Lcy10g016360 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g016360
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionglyoxylate/hydroxypyruvate reductase HPR3-like
LocationChr10: 44564469 .. 44565736 (+)
RNA-Seq ExpressionLcy10g016360
SyntenyLcy10g016360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCGAAGGCCAGGCCAACGAGCTTCCTCAAGTGTTAGTTCTAGGTCCCCCCTTGGTTTTCTCATTTCTGGAATCCCAATTCCCAAACAGATTCCATTTCCTCAAACCCTGGCTTTCCGAACTCCCTCTAACCCAATTCCTCACCTCTTATGCCCAATCCGCCCGAGCCTTGCTTATCCGAGGCGGTGGCACTGTCGAACTCACCTCCGCCATTCTCGATTTCCTCCCCTCGCTCAAGCTCGTCGTCACTTCCAGCGTCGGTGTCGAACACTTGGACTTGCCGGAATTACGCCGGCGTGGGGTGGCCATTGCCTATGCAGGAAACTTGTTCTCTCAAGATGTCGCCGATATGGCGGTTGGATTACTGATCGATGTCCTTAGAAAAGTGTCGGCGGGAGACCGATTCGTGAGGCAAGGGCTTTGGCCTACGAAAGGGAGTTTTCCTCTCGGATTAAAGGTCCAATGGTTGTTCTTTATCTAATTGCTATTTCCTCTCGTTATTGTTCATTTCCAATCACCTCAGTAACAAAAGATATAACAAAAGATATGACAGATTTTGATGATTTGTCAAGCAATGGCTAATAAGTGTAGTTGAATTTGGATGTTCTAAGATTGATGGATTTGAAGGTTAAAATTTTTTGCAGTTGAGCGGCAAGCGAATTGGGATTGTTGGATTGGGGAGAATAGGCTCTGAAGTTGCCAAAAGGCTGGAGGGTTTTGACTGCAGAATCTCATATAACTCAAGGACCAAGAAGTCATTAGTACCATATTCCTACTATTCCAATGTATATGAACTCGCAGCAAACTGTGAAGCACTCATCATTTGTTGTGGGTTAACTGAAGAGACCCGCCATTTAATTAACAGGGAGGTGATGCTTGCATTAGGAAAAGATGGAGTTATAATCAATATTGGTCGAGGGGCGATCATCGATGAGAAAGAGATGATTCGATGTTTGATTCAGAGGGAGATTGGGGGTGCTGGGCTGGATGTGTTTGAGAATGAACCTGAAATTTCCGAACAGTTCTTTACTCTTGGGAATGTTGTGTTGTCACCCCATGCTGCTGTCTCAACCTATGAATCTAGCGAGGAGTTGTGTAAGTTGGTGGTGGACAACTTGGAGGCATTCTTCTCAAACAAACCTTTGGTGTCTCCCTTTCTTAATTAGTTGTGGTGCAGCTGAATTTCTGCTGGGGGAGGCTGGTTTGTTCATTGTTGGAAAGAACAGGAGAGACTCCAAAATCTCGACAACAGAGCCACCCTAA

mRNA sequence

ATGGCAACCGAAGGCCAGGCCAACGAGCTTCCTCAAGTGTTAGTTCTAGGTCCCCCCTTGGTTTTCTCATTTCTGGAATCCCAATTCCCAAACAGATTCCATTTCCTCAAACCCTGGCTTTCCGAACTCCCTCTAACCCAATTCCTCACCTCTTATGCCCAATCCGCCCGAGCCTTGCTTATCCGAGGCGCTGAATTTCTGCTGGGGGAGGCTGGTTTGTTCATTGTTGGAAAGAACAGGAGAGACTCCAAAATCTCGACAACAGAGCCACCCTAA

Coding sequence (CDS)

ATGGCAACCGAAGGCCAGGCCAACGAGCTTCCTCAAGTGTTAGTTCTAGGTCCCCCCTTGGTTTTCTCATTTCTGGAATCCCAATTCCCAAACAGATTCCATTTCCTCAAACCCTGGCTTTCCGAACTCCCTCTAACCCAATTCCTCACCTCTTATGCCCAATCCGCCCGAGCCTTGCTTATCCGAGGCGCTGAATTTCTGCTGGGGGAGGCTGGTTTGTTCATTGTTGGAAAGAACAGGAGAGACTCCAAAATCTCGACAACAGAGCCACCCTAA

