Lcy10g014020 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy10g014020
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4
Location	Chr10: 42174131 .. 42174758 (+)
RNA-Seq Expression	Lcy10g014020
Synteny	Lcy10g014020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCACTTGAACAACTCAACTACAAAAGCGACACCGACCAGCAAAACGTCGCCGTGCGATCTGCACCATCTTCTTCAACCTCGACTCTCAGCCGCTACGAGAACCAAAAACGCCGCGACTGGAACACGTTCGGCCACTACATAAGCAACCACCGCCCACCGCTGCCTTTGGCTCGGTGCAGTGGCGCGCACGTGGTCGAGTTCCTCCGCTACCTGGACCAGTTCGGCAAGACCAAGATCCACTCCCACCTCTGCCCTTTCTTCGGCCACCCGAGCCCATCAGGGCCCTGCACCTGCCCGTTGCGGCAAGCCTGGGGCAGCCTCGACGCGCTCGTGGGGCGCCTTCGGGCGGCCTACGAGGAGCACGGTGGGAAGGCTGACACGAACCCGTTTGCGGCTCGGGCTGTGCGGTTGTATTTGTGCGAGGTGCGAGAGTTGCAGGCTAAGGCTAGAGGGATTAGCTACGAGAAGAAGAAGCGGAAGCGGCAGTTGGGTCCGTTGCCGCCGCCGCCGCCGCCGCCGCATGCTCAGATGTGTGGCCCCACTACAGGTACAGGTAGTAGTGCAAGTGTTATAAGCCAGTTGAAGCTATAATTACTTACTCGAGTTTAATTTTATGTATAAG

mRNA sequence

ATGGATTCACTTGAACAACTCAACTACAAAAGCGACACCGACCAGCAAAACGTCGCCGTGCGATCTGCACCATCTTCTTCAACCTCGACTCTCAGCCGCTACGAGAACCAAAAACGCCGCGACTGGAACACGTTCGGCCACTACATAAGCAACCACCGCCCACCGCTGCCTTTGGCTCGGTGCAGTGGCGCGCACGTGGTCGAGTTCCTCCGCTACCTGGACCAGTTCGGCAAGACCAAGATCCACTCCCACCTCTGCCCTTTCTTCGGCCACCCGAGCCCATCAGGGCCCTGCACCTGCCCGTTGCGGCAAGCCTGGGGCAGCCTCGACGCGCTCGTGGGGCGCCTTCGGGCGGCCTACGAGGAGCACGGTGGGAAGGCTGACACGAACCCGTTTGCGGCTCGGGCTGTGCGGTTGTATTTGTGCGAGGTGCGAGAGTTGCAGGCTAAGGCTAGAGGGATTAGCTACGAGAAGAAGAAGCGGAAGCGGCAGTTGGGTCCGTTGCCGCCGCCGCCGCCGCCGCCGCATGCTCAGATGTGTGGCCCCACTACAGGTACAGGTAGTAGTGCAAGTGTTATAAGCCAGTTGAAGCTATAATTACTTACTCGAGTTTAATTTTATGTATAAG

Coding sequence (CDS)

ATGGATTCACTTGAACAACTCAACTACAAAAGCGACACCGACCAGCAAAACGTCGCCGTGCGATCTGCACCATCTTCTTCAACCTCGACTCTCAGCCGCTACGAGAACCAAAAACGCCGCGACTGGAACACGTTCGGCCACTACATAAGCAACCACCGCCCACCGCTGCCTTTGGCTCGGTGCAGTGGCGCGCACGTGGTCGAGTTCCTCCGCTACCTGGACCAGTTCGGCAAGACCAAGATCCACTCCCACCTCTGCCCTTTCTTCGGCCACCCGAGCCCATCAGGGCCCTGCACCTGCCCGTTGCGGCAAGCCTGGGGCAGCCTCGACGCGCTCGTGGGGCGCCTTCGGGCGGCCTACGAGGAGCACGGTGGGAAGGCTGACACGAACCCGTTTGCGGCTCGGGCTGTGCGGTTGTATTTGTGCGAGGTGCGAGAGTTGCAGGCTAAGGCTAGAGGGATTAGCTACGAGAAGAAGAAGCGGAAGCGGCAGTTGGGTCCGTTGCCGCCGCCGCCGCCGCCGCCGCATGCTCAGATGTGTGGCCCCACTACAGGTACAGGTAGTAGTGCAAGTGTTATAAGCCAGTTGAAGCTATAA

