Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTGCAACTCAGCCTTCTCATTCACTCTCATCAGAAAAGCACTTCCGATTTACTGTTCTTCCTCTTCCCCTTCCAATCTGGTGACCCCTTTGTTCCTTTCCCATGGCGAATTTCTCCCGTTCAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGCCGGAGACTCGCCGGAGTTTCCCCAAAAGAGCCTCATTCCAGAGCCTTCTGTTCCCCTCGAAGTTCCACAAATTTCGACTCGTCCGGAGATTGACCCGAGCACTCCGCCGGAGCTCCCACCGATAACTCCGGGTCAGAATCCAGGGCCGGATTTTCCTGGAACGCCGGCTCCGTCGCCTCCCGGACCCGAGTTTCCGATTCCACCGGCTCCGTCGCCTCCGGGCATTGACGTGCCGGTACCGCCCCATAAGCCTCCAGATATAGAGCGGCCGAGGCCTGGGTCGCCGGTGCCAGGACCGGACATTTTGCCGCCGCCGCCACCGGAAGAGGTGCCGCCGAGGCCCGCCGGTCCGGAGATCGTGACGTAGTTGTCTACATACCAGTATGTAGGGATCTTTCTACATATCCCATTAAAATCTTGACAGGTAAGAAAGAGGAAAGGAGAAAATGAGAATTTTTTGTTACCTCTCTTAATTGTCAACGTTTTAATGGTGGTATGCAGGGAGATCCCTACATTGCAGACAAGTTTTTTCCATATTTTCAAATTTCAGAGTAGGATAGAGTAG
mRNA sequence
ATGTCCTGCAACTCAGCCTTCTCATTCACTCTCATCAGAAAAGCACTTCCGATTTACTGTTCTTCCTCTTCCCCTTCCAATCTGGTGACCCCTTTGTTCCTTTCCCATGGCGAATTTCTCCCGTTCAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGCCGGAGACTCGCCGGAGTTTCCCCAAAAGAGCCTCATTCCAGAGCCTTCTGTTCCCCTCGAAGTTCCACAAATTTCGACTCGTCCGGAGATTGACCCGAGCACTCCGCCGGAGCTCCCACCGATAACTCCGGGTCAGAATCCAGGGCCGGATTTTCCTGGAACGCCGGCTCCGTCGCCTCCCGGACCCGAGTTTCCGATTCCACCGGCTCCGTCGCCTCCGGGCATTGACGTGCCGGTACCGCCCCATAAGCCTCCAGATATAGAGCGGCCGAGGCCTGGGTCGCCGGTGCCAGGACCGGACATTTTGCCGCCGCCGCCACCGGAAGAGAGTAGGATAGAGTAG
Coding sequence (CDS)
ATGTCCTGCAACTCAGCCTTCTCATTCACTCTCATCAGAAAAGCACTTCCGATTTACTGTTCTTCCTCTTCCCCTTCCAATCTGGTGACCCCTTTGTTCCTTTCCCATGGCGAATTTCTCCCGTTCAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGCCGGAGACTCGCCGGAGTTTCCCCAAAAGAGCCTCATTCCAGAGCCTTCTGTTCCCCTCGAAGTTCCACAAATTTCGACTCGTCCGGAGATTGACCCGAGCACTCCGCCGGAGCTCCCACCGATAACTCCGGGTCAGAATCCAGGGCCGGATTTTCCTGGAACGCCGGCTCCGTCGCCTCCCGGACCCGAGTTTCCGATTCCACCGGCTCCGTCGCCTCCGGGCATTGACGTGCCGGTACCGCCCCATAAGCCTCCAGATATAGAGCGGCCGAGGCCTGGGTCGCCGGTGCCAGGACCGGACATTTTGCCGCCGCCGCCACCGGAAGAGAGTAGGATAGAGTAG
Protein sequence
MSCNSAFSFTLIRKALPIYCSSSSPSNLVTPLFLSHGEFLPFKNSAPLSRFLLAGDSPEFPQKSLIPEPSVPLEVPQISTRPEIDPSTPPELPPITPGQNPGPDFPGTPAPSPPGPEFPIPPAPSPPGIDVPVPPHKPPDIERPRPGSPVPGPDILPPPPPEESRIE
Homology
BLAST of Lcy10g013240 vs. ExPASy TrEMBL
Match:
A0A6J1IL49 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111475363 PE=4 SV=1)
HSP 1 Score: 252.3 bits (643), Expect = 1.4e-63
Identity = 137/162 (84.57%), Postives = 142/162 (87.65%), Query Frame = 0
Query: 1 MSCNSAFSFTLIRKALPIYCSSSSPSNLVTPLFLSHGEFLPFKNSAPLSRFLLAGDSPEF 60
MSC S FSFTLIRK LPIY SSSS SNLV P FLSHGEFLPFKNSAPLSRFLL GDSPEF
Sbjct: 1 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFLSHGEFLPFKNSAPLSRFLLVGDSPEF 60
Query: 61 PQKSLIPEPSVPLEVPQISTRPEIDPSTPPELPPITPGQNPGPDFPGTPAPSPPGPEFPI 120
PQKS IPEPSVPLE+PQIST PEIDP TPPELPPIT PGPDFPG P+P PPGP+FP+
Sbjct: 61 PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPIT----PGPDFPGLPSPLPPGPDFPV 120
Query: 121 PPAPSPPGIDVPVPPHKPPDIERPRPGSPVPGPDILPPPPPE 163
PP PSPPGIDVP+PPHKPPDIE PRPGSPVP PDILPPPPPE
Sbjct: 121 PPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPE 158
BLAST of Lcy10g013240 vs. ExPASy TrEMBL
Match:
A0A6J1GD64 (vegetative cell wall protein gp1 OS=Cucurbita moschata OX=3662 GN=LOC111452871 PE=4 SV=1)
HSP 1 Score: 246.5 bits (628), Expect = 7.8e-62
Identity = 134/162 (82.72%), Postives = 140/162 (86.42%), Query Frame = 0
Query: 1 MSCNSAFSFTLIRKALPIYCSSSSPSNLVTPLFLSHGEFLPFKNSAPLSRFLLAGDSPEF 60
MSC S FSFTLIRK LPIY SSSS SNLV P F SHGEFLPFKNSAPLSRFLL GDSPEF
Sbjct: 1 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEF 60
Query: 61 PQKSLIPEPSVPLEVPQISTRPEIDPSTPPELPPITPGQNPGPDFPGTPAPSPPGPEFPI 120
PQKS IPEPSVPLE+PQIST PEIDP TPPELPP+T PGPDFPG P+P PPGP+ P+
Sbjct: 61 PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLT----PGPDFPGLPSPLPPGPDLPV 120
Query: 121 PPAPSPPGIDVPVPPHKPPDIERPRPGSPVPGPDILPPPPPE 163
PP PSPPGIDVP+PPHKPPDIE PRPGSPVP PDILPPPPPE
Sbjct: 121 PPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPE 158
BLAST of Lcy10g013240 vs. ExPASy TrEMBL
Match:
A0A5D3D162 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00890 PE=4 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 2.0e-41
Identity = 110/164 (67.07%), Postives = 120/164 (73.17%), Query Frame = 0
Query: 1 MSCNSAFSFTLIRKALPIYCSSSSPSNLVTPLFLSHGEFLPFKN-SAPLSRFLLAGDSPE 60
MSC S FSFTLI K LP Y SS SN VTPL SH +FL F S LSR +L+GDSPE
Sbjct: 5 MSCTSLFSFTLITKTLPSYYPSS--SNFVTPLLFSHSQFLSFNEYSTSLSRSMLSGDSPE 64
Query: 61 FPQKSLIPEPSVPLEVPQISTRPEIDPSTPPELPPITPGQNPGPDFPGTPAPSPPGPEFP 120
FP+ +P PS+PLE+PQ S PEIDPSTP ELP IT P PDFP P PPGPEFP
Sbjct: 65 FPKSRPVPPPSLPLEIPQFSPPPEIDPSTPSELPSIT----PEPDFPD---PRPPGPEFP 124
Query: 121 IPPAPSPPGIDVPVPPHKPPDIERPRPGSPVPGPDILPPPPPEE 164
PP+PSPPGIDVPVPP +PPDIE P PGSPVPGP+ILPP PPEE
Sbjct: 125 KPPSPSPPGIDVPVPPRRPPDIEPPWPGSPVPGPEILPPSPPEE 159
BLAST of Lcy10g013240 vs. ExPASy TrEMBL
Match:
A0A0A0L4M0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144200 PE=4 SV=1)
HSP 1 Score: 159.8 bits (403), Expect = 9.6e-36
Identity = 103/164 (62.80%), Postives = 114/164 (69.51%), Query Frame = 0
Query: 1 MSCNSAFSFTLIRKALPIYCSSSSPSNLVTPLFLSHGEFLPFKN-SAPLSRFLLAGDSPE 60
MS S FSFTLIRK LP Y SS + + P SH +FLPF A LS LL+GDSPE
Sbjct: 5 MSYTSLFSFTLIRKTLPSYYPCSS-NFAINPFLFSHSQFLPFNEYPASLSLSLLSGDSPE 64
Query: 61 FPQKSLIPEPSVPLEVPQISTRPEIDPSTPPELPPITPGQNPGPDFPGTPAPSPPGPEFP 120