Protein sequence

MATEGQANELPQVLVLGPPLVFSFLESQFPNRFHFLKPWLSELPLTQFLTSYAQSARALLIRGAEFLLGEAGLFIVGKNRRDSKISTTEPP
Homology
[Close]
BLAST of Lcy10g016360 vs. ExPASy TrEMBL
Match: A0A6J1EEZ0 (glyoxylate/hydroxypyruvate reductase HPR3-like OS=Cucurbita moschata OX=3662 GN=LOC111431925 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.7e-21
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 1  MATEGQANELPQVLVLGPPLVFSFLESQFPNRFHFLKPWLSELPLTQFLTSYAQSARALL 60
          M  E QANELPQVLVLGPP VF +LESQFPNRFHFLKPWLS LPLTQFL SYAQSA ALL
Sbjct: 1  MGPEDQANELPQVLVLGPPPVFPYLESQFPNRFHFLKPWLSNLPLTQFLISYAQSATALL 60

Query: 61 IRG 64
          IRG
Sbjct: 61 IRG 63

[Close]
BLAST of Lcy10g016360 vs. ExPASy TrEMBL
Match: A0A6J1D1V9 (glyoxylate/hydroxypyruvate reductase HPR3-like OS=Momordica charantia OX=3673 GN=LOC111016253 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.6e-19
Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = 0 

Query: 1  MATEGQANELPQVLVLGPPLVFSFLESQFPNRFHFLKPWLSELPLTQFLTSYAQSARALL 60
          MA E Q  +LPQVLVLGPP VFS LESQFPNRFHFLKPWLS+LPL QFLTSYAQ  +AL+
Sbjct: 1  MAPESQDQDLPQVLVLGPPTVFSCLESQFPNRFHFLKPWLSKLPLPQFLTSYAQYVQALI 60

Query: 61 IRGAEFLLGEA 72
          I G    L  A
Sbjct: 61 IPGGSLALTSA 71

[Close]
BLAST of Lcy10g016360 vs. ExPASy TrEMBL
Match: A0A0A0L908 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G124900 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 1  MATEGQANELPQVLVLGPPLVFSFLESQFPNRFHFLKPWLSELPLTQFLTSYAQSARALL 60
          MA EG++ ELP+VLVLGPP VFS LESQFPN+FH+LKPWLS+LPL QFLTSYAQS +ALL
Sbjct: 1  MAMEGESKELPEVLVLGPPWVFSTLESQFPNKFHYLKPWLSQLPLHQFLTSYAQSTQALL 60

Query: 61 I 62
          I
Sbjct: 61 I 61

[Close]
BLAST of Lcy10g016360 vs. ExPASy TrEMBL
Match: A0A0A0L7K6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G124910 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.8e-18
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 1  MATEGQANELPQVLVLGPPLVFSFLESQFPNRFHFLKPWLSELPLTQFLTSYAQSARALL 60
          MA E QA ELPQ+L+LGPP +F +LESQF NRF FLKPWL  LPLTQFLTSYAQS +ALL
Sbjct: 1  MAAEEQAKELPQILILGPPSIFPYLESQFSNRFLFLKPWLYNLPLTQFLTSYAQSTQALL 60

Query: 61 IRG 64
          IRG
Sbjct: 61 IRG 63

[Close]
BLAST of Lcy10g016360 vs. ExPASy TrEMBL
Match: A0A6J1E270 (glyoxylate/hydroxypyruvate reductase HPR3-like OS=Momordica charantia OX=3673 GN=LOC111025776 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-17
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 6  QANELPQVLVLGPPLVFSFLESQFPNRFHFLKPWLSELPLTQFLTSYAQSARALLIR 63
          +A  LPQVLV+GPP +FS LESQFPNRFHFLKPWLS+LPL QFLTSYAQS +ALLIR
Sbjct: 4  EAEHLPQVLVIGPPGIFSLLESQFPNRFHFLKPWLSQLPLLQFLTSYAQSTQALLIR 60

[Close]
BLAST of Lcy10g016360 vs. NCBI nr
Match: XP_022924420.1 (glyoxylate/hydroxypyruvate reductase HPR3-like [Cucurbita moschata] >KAG6582577.1 Glyoxylate/hydroxypyruvate reductase HPR3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.2 bits (274), Expect = 9.8e-21
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 1  MATEGQANELPQVLVLGPPLVFSFLESQFPNRFHFLKPWLSELPLTQFLTSYAQSARALL 60
          M  E QANELPQVLVLGPP VF +LESQFPNRFHFLKPWLS LPLTQFL SYAQSA ALL
Sbjct: 1  MGPEDQANELPQVLVLGPPPVFPYLESQFPNRFHFLKPWLSNLPLTQFLISYAQSATALL 60