Protein sequence

MDSLEQLNYKSDTDQQNVAVRSAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKTKIHSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAVRLYLCEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQMCGPTTGTGSSASVISQLKL

Homology

[Close]

BLAST of Lcy10g014020 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-67
Identity = 119/152 (78.29%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 22  SAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKTKI 81
           S+  S T+ LSRYENQKRRDWNTFG Y+ NHRPPL L+RCSGAHV+EFLRYLDQFGKTK+
Sbjct: 37  SSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 96

Query: 82  HSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAVRLYL 141
           H+HLCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG  +TNPF ARAVRLYL
Sbjct: 97  HTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYL 156

Query: 142 CEVRELQAKARGISYEKKKRKRQLGPLPPPPP 174
            EVR+ QAKARGISYEKKKRKR   PLPP  P
Sbjct: 157 REVRDSQAKARGISYEKKKRKRPPPPLPPAQP 188

[Close]

BLAST of Lcy10g014020 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.3e-64
Identity = 115/173 (66.47%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 22  SAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKTKI 81
           S+ SS ++  SRYENQKRRDWNTFG Y+ NHRPPL L+RCSGAHV+EFLRYLDQFGKTK+
Sbjct: 43  SSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 102

Query: 82  HSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAVRLYL 141
           H+++C F+GHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GGK +TNPF ARAVRLYL
Sbjct: 103 HTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYL 162

Query: 142 CEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQMCGPTTGTGSSASVIS 195
            EVR++Q+KARG+SYEKKKRKR L                P++ T SS++V S
Sbjct: 163 REVRDMQSKARGVSYEKKKRKRPL----------------PSSSTSSSSAVAS 199

[Close]

BLAST of Lcy10g014020 vs. ExPASy Swiss-Prot
Match: B8AH02 (Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 6.2e-63
Identity = 115/164 (70.12%), Postives = 132/164 (80.49%), Query Frame = 0


Query: 25  SSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKTKIHSH 84
           +++  T SRYE QKRRDWNTFG Y+ NHRPPL LA+CSGAHV+EFLRYLDQFGKTK+H+ 
Sbjct: 65  AATPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRYLDQFGKTKVHTA 124

Query: 85  LCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAVRLYLCEV 144
            CPFFGHP+P  PC CPLRQAWGSLDALVGRLRAA+EE+GG+ ++NPFA RAVRLYL EV
Sbjct: 125 ACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAVRLYLREV 184

Query: 145 RELQAKARGISYEKKKRKR-----------QLGPLPPPPPPPHA 178
           RE QA+ARG+SYEKKKRK+              P PPPPPPP A
Sbjct: 185 REHQARARGVSYEKKKRKKPQPADTSGGGGHPHPPPPPPPPPSA 228

[Close]

BLAST of Lcy10g014020 vs. ExPASy Swiss-Prot
Match: Q0DZF3 (Protein G1-like3 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L3 PE=1 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 6.2e-63
Identity = 115/164 (70.12%), Postives = 132/164 (80.49%), Query Frame = 0


Query: 25  SSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKTKIHSH 84
           +++  T SRYE QKRRDWNTFG Y+ NHRPPL LA+CSGAHV+EFLRYLDQFGKTK+H+ 
Sbjct: 65  AATPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRYLDQFGKTKVHTA 124

Query: 85  LCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAVRLYLCEV 144
            CPFFGHP+P  PC CPLRQAWGSLDALVGRLRAA+EE+GG+ ++NPFA RAVRLYL EV
Sbjct: 125 ACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAVRLYLREV 184

Query: 145 RELQAKARGISYEKKKRKR-----------QLGPLPPPPPPPHA 178
           RE QA+ARG+SYEKKKRK+              P PPPPPPP A
Sbjct: 185 REHQARARGVSYEKKKRKKPQPADTSGGGGHPHPPPPPPPPPSA 228

[Close]

BLAST of Lcy10g014020 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 6.2e-63
Identity = 116/175 (66.29%), Postives = 139/175 (79.43%), Query Frame = 0


Query: 23  APSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKTKIH 82
           +PSSS+ +LSRYE+QKRRDWNTFG Y+ NHRPPL L+RCSGAHV+EFL+Y+DQFGKTK+H
Sbjct: 70  SPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVH 129

Query: 83  SHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAVRLYLC 142
           + +CPF+GHP+P  PC CPLRQAWGSLDAL+GRLRAAYEE+GG  + NPF ARAVRLYL 
Sbjct: 130 TPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLR 189

Query: 143 EVRELQAKARGISYEKKKRKRQ------LGPLPPPPPPPHAQMCGPTTGTGSSAS 192
           EVRE QA+ARGISYEKKKRK+        GP     PPP     G  +G G +++
Sbjct: 190 EVRETQARARGISYEKKKRKKPSSAGAGAGPSSEGSPPPPG---GSASGGGDTSA 241

[Close]

BLAST of Lcy10g014020 vs. ExPASy TrEMBL
Match: A0A1S3AX69 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo OX=3656 GN=LOC103483585 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.2e-74
Identity = 143/187 (76.47%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 12  DTDQQNVAVRSAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLR 71
           D+ Q +  +   PSSS++TLSRYENQKRRDW +FGHYI+NH PPL LARC+GAHVVEFLR
Sbjct: 2   DSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLR 61

Query: 72  YLDQFGKTKIHSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNP 131
           YLDQFGKTKIHS+LCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGG A+TNP
Sbjct: 62  YLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNP 121

Query: 132 FAARAVRLYLCEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQMCGPTTGTGSSAS 191
           F AR VR+YL EVR+LQAKARGISY+KKKRKR LG LPPPPP   A  C        S S
Sbjct: 122 FGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG-LPPPPPRSAASSC--------SES 179

Query: 192 VISQLKL 199
            ISQLKL
Sbjct: 182 TISQLKL 179

[Close]

BLAST of Lcy10g014020 vs. ExPASy TrEMBL
Match: A0A5D3D237 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001690 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.6e-74
Identity = 142/187 (75.94%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 12  DTDQQNVAVRSAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLR 71
           D+ Q +  +   PSSS++TLSRYENQKRRDW +FGHYI+NH PPL LARC+GAH+VEFLR
Sbjct: 2   DSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHIVEFLR 61

Query: 72  YLDQFGKTKIHSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNP 131
           YLDQFGKTKIHS+LCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGG A+TNP
Sbjct: 62  YLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNP 121

Query: 132 FAARAVRLYLCEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQMCGPTTGTGSSAS 191
           F AR VR+YL EVR+LQAKARGISY+KKKRKR LG LPPPPP   A  C        S S
Sbjct: 122 FGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG-LPPPPPRSAASSC--------SES 179

Query: 192 VISQLKL 199
            ISQLKL
Sbjct: 182 TISQLKL 179

[Close]

BLAST of Lcy10g014020 vs. ExPASy TrEMBL
Match: A0A0A0L4D7 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134980 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.6e-69
Identity = 136/187 (72.73%), Postives = 151/187 (80.75%), Query Frame = 0


Query: 12  DTDQQNVAVRSAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLR 71
           D+ Q +  +   PSSS++TLSRYENQKRRDW +FGHYI+N  PPL LARC+GAHVV+FLR
Sbjct: 2   DSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLR 61

Query: 72  YLDQFGKTKIHSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNP 131
           YLDQFGKTKIHS+LCPFFGHPSPSG CTCPLRQAWGSLDALVGRLRAAYEEHGG A+TNP
Sbjct: 62  YLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNP 121

Query: 132 FAARAVRLYLCEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQMCGPTTGTGSSAS 191
           F AR VR+YL EVR+LQAKARGISY+KKKRKR   PL PPP    A  C  TT       
Sbjct: 122 FGARPVRVYLREVRDLQAKARGISYQKKKRKR---PLGPPPSRSGASSCSETT------- 177

Query: 192 VISQLKL 199
            +SQLKL
Sbjct: 182 -MSQLKL 177

[Close]

BLAST of Lcy10g014020 vs. ExPASy TrEMBL
Match: A0A1S3V4Y8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771862 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.5e-67
Identity = 125/158 (79.11%), Postives = 140/158 (88.61%), Query Frame = 0


Query: 22  SAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKTKI 81
           S PSSS +TLSRYENQKRRDWNTFG Y+ NHRPPL L+RCSGAHV+EFLRYLDQFGKTK+
Sbjct: 39  SPPSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 98

Query: 82  HSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAVRLYL 141
           H+HLCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GGK +TNPF ARAVRLYL
Sbjct: 99  HTHLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYL 158

Query: 142 CEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQM 180
            EVR+ QAKARGISYEKKKRKR   P PP PPP +A++
Sbjct: 159 REVRDSQAKARGISYEKKKRKRPQHP-PPLPPPNNAKI 195

[Close]

BLAST of Lcy10g014020 vs. ExPASy TrEMBL
Match: A0A3Q0FBK8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X3 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771862 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.5e-67
Identity = 123/152 (80.92%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 22  SAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKTKI 81
           S PSSS +TLSRYENQKRRDWNTFG Y+ NHRPPL L+RCSGAHV+EFLRYLDQFGKTK+
Sbjct: 39  SPPSSSPTTLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 98

Query: 82  HSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAVRLYL 141
           H+HLCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GGK +TNPF ARAVRLYL
Sbjct: 99  HTHLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYL 158

Query: 142 CEVRELQAKARGISYEKKKRKRQLGPLPPPPP 174
            EVR+ QAKARGISYEKKKRKR   P P PPP
Sbjct: 159 REVRDSQAKARGISYEKKKRKRPQHPPPLPPP 190

[Close]

BLAST of Lcy10g014020 vs. NCBI nr
Match: XP_008438509.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo])

HSP 1 Score: 289.3 bits (739), Expect = 2.6e-74
Identity = 143/187 (76.47%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 12  DTDQQNVAVRSAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLR 71
           D+ Q +  +   PSSS++TLSRYENQKRRDW +FGHYI+NH PPL LARC+GAHVVEFLR
Sbjct: 2   DSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHVVEFLR 61

Query: 72  YLDQFGKTKIHSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNP 131
           YLDQFGKTKIHS+LCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGG A+TNP
Sbjct: 62  YLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNP 121

Query: 132 FAARAVRLYLCEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQMCGPTTGTGSSAS 191
           F AR VR+YL EVR+LQAKARGISY+KKKRKR LG LPPPPP   A  C        S S
Sbjct: 122 FGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG-LPPPPPRSAASSC--------SES 179

Query: 192 VISQLKL 199
            ISQLKL
Sbjct: 182 TISQLKL 179

[Close]

BLAST of Lcy10g014020 vs. NCBI nr
Match: KAA0049244.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo var. makuwa] >TYK17314.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo var. makuwa])

HSP 1 Score: 288.9 bits (738), Expect = 3.4e-74
Identity = 142/187 (75.94%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 12  DTDQQNVAVRSAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLR 71
           D+ Q +  +   PSSS++TLSRYENQKRRDW +FGHYI+NH PPL LARC+GAH+VEFLR
Sbjct: 2   DSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNHTPPLALARCTGAHIVEFLR 61

Query: 72  YLDQFGKTKIHSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNP 131
           YLDQFGKTKIHS+LCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGG A+TNP
Sbjct: 62  YLDQFGKTKIHSNLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNP 121

Query: 132 FAARAVRLYLCEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQMCGPTTGTGSSAS 191
           F AR VR+YL EVR+LQAKARGISY+KKKRKR LG LPPPPP   A  C        S S
Sbjct: 122 FGARPVRVYLREVRDLQAKARGISYQKKKRKRPLG-LPPPPPRSAASSC--------SES 179

Query: 192 VISQLKL 199
            ISQLKL
Sbjct: 182 TISQLKL 179

[Close]

BLAST of Lcy10g014020 vs. NCBI nr
Match: XP_038874756.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida])

HSP 1 Score: 284.3 bits (726), Expect = 8.3e-73
Identity = 143/185 (77.30%), Postives = 156/185 (84.32%), Query Frame = 0


Query: 14  DQQNVAVRSAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYL 73
           D QN  V +APS S++TLSRYENQKRRDWNTFGHYI+NH PPL LA C+GAHVVEFLRYL
Sbjct: 2   DSQNDTVEAAPSPSSTTLSRYENQKRRDWNTFGHYITNHTPPLALACCNGAHVVEFLRYL 61

Query: 74  DQFGKTKIHSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFA 133
           DQFGKTKIHS+LCPFFGHPSPSGPC+CPLRQAWGSLDALVGRLRAAYEEHGG A+ NPF 
Sbjct: 62  DQFGKTKIHSNLCPFFGHPSPSGPCSCPLRQAWGSLDALVGRLRAAYEEHGGNAEFNPFG 121

Query: 134 ARAVRLYLCEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQMCGPTTGTGSSASVI 193
           AR VRLYL EVR+LQAKARGISY+KKK KR+L  L PPPP  HA + G  +  G   S I
Sbjct: 122 ARPVRLYLREVRDLQAKARGISYQKKK-KRKLS-LSPPPPRQHAAVFGAASSNGE--STI 181

Query: 194 SQLKL 199
           SQLKL
Sbjct: 182 SQLKL 182

[Close]

BLAST of Lcy10g014020 vs. NCBI nr
Match: XP_004134409.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN56850.1 hypothetical protein Csa_010244 [Cucumis sativus])

HSP 1 Score: 272.3 bits (695), Expect = 3.2e-69
Identity = 136/187 (72.73%), Postives = 151/187 (80.75%), Query Frame = 0


Query: 12  DTDQQNVAVRSAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLR 71
           D+ Q +  +   PSSS++TLSRYENQKRRDW +FGHYI+N  PPL LARC+GAHVV+FLR
Sbjct: 2   DSLQNDTVIEPTPSSSSTTLSRYENQKRRDWTSFGHYITNRTPPLALARCTGAHVVDFLR 61

Query: 72  YLDQFGKTKIHSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNP 131
           YLDQFGKTKIHS+LCPFFGHPSPSG CTCPLRQAWGSLDALVGRLRAAYEEHGG A+TNP
Sbjct: 62  YLDQFGKTKIHSNLCPFFGHPSPSGACTCPLRQAWGSLDALVGRLRAAYEEHGGNAETNP 121

Query: 132 FAARAVRLYLCEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQMCGPTTGTGSSAS 191
           F AR VR+YL EVR+LQAKARGISY+KKKRKR   PL PPP    A  C  TT       
Sbjct: 122 FGARPVRVYLREVRDLQAKARGISYQKKKRKR---PLGPPPSRSGASSCSETT------- 177

Query: 192 VISQLKL 199
            +SQLKL
Sbjct: 182 -MSQLKL 177

[Close]

BLAST of Lcy10g014020 vs. NCBI nr
Match: TKY52746.1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 protein [Spatholobus suberectus])

HSP 1 Score: 268.1 bits (684), Expect = 6.1e-68
Identity = 124/166 (74.70%), Postives = 142/166 (85.54%), Query Frame = 0


Query: 18  VAVRSAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFG 77
           V   ++PS+S++T SRYENQKRRDWNTFG Y+ NHRPPL L+RCSGAHV+EFLRYLDQFG
Sbjct: 30  VGSSNSPSASSTTSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFG 89

Query: 78  KTKIHSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAV 137
           KTK+H+ +CPF+GHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GGK +TNPF ARAV
Sbjct: 90  KTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAV 149

Query: 138 RLYLCEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQMCGPT 184
           RLYL EVRELQ+KARGISYEKKKRKR   P PPPPPPP  Q    T
Sbjct: 150 RLYLREVRELQSKARGISYEKKKRKRPPPPPPPPPPPPPQQQLQQT 195

[Close]

BLAST of Lcy10g014020 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 257.7 bits (657), Expect = 7.7e-69
Identity = 119/152 (78.29%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 22  SAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKTKI 81
           S+  S T+ LSRYENQKRRDWNTFG Y+ NHRPPL L+RCSGAHV+EFLRYLDQFGKTK+
Sbjct: 37  SSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 96

Query: 82  HSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAVRLYL 141
           H+HLCPFFGHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GG  +TNPF ARAVRLYL
Sbjct: 97  HTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYL 156

Query: 142 CEVRELQAKARGISYEKKKRKRQLGPLPPPPP 174
            EVR+ QAKARGISYEKKKRKR   PLPP  P
Sbjct: 157 REVRDSQAKARGISYEKKKRKRPPPPLPPAQP 188

[Close]

BLAST of Lcy10g014020 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 245.0 bits (624), Expect = 5.2e-65
Identity = 115/173 (66.47%), Postives = 139/173 (80.35%), Query Frame = 0


Query: 22  SAPSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKTKI 81
           S+ SS ++  SRYENQKRRDWNTFG Y+ NHRPPL L+RCSGAHV+EFLRYLDQFGKTK+
Sbjct: 43  SSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 102

Query: 82  HSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAVRLYL 141
           H+++C F+GHP+P  PC CPLRQAWGSLDAL+GRLRAA+EE+GGK +TNPF ARAVRLYL
Sbjct: 103 HTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYL 162

Query: 142 CEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQMCGPTTGTGSSASVIS 195
            EVR++Q+KARG+SYEKKKRKR L                P++ T SS++V S
Sbjct: 163 REVRDMQSKARGVSYEKKKRKRPL----------------PSSSTSSSSAVAS 199

[Close]

BLAST of Lcy10g014020 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 231.5 bits (589), Expect = 5.9e-61
Identity = 105/139 (75.54%), Postives = 121/139 (87.05%), Query Frame = 0


Query: 25  SSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKTKIHSH 84
           SS  +T SRYE+QKRRDWNTF  Y+ NH+PPL L+RCSGAHV+EFL+YLDQFGKTK+H  
Sbjct: 23  SSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVA 82

Query: 85  LCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAVRLYLCEV 144
            CP+FGH  P  PC+CPL+QAWGSLDAL+GRLRAAYEE+GG+ D+NPFAARAVR+YL EV
Sbjct: 83  ACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREV 142

Query: 145 RELQAKARGISYEKKKRKR 164
           RE QAKARGI YEKKKRKR
Sbjct: 143 RESQAKARGIPYEKKKRKR 161

[Close]

BLAST of Lcy10g014020 vs. TAIR 10
Match: AT5G58500.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-58
Identity = 108/169 (63.91%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 23  APSSSTSTLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKTKIH 82
           A +SS+S+ SRYE+QKRRDWNTF  Y+ NH+PPL L+RCSGAHV+EFL+YLDQFGKTK+H
Sbjct: 9   AAASSSSSPSRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVH 68

Query: 83  SHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEE-HGGKADTNPFAARAVRLYL 142
           +  CPFFG P+P   CTCPL+QAWGSLDAL+GRLRAA+EE  GG  ++NPFAA+AVR+YL
Sbjct: 69  ATACPFFGQPNPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYL 128

Query: 143 CEVRELQAKARGISYEKKKRKRQLGPLPPPPPPPHAQMCGPTTGTGSSA 191
            EVR+ QAKARGI Y+KKKRKR           PH     P  G G  A
Sbjct: 129 KEVRQTQAKARGIPYDKKKRKR-----------PHTDTATPIAGDGDDA 166

[Close]

BLAST of Lcy10g014020 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 216.5 bits (550), Expect = 2.0e-56
Identity = 110/173 (63.58%), Postives = 125/173 (72.25%), Query Frame = 0


Query: 24  PSSSTS----TLSRYENQKRRDWNTFGHYISNHRPPLPLARCSGAHVVEFLRYLDQFGKT 83
           P+SST     + SRYENQKRRDWNTF  Y+ NHRPPL L  CSGAHV+EFLRYLDQFGKT
Sbjct: 12  PNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKT 71

Query: 84  KIHSHLCPFFGHPSPSGPCTCPLRQAWGSLDALVGRLRAAYEEHGGKADTNPFAARAVRL 143
           K+H   C FFG P+P  PC CPLRQAWGSLDAL+GRLRAAYEE+GG  + NPF +RAVRL
Sbjct: 72  KVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRL 131

Query: 144 YLCEVRELQAKARGISYEKK-KRKRQLGPLPPPPPPPHAQMCGPTTGTGSSAS 192
           +L EVR+ QAKARG+SYEKK KR  +  P   PP     Q   P  G    A+
Sbjct: 132 FLREVRDFQAKARGVSYEKKRKRVNRQKPQTQPPLQLQQQQQQPQQGQSMMAN 184

The following BLAST results are available for this feature:

BLAST of Lcy10g014020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW68	1.1e-67	78.29	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
O82268	7.3e-64	66.47	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
B8AH02	6.2e-63	70.12	Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1	[more]
Q0DZF3	6.2e-63	70.12	Protein G1-like3 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L3 PE=1 SV=1	[more]
A2XAV5	6.2e-63	66.29	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]

BLAST of Lcy10g014020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AX69	1.2e-74	76.47	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo OX=3656 GN=LOC1034835...	[more]
A0A5D3D237	1.6e-74	75.94	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0L4D7	1.6e-69	72.73	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134980 PE=3 S...	[more]
A0A1S3V4Y8	2.5e-67	79.11	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X1 OS=Vigna radiata var. radi...	[more]
A0A3Q0FBK8	2.5e-67	80.92	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 isoform X3 OS=Vigna radiata var. radi...	[more]

BLAST of Lcy10g014020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438509.1	2.6e-74	76.47	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo]	[more]
KAA0049244.1	3.4e-74	75.94	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis melo var. makuwa] >TYK17314....	[more]
XP_038874756.1	8.3e-73	77.30	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]	[more]
XP_004134409.1	3.2e-69	72.73	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN56850.1 hypothe...	[more]
TKY52746.1	6.1e-68	74.70	LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 protein [Spatholobus suberectus]	[more]

BLAST of Lcy10g014020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23290.2	7.7e-69	78.29	Protein of unknown function (DUF640)	[more]
AT2G31160.1	5.2e-65	66.47	Protein of unknown function (DUF640)	[more]
AT1G07090.1	5.9e-61	75.54	Protein of unknown function (DUF640)	[more]
AT5G58500.1	1.6e-58	63.91	Protein of unknown function (DUF640)	[more]
AT5G28490.1	2.0e-56	63.58	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 26..146 e-value: 1.9E-62 score: 209.0
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 33..160 score: 76.408577
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR31165:SF65	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-LIKE	coord: 15..163
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 15..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy10g014020.1	Lcy10g014020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus