST of Lcy11g001610 vs. NCBI nr
Match: CAA7023402.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 1  MADHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVV 42
          M D K+K+KAIEAAADIFGVDSIAAD+KEQ +TVIGSMD V
Sbjct: 12 MTDDKTKQKAIEAAADIFGVDSIAADMKEQKLTVIGSMDAV 52

BLAST of Lcy11g001610 vs. NCBI nr
Match: XP_027364908.1 (heavy metal-associated isoprenylated plant protein 39-like isoform X1 [Abrus precatorius])

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-07
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 1  MADHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVV 42
          M D K+KKKAIEAAADIFGVDSIAAD+KEQ +TVIG MD V
Sbjct: 13 MVDDKTKKKAIEAAADIFGVDSIAADVKEQKLTVIGQMDTV 53

BLAST of Lcy11g001610 vs. TAIR 10
Match: AT5G23760.1 (Copper transport protein family )

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-10
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 1  MADHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVV 42
          M D K+K+KAIEAAADIFGVDSIAAD+K+Q +TVIG MD V
Sbjct: 12 MTDDKTKQKAIEAAADIFGVDSIAADMKDQKLTVIGLMDAV 52

BLAST of Lcy11g001610 vs. TAIR 10
Match: AT1G01490.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 40.4 bits (93), Expect = 6.0e-04
Identity = 19/49 (38.78%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 3  DHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVVCTGQEEEESW 52
          D ++K+KA++  + + G+DSIA D+KE+ +TVIG++D V    +  + W
Sbjct: 12 DDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYW 60

BLAST of Lcy11g001610 vs. TAIR 10
Match: AT1G01490.2 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 40.4 bits (93), Expect = 6.0e-04
Identity = 19/49 (38.78%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 3  DHKSKKKAIEAAADIFGVDSIAADLKEQTVTVIGSMDVVCTGQEEEESW 52
          D ++K+KA++  + + G+DSIA D+KE+ +TVIG++D V    +  + W
Sbjct: 12 DDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYW 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6A2YQ201.5e-0780.49Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111330pilon... [more]
A0A6D2I4I71.5e-0780.49Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10637 ... [more]
A0A0K9RYD02.0e-0780.49Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_019630 PE=4 SV=1[more]
A0A6J1H1242.6e-0778.05heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita moschata... [more]
A0A5P1EJ212.6e-0769.57HMA domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F2178... [more]
Match NameE-valueIdentityDescription
XP_028065528.11.4e-0782.93heavy metal-associated isoprenylated plant protein 39-like [Camellia sinensis] >... [more]
KAE8681471.13.2e-0780.49hypothetical protein F3Y22_tig00111330pilonHSYRG01007 [Hibiscus syriacus][more]
XP_039025477.13.2e-0780.49heavy metal-associated isoprenylated plant protein 39-like [Hibiscus syriacus][more]
CAA7023402.13.2e-0780.49unnamed protein product [Microthlaspi erraticum][more]
XP_027364908.14.1e-0780.49heavy metal-associated isoprenylated plant protein 39-like isoform X1 [Abrus pre... [more]
Match NameE-valueIdentityDescription
AT5G23760.13.3e-1075.61Copper transport protein family [more]
AT1G01490.16.0e-0438.78Heavy metal transport/detoxification superfamily protein [more]
AT1G01490.26.0e-0438.78Heavy metal transport/detoxification superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.100coord: 1..50
e-value: 1.1E-8
score: 37.0
NoneNo IPR availablePANTHERPTHR45811:SF43PROTEIN PXR1-LIKE ISOFORM X1coord: 1..42
NoneNo IPR availablePANTHERPTHR45811COPPER TRANSPORT PROTEIN FAMILY-RELATEDcoord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy11g001610.1Lcy11g001610.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding