Lcy10g015090 (gene) Sponge gourd (P93075) v1

Overview
NameLcy10g015090
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr10: 43320125 .. 43321254 (-)
RNA-Seq ExpressionLcy10g015090
SyntenyLcy10g015090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGTTGGACCTGTTCTATCCAATAAACATGCAGGTTATTCGGGGTGATTGTCATTGGAGGTTTGTCGGGTTGATTTTCTCTTGTTTACACGAAGGTATGCTCTTGCAGTGGGAAGTTATTAACAGCGAGCATCCATTTAAGTCCTGGATTTACACGATGATTAGTATATTTTGGAATATCTTATACTTTTTTTACGCAGTACAATTTGCTGTGGTGCTGTTGTCTTCTTCCCTCATATCTCTTCTTTCTTCTTTTTTTCTTTTTTTCTTTCTTTTCTTTTTTCTTTTTTTTTTTTCCTCCAATCTCCAAAATTTTATTTTCGTTAGGCAAAGCTACTACTGTTAAAGGTTGGTCGAAACCAGATGTTGCTGGGATAAATTGCATCAAAATTTCATCCTTCTGGGTATGATCAGAATGGCTGACTCAATTGGAAGCTTTTTTATTCGTGGTGAATGCAAATATATATATAACAGGTAATATTGTATGTAACTGCTTGGTTGAAGGTGTTTATAGGGAAAATATATGTCAACTTATTTGATTAGATTCTTGAGATCCTAGGTTTGGATTCTATTATTTTGGTGGATTTATTTTTAAAAAATAAAATAGACGAGGGCCGTATATATCCAAGTGAACCTTTACTCATGATTCGGTCTTCTTTGAGGAGCTCGAAAAGTGCATGTTGGACGATGAGCCTGTGATGACACTCAATGCATGTCTATAAGTTTTCTTTTCCTTTAATGATAAACTTCTTTTTGTAGCACACAAAATTGTGGGTGGATTGTTTGTGGGAGAATATTAGCATAAGCTGTACAATTTTTTTTTTAATCTGATGATTGCTGGTTGTAGTGTACTATTAAGATATTGGTTGGGTAAAAACTTAATTGTTTAGTCTTTTTCTCTGTTGTTTGTTCTTTTCTCCCCTCCCTCTCCCCATTTCTCCTCTCTCCTTTTCAAATAATTTCTTGCTAGGATAACCTGCAAAATGATGGAATGAGAGCTGCAGCCTTTGGTTCCGAACTCGGGTTCCAACTTGGATGAGGTGGATGTCAATGTCTTAGTTCGTGCTCGGTCTATTGTTTCTGAAGGAACCGAGCACCGAGCTATAGTGTTGAACCTCACAGCTTGA

mRNA sequence

ATGGGCGTTGGACCTGTTCTATCCAATAAACATGCAGGCAAAGCTACTACTGTTAAAGGTTGGTCGAAACCAGATGTTGCTGGGATAAATTGCATCAAAATTTCATCCTTCTGGCCTTTGGTTCCGAACTCGGGTTCCAACTTGGATGAGGTGGATGTCAATGTCTTAGTTCGTGCTCGGTCTATTGTTTCTGAAGGAACCGAGCACCGAGCTATAGTGTTGAACCTCACAGCTTGA

Coding sequence (CDS)

ATGGGCGTTGGACCTGTTCTATCCAATAAACATGCAGGCAAAGCTACTACTGTTAAAGGTTGGTCGAAACCAGATGTTGCTGGGATAAATTGCATCAAAATTTCATCCTTCTGGCCTTTGGTTCCGAACTCGGGTTCCAACTTGGATGAGGTGGATGTCAATGTCTTAGTTCGTGCTCGGTCTATTGTTTCTGAAGGAACCGAGCACCGAGCTATAGTGTTGAACCTCACAGCTTGA

Protein sequence

MGVGPVLSNKHAGKATTVKGWSKPDVAGINCIKISSFWPLVPNSGSNLDEVDVNVLVRARSIVSEGTEHRAIVLNLTA
Homology
[Close]
BLAST of Lcy10g015090 vs. NCBI nr
Match: KAG6582486.1 (hypothetical protein SDJN03_22488, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-16
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 0 

Query: 4   GPVLSNKHAGKATTVKGWSKPDVAGINCIKISSFWPLVPNSGSNLDEVDVNVLVRARSIV 63
           G + S  H GKA TVKG  KPDVAGINCIKISSFWPL+ NSGS+LDEVD + L+RARSIV
Sbjct: 59  GLIFSCLHEGKA-TVKGRLKPDVAGINCIKISSFWPLILNSGSDLDEVDDDALLRARSIV 118

Query: 64  SEGTEHR 71
           SEGTE++
Sbjct: 119 SEGTENQ 124

[Close]
BLAST of Lcy10g015090 vs. NCBI nr
Match: KAG6597275.1 (hypothetical protein SDJN03_10455, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 29/32 (90.62%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 47  NLDEVDVNVLVRARSIVSEGTEHRAIVLNLTA 79
           +LDEVDV+VLVRARSIVSEGTEHRA+VLNLTA
Sbjct: 598 SLDEVDVHVLVRARSIVSEGTEHRALVLNLTA 629

The following BLAST results are available for this feature:
BLAST of Lcy10g015090 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g015090 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy10g015090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6582486.12.8e-1673.13hypothetical protein SDJN03_22488, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6597275.13.8e-0590.63hypothetical protein SDJN03_10455, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy10g015090 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy10g015090.1Lcy10g015090.1mRNA