Query: 61 IRG 64
          IRG
Sbjct: 61 IRG 63

[Close]
BLAST of Lcy10g016360 vs. NCBI nr
Match: XP_023526607.1 (glyoxylate/hydroxypyruvate reductase HPR3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-20
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 1  MATEGQANELPQVLVLGPPLVFSFLESQFPNRFHFLKPWLSELPLTQFLTSYAQSARALL 60
          M  E QAN+LPQVLVLGPP VF +LESQFPNRFHFLKPWLS LPLTQFL SYAQSA ALL
Sbjct: 1  MGPEDQANQLPQVLVLGPPPVFPYLESQFPNRFHFLKPWLSHLPLTQFLISYAQSATALL 60

Query: 61 IRG 64
          IRG
Sbjct: 61 IRG 63

[Close]
BLAST of Lcy10g016360 vs. NCBI nr
Match: XP_038902451.1 (glyoxylate/hydroxypyruvate reductase HPR3-like [Benincasa hispida])

HSP 1 Score: 103.6 bits (257), Expect = 9.2e-19
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 1  MATEGQA-NELPQVLVLGPPLVFSFLESQFPNRFHFLKPWLSELPLTQFLTSYAQSARAL 60
          MATE QA +ELPQVLVLGPPL+F +LESQF NRFHFLKPWLS L LTQFLTSY QS +AL
Sbjct: 1  MATEDQAKDELPQVLVLGPPLIFPYLESQFTNRFHFLKPWLSNLSLTQFLTSYTQSTQAL 60

Query: 61 LIRG 64
          LIRG
Sbjct: 61 LIRG 64

[Close]
BLAST of Lcy10g016360 vs. NCBI nr
Match: XP_022147257.1 (glyoxylate/hydroxypyruvate reductase HPR3-like [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = 0 

Query: 1  MATEGQANELPQVLVLGPPLVFSFLESQFPNRFHFLKPWLSELPLTQFLTSYAQSARALL 60
          MA E Q  +LPQVLVLGPP VFS LESQFPNRFHFLKPWLS+LPL QFLTSYAQ  +AL+
Sbjct: 1  MAPESQDQDLPQVLVLGPPTVFSCLESQFPNRFHFLKPWLSKLPLPQFLTSYAQYVQALI 60

Query: 61 IRGAEFLLGEA 72
          I G    L  A
Sbjct: 61 IPGGSLALTSA 71

[Close]
BLAST of Lcy10g016360 vs. NCBI nr
Match: XP_004134340.1 (glyoxylate/hydroxypyruvate reductase HPR3 [Cucumis sativus] >KGN56571.1 hypothetical protein Csa_011633 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 2.7e-18
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 0 

Query: 1  MATEGQANELPQVLVLGPPLVFSFLESQFPNRFHFLKPWLSELPLTQFLTSYAQSARALL 60
          MA EG++ ELP+VLVLGPP VFS LESQFPN+FH+LKPWLS+LPL QFLTSYAQS +ALL
Sbjct: 1  MAMEGESKELPEVLVLGPPWVFSTLESQFPNKFHYLKPWLSQLPLHQFLTSYAQSTQALL 60

Query: 61 I 62
          I
Sbjct: 61 I 61

The following BLAST results are available for this feature:
BLAST of Lcy10g016360 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g016360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EEZ04.7e-2185.71glyoxylate/hydroxypyruvate reductase HPR3-like OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1D1V97.6e-1971.83glyoxylate/hydroxypyruvate reductase HPR3-like OS=Momordica charantia OX=3673 GN... [more]
A0A0A0L9081.3e-1878.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G124900 PE=3 SV=1[more]
A0A0A0L7K63.8e-1876.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G124910 PE=3 SV=1[more]
A0A6J1E2701.9e-1780.70glyoxylate/hydroxypyruvate reductase HPR3-like OS=Momordica charantia OX=3673 GN... [more]
BLAST of Lcy10g016360 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022924420.19.8e-2185.71glyoxylate/hydroxypyruvate reductase HPR3-like [Cucurbita moschata] >KAG6582577.... [more]
XP_023526607.12.2e-2084.13glyoxylate/hydroxypyruvate reductase HPR3-like [Cucurbita pepo subsp. pepo][more]
XP_038902451.19.2e-1981.25glyoxylate/hydroxypyruvate reductase HPR3-like [Benincasa hispida][more]
XP_022147257.11.6e-1871.83glyoxylate/hydroxypyruvate reductase HPR3-like [Momordica charantia][more]
XP_004134340.12.7e-1878.69glyoxylate/hydroxypyruvate reductase HPR3 [Cucumis sativus] >KGN56571.1 hypothet... [more]
BLAST of Lcy10g016360 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g016360.1Lcy10g016360.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005829 cytosol
molecular_function GO:0030267 glyoxylate reductase (NADP+) activity
molecular_function GO:0016618 hydroxypyruvate reductase activity
molecular_function GO:0051287 NAD binding