FP+ +P PS PLE+PQ S PEIDPSTP ELP IT P P+FP P PPGPEFP
Sbjct: 65 FPEIRPVPPPSFPLEIPQFSPPPEIDPSTPSELPSIT----PEPEFP----PRPPGPEFP 124
Query: 121 IPPAPSPPGIDVPVPPHKPPDIERPRPGSPVPGPDILPPPPPEE 164
PP PSPPGIDVP+PP KPP+IE P PGSPVP P+ILPP PPEE
Sbjct: 125 KPPLPSPPGIDVPLPPRKPPEIEPPWPGSPVPEPEILPPSPPEE 159
BLAST of Lcy10g013240 vs. ExPASy TrEMBL
Match:
A0A6P5SZB6 (vegetative cell wall protein gp1 OS=Prunus avium OX=42229 GN=LOC110760948 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 9.0e-10
Identity = 73/177 (41.24%), Postives = 92/177 (51.98%), Query Frame = 0
Query: 5 SAFSFTLIRKALPIYCSSSSPSNLVTPLFLSHGEFLPFKNSAPLSRFLLA---------- 64
S+FS TLIR+ +P S +S ++ + FLS K PL+ +LA
Sbjct: 6 SSFSSTLIRRTIPFCSSPTSTTSATSTQFLSRKR----KPIRPLASHILARALPYPPDQY 65
Query: 65 --GDSPEF--PQKSLIPEPSVPLEVPQISTRPEIDPS--TPPEL----PPITPGQNPGPD 124
PEF P +PS P EVP IST P++DP+ PPE+ PP+ PG NPGPD
Sbjct: 66 PTRSPPEFSPPVPGRYDQPSAPPEVPGISTSPDVDPTPVPPPEVNPYPPPLDPGPNPGPD 125
Query: 125 FPGTPAPSPPGPEFPIPPAPSPPGIDVPVPPHKPPDIERPRPGSPVPGPDILPPPPP 162
FP P PP P+ P PP P P V P +PPDI P P PGP+I+PPP P
Sbjct: 126 FPVPPLKPPPVPDIP-PPFPDNPLPKPDVVPPQPPDIVPP----PPPGPEIIPPPAP 173
BLAST of Lcy10g013240 vs. NCBI nr
Match:
XP_022975412.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita maxima] >XP_022975628.1 leucine-rich repeat extensin-like protein 3 isoform X1 [Cucurbita maxima] >XP_022975629.1 leucine-rich repeat extensin-like protein 3 isoform X2 [Cucurbita maxima] >XP_022975630.1 leucine-rich repeat extensin-like protein 3 isoform X3 [Cucurbita maxima])
HSP 1 Score: 252.3 bits (643), Expect = 2.9e-63
Identity = 137/162 (84.57%), Postives = 142/162 (87.65%), Query Frame = 0
Query: 1 MSCNSAFSFTLIRKALPIYCSSSSPSNLVTPLFLSHGEFLPFKNSAPLSRFLLAGDSPEF 60
MSC S FSFTLIRK LPIY SSSS SNLV P FLSHGEFLPFKNSAPLSRFLL GDSPEF
Sbjct: 1 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFLSHGEFLPFKNSAPLSRFLLVGDSPEF 60
Query: 61 PQKSLIPEPSVPLEVPQISTRPEIDPSTPPELPPITPGQNPGPDFPGTPAPSPPGPEFPI 120
PQKS IPEPSVPLE+PQIST PEIDP TPPELPPIT PGPDFPG P+P PPGP+FP+
Sbjct: 61 PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPIT----PGPDFPGLPSPLPPGPDFPV 120
Query: 121 PPAPSPPGIDVPVPPHKPPDIERPRPGSPVPGPDILPPPPPE 163
PP PSPPGIDVP+PPHKPPDIE PRPGSPVP PDILPPPPPE
Sbjct: 121 PPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPE 158
BLAST of Lcy10g013240 vs. NCBI nr
Match:
KAG6597407.1 (hypothetical protein SDJN03_10587, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 249.2 bits (635), Expect = 2.5e-62
Identity = 135/162 (83.33%), Postives = 141/162 (87.04%), Query Frame = 0
Query: 1 MSCNSAFSFTLIRKALPIYCSSSSPSNLVTPLFLSHGEFLPFKNSAPLSRFLLAGDSPEF 60
MSC S FSFTLIRK LPIY SSSS SNLV P FLSHGEFLPFKNSAPLSRFLL GDSPEF
Sbjct: 1 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFLSHGEFLPFKNSAPLSRFLLVGDSPEF 60
Query: 61 PQKSLIPEPSVPLEVPQISTRPEIDPSTPPELPPITPGQNPGPDFPGTPAPSPPGPEFPI 120
PQKS IPEPSVPLE+PQIST PEIDP TPPELPP+T PGPDFPG P+P PPGP+ P+
Sbjct: 61 PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLT----PGPDFPGLPSPLPPGPDLPV 120
Query: 121 PPAPSPPGIDVPVPPHKPPDIERPRPGSPVPGPDILPPPPPE 163
PP PSPPGIDVP+PPHKPPDIE PRPGSPVP PDILPPPPPE
Sbjct: 121 PPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPE 158
BLAST of Lcy10g013240 vs. NCBI nr
Match:
XP_022949559.1 (vegetative cell wall protein gp1 [Cucurbita moschata])
HSP 1 Score: 246.5 bits (628), Expect = 1.6e-61
Identity = 134/162 (82.72%), Postives = 140/162 (86.42%), Query Frame = 0
Query: 1 MSCNSAFSFTLIRKALPIYCSSSSPSNLVTPLFLSHGEFLPFKNSAPLSRFLLAGDSPEF 60
MSC S FSFTLIRK LPIY SSSS SNLV P F SHGEFLPFKNSAPLSRFLL GDSPEF
Sbjct: 1 MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEF 60
Query: 61 PQKSLIPEPSVPLEVPQISTRPEIDPSTPPELPPITPGQNPGPDFPGTPAPSPPGPEFPI 120
PQKS IPEPSVPLE+PQIST PEIDP TPPELPP+T PGPDFPG P+P PPGP+ P+
Sbjct: 61 PQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLT----PGPDFPGLPSPLPPGPDLPV 120
Query: 121 PPAPSPPGIDVPVPPHKPPDIERPRPGSPVPGPDILPPPPPE 163
PP PSPPGIDVP+PPHKPPDIE PRPGSPVP PDILPPPPPE
Sbjct: 121 PPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPE 158
BLAST of Lcy10g013240 vs. NCBI nr
Match:
XP_023539404.1 (pistil-specific extensin-like protein [Cucurbita pepo subsp. pepo])
HSP 1 Score: 235.3 bits (599), Expect = 3.7e-58
Identity = 131/162 (80.86%), Postives = 137/162 (84.57%), Query Frame = 0
Query: 1 MSCNSAFSFTLIRKALPIYCSSSSPSNLVTPLFLSHGEFLPFKNSAPLSRFLLAGDSPEF 60
MSC S FSFTL+RK LPIY SSSSPS+ FLSHGEFLPFKNSAPLSRFLL GDSPEF
Sbjct: 1 MSCTSPFSFTLMRKTLPIYYSSSSPSS-----FLSHGEFLPFKNSAPLSRFLLVGDSPEF 60
Query: 61 PQKSLIPEPSVPLEVPQISTRPEIDPSTPPELPPITPGQNPGPDFPGTPAPSPPGPEFPI 120
PQKS IPEPSVPLEVPQIS P IDP TPPELPPIT PGPDFPG P+P PPGP+ P+
Sbjct: 61 PQKSPIPEPSVPLEVPQISISPAIDPITPPELPPIT----PGPDFPGLPSPLPPGPDLPV 120
Query: 121 PPAPSPPGIDVPVPPHKPPDIERPRPGSPVPGPDILPPPPPE 163
PP PSPPGIDVP+PPHKPPDIE PRPGSPVP PDILPPPPPE
Sbjct: 121 PPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPE 153
BLAST of Lcy10g013240 vs. NCBI nr
Match:
TYK17238.1 (hypothetical protein E5676_scaffold434G00890 [Cucumis melo var. makuwa])
HSP 1 Score: 178.7 bits (452), Expect = 4.1e-41
Identity = 110/164 (67.07%), Postives = 120/164 (73.17%), Query Frame = 0
Query: 1 MSCNSAFSFTLIRKALPIYCSSSSPSNLVTPLFLSHGEFLPFKN-SAPLSRFLLAGDSPE 60
MSC S FSFTLI K LP Y SS SN VTPL SH +FL F S LSR +L+GDSPE
Sbjct: 5 MSCTSLFSFTLITKTLPSYYPSS--SNFVTPLLFSHSQFLSFNEYSTSLSRSMLSGDSPE 64
Query: 61 FPQKSLIPEPSVPLEVPQISTRPEIDPSTPPELPPITPGQNPGPDFPGTPAPSPPGPEFP 120
FP+ +P PS+PLE+PQ S PEIDPSTP ELP IT P PDFP P PPGPEFP
Sbjct: 65 FPKSRPVPPPSLPLEIPQFSPPPEIDPSTPSELPSIT----PEPDFPD---PRPPGPEFP 124
Query: 121 IPPAPSPPGIDVPVPPHKPPDIERPRPGSPVPGPDILPPPPPEE 164
PP+PSPPGIDVPVPP +PPDIE P PGSPVPGP+ILPP PPEE
Sbjct: 125 KPPSPSPPGIDVPVPPRRPPDIEPPWPGSPVPGPEILPPSPPEE 159
BLAST of Lcy10g013240 vs. TAIR 10
Match:
AT5G43770.1 (proline-rich family protein )
HSP 1 Score: 55.8 bits (133), Expect = 3.8e-08
Identity = 68/169 (40.24%), Postives = 86/169 (50.89%), Query Frame = 0
Query: 7 FSFTLIRKALPIYCSSSSPSNLVTPLFLSHGEFLPFKNSAPLSRFLLAGDSPEFPQKSLI 66
+S LI + C+S L S G + + P +F G SP +K L
Sbjct: 24 WSGRLITAVKSVSCTSKPVRGLTN---YSTGVYFVSQTGPPEIKF--PGGSPS--EKELP 83
Query: 67 PEPS-----VPLEVPQISTRPEIDPS-TPPEL-------PPITPGQNPGPDFPGTPAPSP 126
PS PLEVP++ PEI PS TPPE+ PP+ P Q PGP+FP P+PSP
Sbjct: 84 SGPSRGPELAPLEVPELPNIPEISPSETPPEVTTVPSDPPPLGPPQTPGPEFPVPPSPSP 143
Query: 127 PGPEFPIPPAP-SPPGIDVPV-PPHKPPDIERPRPGSPVPGPDILPPPP 161
P P+ P PP P +PP + P+ P +PPDI P SP PG D PPPP
Sbjct: 144 PMPDTPNPPTPKTPPDVVPPIWEPPRPPDIFPPE--SPPPGID--PPPP 181
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1IL49 | 1.4e-63 | 84.57 | leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC11... | [more] |
A0A6J1GD64 | 7.8e-62 | 82.72 | vegetative cell wall protein gp1 OS=Cucurbita moschata OX=3662 GN=LOC111452871 P... | [more] |
A0A5D3D162 | 2.0e-41 | 67.07 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0L4M0 | 9.6e-36 | 62.80 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144200 PE=4 SV=1 | [more] |
A0A6P5SZB6 | 9.0e-10 | 41.24 | vegetative cell wall protein gp1 OS=Prunus avium OX=42229 GN=LOC110760948 PE=4 S... | [more] |
Match Name | E-value | Identity | Description | |
XP_022975412.1 | 2.9e-63 | 84.57 | leucine-rich repeat extensin-like protein 3 [Cucurbita maxima] >XP_022975628.1 l... | [more] |
KAG6597407.1 | 2.5e-62 | 83.33 | hypothetical protein SDJN03_10587, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022949559.1 | 1.6e-61 | 82.72 | vegetative cell wall protein gp1 [Cucurbita moschata] | [more] |
XP_023539404.1 | 3.7e-58 | 80.86 | pistil-specific extensin-like protein [Cucurbita pepo subsp. pepo] | [more] |
TYK17238.1 | 4.1e-41 | 67.07 | hypothetical protein E5676_scaffold434G00890 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT5G43770.1 | 3.8e-08 | 40.24 | proline-rich family protein | [more] |